Description

Ensembl ID PGSC0003DMG400001863 Gene ID Accession -
Symbol Alias - Full Name Nonsense-mediated mRNA decay protein
Status Confidence Length 19136 bases Strand Plus strand
Position 8 : 50247069 - 50266204 RNA binding domain ResIII , UPF1_1B_dom , UPF1_Zn_bind
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
PGSC0003DMT400004711 ResIII PF04851 5.2e-05 1
PGSC0003DMT400004711 UPF1_1B_dom PF18141 2e-29 2
PGSC0003DMT400004711 UPF1_Zn_bind PF09416 4.8e-73 3
PGSC0003DMT400004710 ResIII PF04851 5.3e-05 1
PGSC0003DMT400004710 UPF1_1B_dom PF18141 2e-29 2
PGSC0003DMT400004710 UPF1_Zn_bind PF09416 5.1e-73 3
PGSC0003DMT400004712 ResIII PF04851 5.4e-05 1
PGSC0003DMT400004712 UPF1_1B_dom PF18141 2.1e-29 2
PGSC0003DMT400004712 UPF1_Zn_bind PF09416 5.3e-73 3

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- PGSC0003DMT400004710 4840 1176aa PGSC0003DMT400004710
- PGSC0003DMT400004711 4857 1152aa PGSC0003DMT400004711
- PGSC0003DMT400004712 4565 1199aa PGSC0003DMT400004712

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
PGSC0003DMG400001863

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
PGSC0003DMG400001863

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression