RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	Os11g0157000	Gene ID		Accession	-
Symbol		Alias	-	Full Name	Putative 5-3 exonuclease domain containing protein
Status	Confidence	Length	11046 bases	Strand	Minus strand
Position	11 : 2713230 - 2724275	RNA binding domain	XRN_N
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
Os11t0157000-00	XRN_N	PF03159	1.5e-15	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	Os11t0157000-00	2626	141aa	Os11t0157000-00

Gene Model

Click here to download Os11g0157000's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download Os11g0157000's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
Os11g0157000

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
Os11g0157000	oryza_sativa	Os11t0157000-00	42.5532	41.1348	oryza_nivara	ONIVA07G22770.1	44.4444	42.963

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression