Description

Ensembl ID Os07g0163500 Gene ID Accession -
Symbol WP1 Alias - Full Name Val-tRNA synthetase, Regulation of chloroplast ribosome biogenesis, Early chloroplast developmen
Status Confidence Length 11953 bases Strand Plus strand
Position 7 : 3388224 - 3400176 RNA binding domain tRNA-synt_1g , Val_tRNA-synt_C , tRNA-synt_1 , Anticodon_1
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
Os07t0163500-01 Val_tRNA-synt_C PF10458 2.9e-14 1
Os07t0163500-01 tRNA-synt_1g PF09334 4.7e-25 2
Os07t0163500-01 tRNA-synt_1g PF09334 4.7e-25 3
Os07t0163500-01 tRNA-synt_1g PF09334 4.7e-25 4
Os07t0163500-01 Anticodon_1 PF08264 3.2e-40 5
Os07t0163500-01 tRNA-synt_1 PF00133 3.9e-201 6

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- Os07t0163500-01 3177 958aa Os07t0163500-01

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
Os07g0163500oryza_sativaOs02t0183900-0035.887121.371oryza_sativaOs07t0163500-019.290195.53236
Os07g0163500oryza_sativaOs06t0645400-0132.9819.1991oryza_sativaOs07t0163500-0129.227617.0146
Os07g0163500oryza_sativaOs03t0209600-0135.215919.103oryza_sativaOs07t0163500-0122.129412.0042
Os07g0163500oryza_sativaOs01t0120300-0024.93715.869oryza_sativaOs07t0163500-0120.668113.1524
Os07g0163500oryza_sativaOs05t0241100-0123.91314.5963oryza_sativaOs07t0163500-018.037584.90605
Os07g0163500oryza_sativaOs09t0503400-0126.75814.3379oryza_sativaOs07t0163500-0130.584616.3883
Os07g0163500oryza_sativaOs09t0378300-0126.965314.351oryza_sativaOs07t0163500-0130.793316.3883
Os07g0163500oryza_sativaOs02t0778200-0132.703218.9036oryza_sativaOs07t0163500-0136.116920.8768
Os07g0163500oryza_sativaOs10t0400100-0134.545520.8264oryza_sativaOs07t0163500-0121.816313.1524
Os07g0163500oryza_sativaOs01t0821800-0126.405915.1589oryza_sativaOs07t0163500-0111.27356.47182
Os07g0163500oryza_sativaOs03t0694900-0153.605336.4326oryza_sativaOs07t0163500-0158.97740.0835
Os07g0163500oryza_sativaOs03t0335600-0157.249140.8922oryza_sativaOs07t0163500-0132.150322.9645
Os07g0163500oryza_sativaOs10t0506200-0053.479535.5577oryza_sativaOs07t0163500-0158.559538.9353

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
Os07g0163500oryza_sativaOs07t0163500-0171.503156.6806chlamydomonas_reinhardtiiPNW8130570.328555.7495
Os07g0163500oryza_sativaOs07t0163500-0180.897766.2839physcomitrium_patensPp3c12_13790V3.277.889563.8191
Os07g0163500oryza_sativaOs07t0163500-0188.413478.4969papaver_somniferumRZC7783788.045778.1705
Os07g0163500oryza_sativaOs07t0163500-0185.908175.3653papaver_somniferumRZC8271066.424558.2728
Os07g0163500oryza_sativaOs07t0163500-0119.83317.6409cannabis_sativa_femalecds.novel_model_418_5bda875f74.803166.5354
Os07g0163500oryza_sativaOs07t0163500-0132.985427.5574cannabis_sativa_femalecds.evm.model.ctgX1.384.266770.4
Os07g0163500oryza_sativaOs07t0163500-0153.027146.9729ficus_caricaFCD_00010420-RA:cds88.041677.9896
Os07g0163500oryza_sativaOs07t0163500-0189.457277.3486citrullus_lanatusCla97C05G093590.188.441776.4706
Os07g0163500oryza_sativaOs07t0163500-0190.083579.8539theobroma_cacaoEOY0393888.877478.7848
Os07g0163500oryza_sativaOs07t0163500-0154.697341.9624chondrus_crispusCDF3774071.002754.4715
Os07g0163500oryza_sativaOs07t0163500-0123.38221.2944cucumis_sativusKGN5777183.271475.8364
Os07g0163500oryza_sativaOs07t0163500-0122.964518.6848cucumis_sativusKGN5777085.937569.9219
Os07g0163500oryza_sativaOs07t0163500-0190.187979.9582populus_trichocarpaPotri.017G124500.1.v4.188.888978.8066
Os07g0163500oryza_sativaOs07t0163500-0142.693137.2651populus_trichocarpaPotri.004G090732.2.v4.189.890178.4615
Os07g0163500oryza_sativaOs07t0163500-0187.578377.5574arabidopsis_thalianaAT5G16715.186.139676.2834
Os07g0163500oryza_sativaOs07t0163500-0179.227663.7787marchantia_polymorphaPTQ4047772.770958.581
Os07g0163500oryza_sativaOs07t0163500-0187.787178.0793brassica_napusCDX6942786.34576.7967
Os07g0163500oryza_sativaOs07t0163500-0187.891477.9749brassica_napusCDY1698666.825459.2857
Os07g0163500oryza_sativaOs07t0163500-0188.622178.7056prunus_dulcisVVA2983387.706677.8926
Os07g0163500oryza_sativaOs07t0163500-0121.398718.476prunus_persicaONI1748792.760280.0905
Os07g0163500oryza_sativaOs07t0163500-0115.553214.6138prunus_persicaONI1748887.647182.3529
Os07g0163500oryza_sativaOs07t0163500-0187.995876.8267cajanus_cajanC.cajan_14196.t89.490478.1316
Os07g0163500oryza_sativaOs07t0163500-0186.430176.3048malus_domestica_goldenmRNA:MD09G022680083.720973.913
Os07g0163500oryza_sativaOs07t0163500-0147.28640.1879malus_domestica_goldenmRNA:MD17G022200069.799759.322
Os07g0163500oryza_sativaOs07t0163500-0118.47616.3883malus_domestica_goldenmRNA:MD17G022220060.824753.9519
Os07g0163500oryza_sativaOs07t0163500-0131.941526.2004malus_domestica_goldenmRNA:MD05G002850078.260964.1944
Os07g0163500oryza_sativaOs07t0163500-0182.88173.0689lupinus_angustifoliusOIW0327686.96676.6703
Os07g0163500oryza_sativaOs07t0163500-0188.413477.2443medicago_truncatulaKEH2555686.428675.5102
Os07g0163500oryza_sativaOs07t0163500-0188.830978.1837pisum_sativumPsat1g089800.1.cds87.103476.6633
Os07g0163500oryza_sativaOs07t0163500-0176.722365.9708phaseolus_vulgarisESW2376889.634177.0732
Os07g0163500oryza_sativaOs07t0163500-0110.3349.39457phaseolus_vulgarisESW3096066.891960.8108
Os07g0163500oryza_sativaOs07t0163500-0138.517732.2547vigna_unguiculataVigun04g095200.2.v1.284.246670.5479
Os07g0163500oryza_sativaOs07t0163500-0139.144134.5511vigna_unguiculataVigun04g095300.1.v1.283.892674.0492
Os07g0163500oryza_sativaOs07t0163500-0136.847631.4196glycine_maxKRH0478386.732273.9558
Os07g0163500oryza_sativaOs07t0163500-0121.816319.4154glycine_maxKRH0478694.144183.7838
Os07g0163500oryza_sativaOs07t0163500-0114.40512.7349glycine_maxKRH0478771.87563.5417
Os07g0163500oryza_sativaOs07t0163500-0114.926912.7349vigna_angularisKOM5608868.7558.6538
Os07g0163500oryza_sativaOs07t0163500-0124.843419.9374vigna_angularisKOM5608786.545569.4545
Os07g0163500oryza_sativaOs07t0163500-0191.127381.4196manihot_esculentaOAY5716590.092980.4954
Os07g0163500oryza_sativaOs07t0163500-0187.787177.453capsicum_annuumPHT8641987.0676.8116
Os07g0163500oryza_sativaOs07t0163500-0179.645170.4593solanum_lycopersicumSolyc12g019110.2.190.082679.693
Os07g0163500oryza_sativaOs07t0163500-0184.446873.1733sesamum_indicumSIN_1010882.t61.334353.1463
Os07g0163500oryza_sativaOs07t0163500-0190.292379.4363helianthus_annuusmRNA:HanXRQr2_Chr12g055934189.544578.7785
Os07g0163500oryza_sativaOs07t0163500-0187.160877.2443lactuca_sativacds-PLY90002.189.784979.5699
Os07g0163500oryza_sativaOs07t0163500-0196.659791.7537avena_sativa_sangAVESA.00010b.r2.2CG0289530.1.CDS96.257891.3721
Os07g0163500oryza_sativaOs07t0163500-0173.068970.0418avena_sativa_sangAVESA.00010b.r2.2DG0339530.1.CDS96.685192.6796
Os07g0163500oryza_sativaOs07t0163500-0167.745364.9269avena_sativa_sangAVESA.00010b.r2.2AG0211050.1.CDS96.865792.8358
Os07g0163500oryza_sativaOs07t0163500-0199.686899.4781oryza_longistaminataKN539089.1_FGP00598.25198.0453
Os07g0163500oryza_sativaOs07t0163500-0198.016797.9123oryza_rufipogonORUFI07G03730.183.170983.0824
Os07g0163500oryza_sativaOs07t0163500-0196.555391.5449avena_sativa_ot3098cds.AVESA.00001b.r3.2Dg0003189.596.153891.1642
Os07g0163500oryza_sativaOs07t0163500-0196.868591.6493avena_sativa_ot3098cds.AVESA.00001b.r3.2Ag0000645.291.881286.9307
Os07g0163500oryza_sativaOs07t0163500-0196.659791.7537avena_sativa_ot3098cds.AVESA.00001b.r3.2Cg0001334.496.257891.3721
Os07g0163500oryza_sativaOs07t0163500-0134.655534.1336oryza_punctataOPUNC07G03880.198.809597.3214
Os07g0163500oryza_sativaOs07t0163500-0198.434296.7641oryza_brachyanthaOB07G13030.198.331696.6632
Os07g0163500oryza_sativaOs07t0163500-0110099.6868oryza_glaberrimaORGLA07G0034300.110099.6868
Os07g0163500oryza_sativaOs07t0163500-0196.450991.858secale_cerealeSECCE2Rv1G0093500.196.049991.4761
Os07g0163500oryza_sativaOs07t0163500-0197.077292.1712lolium_perennecds.KYUSt_chr2.2815896.774291.8835
Os07g0163500oryza_sativaOs07t0163500-0196.972993.215setaria_italicaKQL2253896.269492.5389
Os07g0163500oryza_sativaOs07t0163500-0196.868593.1106setaria_viridisTKW3055596.165892.4352
Os07g0163500oryza_sativaOs07t0163500-0196.555391.6493sorghum_bicolorKXG3444695.954491.0788
Os07g0163500oryza_sativaOs07t0163500-0195.407190.9186triticum_turgidumTRITD2Av1G131520.695.010490.5405
Os07g0163500oryza_sativaOs07t0163500-0196.450992.0668triticum_turgidumTRITD2Bv1G118190.896.049991.684
Os07g0163500oryza_sativaOs07t0163500-0196.346692.0668triticum_aestivumTraesCS2D02G249200.195.945991.684
Os07g0163500oryza_sativaOs07t0163500-0196.450992.0668triticum_aestivumTraesCS2B02G263300.296.049991.684
Os07g0163500oryza_sativaOs07t0163500-0196.346691.858triticum_aestivumTraesCS2A02G246900.193.232388.8889
Os07g0163500oryza_sativaOs07t0163500-0196.450991.3361zea_maysZm00001eb117220_P00195.652290.5797
Os07g0163500oryza_sativaOs07t0163500-0190.187981.4196asparagus_officinalisONK7923389.164180.4954
Os07g0163500oryza_sativaOs07t0163500-0193.632686.5344ananas_comosusAco008760.1.mrna192.665385.6405
Os07g0163500oryza_sativaOs07t0163500-0117.954110.0209drosophila_melanogasterFBpp031247929.553316.4948
Os07g0163500oryza_sativaOs07t0163500-0196.242291.7537triticum_urartuTuG1812G0200002622.01.T0195.84291.3721
Os07g0163500oryza_sativaOs07t0163500-0196.450991.858brachypodium_distachyonKQK2080996.049991.4761
Os07g0163500oryza_sativaOs07t0163500-0117.745310.856homo_sapiensENSP0000028227628.667817.5379
Os07g0163500oryza_sativaOs07t0163500-0189.457279.6451vitis_viniferaVitvi13g01215_P00189.363979.562
Os07g0163500oryza_sativaOs07t0163500-0189.457279.9582vitis_viniferaVitvi14g00883_P00189.363979.8749
Os07g0163500oryza_sativaOs07t0163500-0185.073175.7829amborella_trichopodaERM9362488.683378.9989
Os07g0163500oryza_sativaOs07t0163500-0189.039780.3758ipomoea_trilobaitb01g28030.t187.757279.2181
Os07g0163500oryza_sativaOs07t0163500-0189.561680.3758fraxinus_excelsiorFRAEX38873_v2_000267450.1.cds88.544979.4634
Os07g0163500oryza_sativaOs07t0163500-0191.753787.5783eragrostis_curvulaTVU2199495.751691.3943
Os07g0163500oryza_sativaOs07t0163500-0112.630510.856arabis_alpinaKFK2419889.629677.037
Os07g0163500oryza_sativaOs07t0163500-0187.891477.7662arabis_alpinaKFK2590286.447676.4887
Os07g0163500oryza_sativaOs07t0163500-0119.728615.5532corylus_avellanaCav09g10050.t157.099745.0151
Os07g0163500oryza_sativaOs07t0163500-0187.787177.3486eutrema_salsugineumESQ4166586.34576.078
Os07g0163500oryza_sativaOs07t0163500-0184.759974.9478chenopodium_quinoaAUR62018211-RA:cds85.563875.6586
Os07g0163500oryza_sativaOs07t0163500-0171.294464.405chenopodium_quinoaAUR62038698-RA:cds88.015579.5103
Os07g0163500oryza_sativaOs07t0163500-0110099.6868oryza_barthiiOBART07G04030.197.95597.6483
Os07g0163500oryza_sativaOs07t0163500-0116.91029.39457saccharomyces_cerevisiaeYGR171C28.173915.6522
Os07g0163500oryza_sativaOs07t0163500-0178.079368.8935arabidopsis_lyratafgenesh1_pm.C_scaffold_600133067.938259.9455
Os07g0163500oryza_sativaOs07t0163500-0184.23877.5574musa_acuminataMa04_p29260.175.632669.6345
Os07g0163500oryza_sativaOs07t0163500-0196.659792.38panicum_halliiPUZ6848995.958591.7098
Os07g0163500oryza_sativaOs07t0163500-0113.56999.39457chara_brauniiGBG6965133.41923.1362
Os07g0163500oryza_sativaOs07t0163500-0179.645168.8935kalanchoe_fedtschenkoiKaladp0036s0160.1.v1.190.295978.1065
Os07g0163500oryza_sativaOs07t0163500-0189.561679.0188pistacia_veracds-EVM0018187.189.28278.7721
Os07g0163500oryza_sativaOs07t0163500-015041.9624pistacia_veracds-EVM0001596.168.821857.7586
Os07g0163500oryza_sativaOs07t0163500-0134.968730.3758dioscorea_rotundataDRNTG_23225.188.859477.1883
Os07g0163500oryza_sativaOs07t0163500-0155.219250dioscorea_rotundataDRNTG_23226.289.96681.4626
Os07g0163500oryza_sativaOs07t0163500-0196.242291.4405hordeum_vulgareHORVU.MOREX.r3.2HG0149510.195.84291.0603
Os07g0163500oryza_sativaOs07t0163500-0189.874779.0188citrus_clementinaESR4385089.594278.7721
Os07g0163500oryza_sativaOs07t0163500-0117.327810.4384quercus_subercds-POE63438.126.991916.2602
Os07g0163500oryza_sativaOs07t0163500-0114.61388.87265quercus_subercds-POE48392.131.74619.2744
Os07g0163500oryza_sativaOs07t0163500-0199.582599.1649oryza_glumipatulaOGLUM07G03430.197.946697.5359
Os07g0163500oryza_sativaOs07t0163500-0187.369577.1399eucalyptus_grandisKCW6936483.366573.6056
Os07g0163500oryza_sativaOs07t0163500-0188.622178.7056cynara_cardunculusKVI0311388.529778.6236
Os07g0163500oryza_sativaOs07t0163500-0190.187979.6451corymbia_citriodoracds-KAF8017179.189.072278.6598
Os07g0163500oryza_sativaOs07t0163500-0189.039778.0793quercus_lobataQL07p019084:mrna87.218876.4826
Os07g0163500oryza_sativaOs07t0163500-0189.874778.7056nicotiana_attenuataOIT0192288.671577.6519
Os07g0163500oryza_sativaOs07t0163500-0185.699474.0084nymphaea_colorataNC1G0105980.1:cds74.365964.221
Os07g0163500oryza_sativaOs07t0163500-0188.30978.0793rosa_chinensisPRQ5575387.03776.9547
Os07g0163500oryza_sativaOs07t0163500-0171.294467.9541triticum_dicoccoidesTRIDC2BG039020.1196.468991.9492
Os07g0163500oryza_sativaOs07t0163500-0194.780890.2923triticum_dicoccoidesTRIDC2AG034060.394.386789.9168
Os07g0163500oryza_sativaOs07t0163500-0190.396780.8977olea_europaeaOE9A052152C289.462880.062
Os07g0163500oryza_sativaOs07t0163500-017.515666.47182gossypium_raimondiiKJB1179587.804975.6098
Os07g0163500oryza_sativaOs07t0163500-0123.486417.6409gossypium_raimondiiKJB3915177.054857.8767
Os07g0163500oryza_sativaOs07t0163500-0111.27358.45511gossypium_raimondiiKJB532388060
Os07g0163500oryza_sativaOs07t0163500-0126.09623.1733gossypium_raimondiiKJB6894888.028278.169
Os07g0163500oryza_sativaOs07t0163500-0181.315271.7119gossypium_raimondiiKJB6874686.94276.6741
Os07g0163500oryza_sativaOs07t0163500-0124.321518.9979gossypium_raimondiiKJB1718677.926460.8696
Os07g0163500oryza_sativaOs07t0163500-0188.622178.0793trifolium_pratenseTp57577_TGAC_v2_mRNA3683786.898776.5609
Os07g0163500oryza_sativaOs07t0163500-0189.874780.5845corchorus_capsularisOMO5548189.130479.9172
Os07g0163500oryza_sativaOs07t0163500-0196.450992.4843eragrostis_tefEt_3B_030639.CDS96.551792.581
Os07g0163500oryza_sativaOs07t0163500-0196.137892.0668eragrostis_tefEt_3A_026275.CDS90.294186.4706
Os07g0163500oryza_sativaOs07t0163500-0115.44898.24635ciona_savignyiENSCSAVP0000001979327.458314.6568
Os07g0163500oryza_sativaOs07t0163500-0187.995878.2881brassica_rapa_ro18A10p029040.1_BraROA.171.259563.3981
Os07g0163500oryza_sativaOs07t0163500-0123.90423.0689saccharum_spontaneumSspon.02G0042260-1B-mRNA-1:cds93.469490.2041
Os07g0163500oryza_sativaOs07t0163500-0123.695221.7119saccharum_spontaneumSspon.02G0042240-3D-mRNA-194.979187.0293
Os07g0163500oryza_sativaOs07t0163500-0134.446831.3152saccharum_spontaneumSspon.02G0042240-1B-mRNA-192.178883.7989
Os07g0163500oryza_sativaOs07t0163500-0135.490627.0355galdieria_sulphurariaEME2608661.70647.0054
Os07g0163500oryza_sativaOs07t0163500-0164.300645.1983galdieria_sulphurariaEME2705260.215142.3265
Os07g0163500oryza_sativaOs07t0163500-0187.891477.9749brassica_oleraceaBo9g161880.166.825459.2857
Os07g0163500oryza_sativaOs07t0163500-0198.434297.0772leersia_perrieriLPERR07G03560.196.916895.5807
Os07g0163500oryza_sativaOs07t0163500-0187.265176.9311arabidopsis_hallerig00098.t186.363676.1364
Os07g0163500oryza_sativaOs07t0163500-0187.891477.3486camelina_sativaCsa20g024610.186.094175.7669
Os07g0163500oryza_sativaOs07t0163500-0187.995877.6618camelina_sativaCsa13g019510.185.410375.3799
Os07g0163500oryza_sativaOs07t0163500-0185.073175.0522camelina_sativaCsa08g008890.179.126269.8058
Os07g0163500oryza_sativaOs07t0163500-0193.110688.8309aegilops_tauschiiAET2Gv20556600.1987.795383.7598
Os07g0163500oryza_sativaOs07t0163500-0171.1953.8622ostreococcus_lucimarinusABO9772973.809555.8442
Os07g0163500oryza_sativaOs07t0163500-01100100oryza_indicaBGIOSGA025198-PA100100
Os07g0163500oryza_sativaOs07t0163500-0186.638876.7223prunus_aviumPav_sc0000464.1_g470.1.mk:mrna85.390975.6173
Os07g0163500oryza_sativaOs07t0163500-0189.248477.9749juglans_regiacds.Jr03_20450_p187.872676.7729
Os07g0163500oryza_sativaOs07t0163500-0185.386274.3215juglans_regiacds.Jr03_20460_p189.890178.2418
Os07g0163500oryza_sativaOs07t0163500-0185.386274.3215juglans_regiacds.Jr03_20470_p189.890178.2418
Os07g0163500oryza_sativaOs07t0163500-0189.248477.9749juglans_regiacds.Jr03_20480_p187.872676.7729
Os07g0163500oryza_sativaOs07t0163500-0185.699481.524digitaria_exilisDexi2B01G0003480.1:cds95.911291.2383
Os07g0163500oryza_sativaOs07t0163500-0196.868592.38digitaria_exilisDexi2A01G0003630.1:cds96.066391.6149
Os07g0163500oryza_sativaOs07t0163500-0199.582599.3737oryza_meridionalisOMERI07G02570.199.065498.8577
Os07g0163500oryza_sativaOs07t0163500-0186.012576.096actinidia_chinensisPSS2146485.300275.4658
Os07g0163500oryza_sativaOs07t0163500-0182.985471.7119daucus_carotaKZN1077888.137576.1641
Os07g0163500oryza_sativaOs07t0163500-0196.659791.858echinochloa_crusgalliscaffold409.37.cds95.958591.1917
Os07g0163500oryza_sativaOs07t0163500-0196.764192.5887echinochloa_crusgalliscaffold66.147.cds96.062291.9171
Os07g0163500oryza_sativaOs07t0163500-0196.764192.2756echinochloa_crusgalliscaffold28.605.cds96.062291.6062
Os07g0163500oryza_sativaOs07t0163500-0199.791299.4781oryza_nivaraONIVA07G02610.197.750597.4438
Os07g0163500oryza_sativaOs07t0163500-0130.375825.4697vigna_radiataVradi01g08780.189.814875.3086
Os07g0163500oryza_sativaOs07t0163500-0131.628426.7223vigna_radiataVradi01g08790.187.319973.7752

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0005739- mitochondrion1RCAOryza_sativa(39947)Component

Expression