Description

Ensembl ID PGSC0003DMG400000632 Gene ID Accession -
Symbol Alias - Full Name Pentatricopeptide repeat-containing protein
Status Confidence Length 4132 bases Strand Minus strand
Position 3 : 56394225 - 56398356 RNA binding domain PPR_3 , PPR_long , PPR
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
PGSC0003DMT400001689 PPR_3 PF13812 7.1e-65 1
PGSC0003DMT400001689 PPR_3 PF13812 7.1e-65 2
PGSC0003DMT400001689 PPR_3 PF13812 7.1e-65 3
PGSC0003DMT400001689 PPR_3 PF13812 7.1e-65 4
PGSC0003DMT400001689 PPR_3 PF13812 7.1e-65 5
PGSC0003DMT400001689 PPR_3 PF13812 7.1e-65 6
PGSC0003DMT400001689 PPR_3 PF13812 7.1e-65 7
PGSC0003DMT400001689 PPR_3 PF13812 7.1e-65 8
PGSC0003DMT400001689 PPR_long PF17177 9e-36 9
PGSC0003DMT400001689 PPR_long PF17177 9e-36 10
PGSC0003DMT400001689 PPR_long PF17177 9e-36 11
PGSC0003DMT400001689 PPR PF01535 2.2e-104 12
PGSC0003DMT400001689 PPR PF01535 2.2e-104 13
PGSC0003DMT400001689 PPR PF01535 2.2e-104 14
PGSC0003DMT400001689 PPR PF01535 2.2e-104 15
PGSC0003DMT400001689 PPR PF01535 2.2e-104 16
PGSC0003DMT400001689 PPR PF01535 2.2e-104 17
PGSC0003DMT400001689 PPR PF01535 2.2e-104 18
PGSC0003DMT400001689 PPR PF01535 2.2e-104 19
PGSC0003DMT400001689 PPR PF01535 2.2e-104 20
PGSC0003DMT400001689 PPR PF01535 2.2e-104 21
PGSC0003DMT400001689 PPR PF01535 2.2e-104 22
PGSC0003DMT400001689 PPR PF01535 2.2e-104 23
PGSC0003DMT400001689 PPR PF01535 2.2e-104 24
PGSC0003DMT400001689 PPR PF01535 2.2e-104 25
PGSC0003DMT400001690 PPR_3 PF13812 7.1e-65 1
PGSC0003DMT400001690 PPR_3 PF13812 7.1e-65 2
PGSC0003DMT400001690 PPR_3 PF13812 7.1e-65 3
PGSC0003DMT400001690 PPR_3 PF13812 7.1e-65 4
PGSC0003DMT400001690 PPR_3 PF13812 7.1e-65 5
PGSC0003DMT400001690 PPR_3 PF13812 7.1e-65 6
PGSC0003DMT400001690 PPR_3 PF13812 7.1e-65 7
PGSC0003DMT400001690 PPR_3 PF13812 7.1e-65 8
PGSC0003DMT400001690 PPR_long PF17177 9e-36 9
PGSC0003DMT400001690 PPR_long PF17177 9e-36 10
PGSC0003DMT400001690 PPR_long PF17177 9e-36 11
PGSC0003DMT400001690 PPR PF01535 2.2e-104 12
PGSC0003DMT400001690 PPR PF01535 2.2e-104 13
PGSC0003DMT400001690 PPR PF01535 2.2e-104 14
PGSC0003DMT400001690 PPR PF01535 2.2e-104 15
PGSC0003DMT400001690 PPR PF01535 2.2e-104 16
PGSC0003DMT400001690 PPR PF01535 2.2e-104 17
PGSC0003DMT400001690 PPR PF01535 2.2e-104 18
PGSC0003DMT400001690 PPR PF01535 2.2e-104 19
PGSC0003DMT400001690 PPR PF01535 2.2e-104 20
PGSC0003DMT400001690 PPR PF01535 2.2e-104 21
PGSC0003DMT400001690 PPR PF01535 2.2e-104 22
PGSC0003DMT400001690 PPR PF01535 2.2e-104 23
PGSC0003DMT400001690 PPR PF01535 2.2e-104 24
PGSC0003DMT400001690 PPR PF01535 2.2e-104 25
PGSC0003DMT400001691 PPR_3 PF13812 7.1e-65 1
PGSC0003DMT400001691 PPR_3 PF13812 7.1e-65 2
PGSC0003DMT400001691 PPR_3 PF13812 7.1e-65 3
PGSC0003DMT400001691 PPR_3 PF13812 7.1e-65 4
PGSC0003DMT400001691 PPR_3 PF13812 7.1e-65 5
PGSC0003DMT400001691 PPR_3 PF13812 7.1e-65 6
PGSC0003DMT400001691 PPR_3 PF13812 7.1e-65 7
PGSC0003DMT400001691 PPR_3 PF13812 7.1e-65 8
PGSC0003DMT400001691 PPR_long PF17177 9e-36 9
PGSC0003DMT400001691 PPR_long PF17177 9e-36 10
PGSC0003DMT400001691 PPR_long PF17177 9e-36 11
PGSC0003DMT400001691 PPR PF01535 2.2e-104 12
PGSC0003DMT400001691 PPR PF01535 2.2e-104 13
PGSC0003DMT400001691 PPR PF01535 2.2e-104 14
PGSC0003DMT400001691 PPR PF01535 2.2e-104 15
PGSC0003DMT400001691 PPR PF01535 2.2e-104 16
PGSC0003DMT400001691 PPR PF01535 2.2e-104 17
PGSC0003DMT400001691 PPR PF01535 2.2e-104 18
PGSC0003DMT400001691 PPR PF01535 2.2e-104 19
PGSC0003DMT400001691 PPR PF01535 2.2e-104 20
PGSC0003DMT400001691 PPR PF01535 2.2e-104 21
PGSC0003DMT400001691 PPR PF01535 2.2e-104 22
PGSC0003DMT400001691 PPR PF01535 2.2e-104 23
PGSC0003DMT400001691 PPR PF01535 2.2e-104 24
PGSC0003DMT400001691 PPR PF01535 2.2e-104 25

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- PGSC0003DMT400001689 3771 816aa PGSC0003DMT400001689
- PGSC0003DMT400001690 3658 816aa PGSC0003DMT400001690
- PGSC0003DMT400001691 4038 816aa PGSC0003DMT400001691

Gene Model

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
PGSC0003DMG400000632

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
PGSC0003DMG400000632

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression