| RBP Type |
N.A. |
| Diseases |
|
| Drug |
|
| Main interacting RNAs |
|
| Moonlighting functions |
|
| Localizations |
|
|
BulkPerturb-seq
|
|
| Ensembl ID | Os02g0481900 | Gene ID |
|
Accession |
- |
| Symbol |
OsXrn4-L |
Alias |
- |
Full Name |
Hypothetical conserved gene
|
| Status |
Confidence |
Length |
16479 bases |
Strand |
Plus strand |
| Position |
2 : 16617411 - 16633889 |
RNA binding domain |
XRN_N |
| Summary |
N.A. |
RNA binding domains (RBDs)
| Protein |
Domain |
Pfam ID |
E-value |
Domain number |
| Os02t0481900-02 |
XRN_N |
PF03159 |
1.9e-85 |
1 |
| Os02t0481900-01 |
XRN_N |
PF03159 |
1.3e-27 |
1 |
RNA binding proteomes (RBPomes)
| Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
| Pubmed ID |
Title |
Author |
Time |
Journal |
| Name |
Transcript ID |
bp |
Protein |
Translation ID |
| - |
Os02t0481900-02 |
2833 |
822aa |
Os02t0481900-02 |
| - |
Os02t0481900-01 |
1057 |
97aa |
Os02t0481900-01 |
| Pathway ID |
Pathway Name |
Source |
| | |
| ensgID |
Trait |
pValue |
Pubmed ID |
| ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
|---|
Protein-Protein Interaction (PPI)
| Ensembl ID |
Source |
Target |
| Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
| Os02g0481900 | oryza_sativa | Os03t0794800-01 | 43.7247 | 30.3644 | oryza_sativa | Os02t0481900-02 | 52.5547 | 36.4963 |
| Os02g0481900 | oryza_sativa | Os01t0872700-01 | 41.2921 | 29.6816 | oryza_sativa | Os02t0481900-02 | 53.6496 | 38.5645 |
| Os02g0481900 | oryza_sativa | Os07t0238700-01 | 42.8571 | 30.7692 | oryza_sativa | Os02t0481900-02 | 9.48905 | 6.81265 |
| Ensembl ID |
Source |
Target |
| Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 49.2701 | 34.9148 | chlamydomonas_reinhardtii | PNW72161 | 31.8898 | 22.5984 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 51.8248 | 36.4963 | physcomitrium_patens | Pp3c24_2160V3.1 | 38.1038 | 26.8336 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 53.163 | 37.5912 | physcomitrium_patens | Pp3c14_10280V3.2 | 43.7437 | 30.9309 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 13.747 | 8.15085 | papaver_somniferum | RZC53060 | 45.3815 | 26.9076 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 47.4453 | 32.2384 | cannabis_sativa_female | cds.evm.model.06.286 | 46.2633 | 31.4354 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 48.4185 | 32.6034 | cannabis_sativa_female | cds.evm.model.06.287 | 43.5926 | 29.3538 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 49.635 | 34.7932 | ficus_carica | FCD_00009639-RA:cds | 28.6517 | 20.0843 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 55.3528 | 39.781 | beta_vulgaris | KMT04929 | 47.7941 | 34.3487 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 49.7567 | 35.1581 | populus_trichocarpa | Potri.013G070200.1.v4.1 | 33.225 | 23.4768 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 51.8248 | 38.1995 | marchantia_polymorpha | PTQ31921 | 43.2487 | 31.8782 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 56.2044 | 38.9294 | prunus_dulcis | VVA38743 | 47.3846 | 32.8205 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 56.4477 | 39.4161 | prunus_persica | ONI01470 | 46.5863 | 32.5301 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 54.1363 | 37.2263 | cajanus_cajan | C.cajan_21678.t | 48.1602 | 33.1169 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 56.691 | 39.9027 | malus_domestica_golden | mRNA:MD11G0140400 | 47.7459 | 33.6066 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 50.365 | 34.0633 | lupinus_angustifolius | OIV99264 | 48.4778 | 32.7869 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 52.7981 | 37.7129 | medicago_truncatula | AES88286 | 51.3002 | 36.643 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 51.5815 | 36.7397 | pisum_sativum | Psat7g187120.1.cds | 49.0741 | 34.9537 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 54.6229 | 38.5645 | phaseolus_vulgaris | ESW04477 | 50 | 35.3007 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 54.9878 | 39.1727 | vigna_unguiculata | Vigun11g122900.7.v1.2 | 51.0734 | 36.3842 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 37.3479 | 23.7226 | glycine_max | KRH25301 | 40.2359 | 25.557 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 48.2968 | 34.4282 | glycine_max | KRH30371 | 46.9823 | 33.4911 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 53.528 | 36.7397 | vigna_angularis | KOM50500 | 46.9083 | 32.1962 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 52.7981 | 37.7129 | manihot_esculenta | OAY41649 | 25.6198 | 18.2999 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 52.9197 | 37.9562 | sesamum_indicum | SIN_1010603.t | 48.1195 | 34.5133 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 36.0097 | 23.4793 | helianthus_annuus | mRNA:HanXRQr2_Chr03g0137111 | 44.2451 | 28.849 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 17.8832 | 13.8686 | helianthus_annuus | mRNA:HanXRQr2_Chr03g0137101 | 58.5657 | 45.4183 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 45.1338 | 30.5353 | lactuca_sativa | cds-PLY81424.1 | 46.433 | 31.4143 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 51.2165 | 35.8881 | lactuca_sativa | cds-PLY81430.1 | 43.047 | 30.1636 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 9.12409 | 5.71776 | lactuca_sativa | cds-PLY71521.1 | 38.6598 | 24.2268 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 17.0316 | 16.91 | oryza_longistaminata | KN542311.1_FGP001 | 91.5033 | 90.8497 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 99.8783 | 99.7567 | oryza_rufipogon | ORUFI02G17480.1 | 99.8783 | 99.7567 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 94.1606 | 92.8224 | oryza_glaberrima | ORGLA02G0147000.1 | 95.9108 | 94.5477 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 77.9805 | 70.6813 | setaria_italica | KQK99808 | 82.0743 | 74.3918 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 81.3869 | 73.4793 | setaria_viridis | TKW07694 | 81.5854 | 73.6585 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 80.4136 | 72.2628 | sorghum_bicolor | KXG27661 | 82.1118 | 73.7888 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 78.1022 | 68.6131 | zea_mays | Zm00001eb427030_P002 | 77.2563 | 67.87 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 44.1606 | 30.5353 | asparagus_officinalis | ONK57501 | 42.9078 | 29.669 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 50 | 34.9148 | ananas_comosus | Aco029082.1.mrna1 | 48.9286 | 34.1667 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 52.0681 | 37.1046 | vitis_vinifera | Vitvi06g01557_P001 | 42.6295 | 30.3785 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 56.8127 | 39.781 | ipomoea_triloba | itb07g00700.t4 | 47.1241 | 32.997 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 54.3796 | 37.7129 | fraxinus_excelsior | FRAEX38873_v2_000231180.2.cds | 41.9718 | 29.108 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 69.8297 | 61.3139 | eragrostis_curvula | TVU40217 | 75.7256 | 66.4908 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 75.7908 | 66.545 | eragrostis_curvula | TVU13197 | 72.7804 | 63.9019 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 44.0389 | 29.562 | corylus_avellana | Cav10g04300.t1 | 47.1354 | 31.6406 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 55.1095 | 37.5912 | corylus_avellana | Cav10g04260.t1 | 47.7848 | 32.5949 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 55.3528 | 38.3212 | corylus_avellana | Cav10g04250.t1 | 49.1892 | 34.0541 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 11.6788 | 9.00243 | corylus_avellana | Cav10g04280.t1 | 58.8957 | 45.3988 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 54.3796 | 36.618 | corylus_avellana | Cav10g04270.t1 | 45.3347 | 30.5274 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 30.5353 | 21.5328 | chenopodium_quinoa | AUR62001541-RA:cds | 43.2759 | 30.5172 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 54.6229 | 40.0243 | chenopodium_quinoa | AUR62020242-RA:cds | 48.4358 | 35.4908 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 85.5231 | 84.3066 | oryza_barthii | OBART02G16710.1 | 96.3014 | 94.9315 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 48.6618 | 34.0633 | musa_acuminata | Ma04_p22280.1 | 46.2963 | 32.4074 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 79.8054 | 72.5061 | panicum_hallii | PUZ62863 | 80.9877 | 73.5802 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 48.1752 | 33.3333 | chara_braunii | GBG59981 | 34.2857 | 23.7229 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 30.6569 | 21.5328 | pistacia_vera | cds-EVM0017375.1 | 50 | 35.119 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 56.326 | 39.9027 | quercus_suber | cds-POF07911.1 | 49.6249 | 35.1554 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 88.1995 | 87.8345 | oryza_glumipatula | OGLUM02G17030.2 | 99.1792 | 98.7688 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 29.4404 | 21.1679 | cynara_cardunculus | KVH91260 | 50.5219 | 36.3257 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 50 | 35.5231 | cynara_cardunculus | KVH91258 | 43.6769 | 31.0308 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 57.6642 | 40.9976 | quercus_lobata | QL01p011327:mrna | 46.6535 | 33.1693 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 48.2968 | 34.7932 | nicotiana_attenuata | OIS97722 | 48.5924 | 35.0061 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 56.326 | 39.1727 | rosa_chinensis | PRQ56298 | 48.8912 | 34.0021 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 46.9586 | 32.9684 | rosa_chinensis | PRQ32584 | 60.7874 | 42.6772 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 52.0681 | 35.8881 | rosa_chinensis | PRQ32565 | 51.7533 | 35.6711 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 22.6277 | 15.2068 | rosa_chinensis | PRQ32548 | 53.2951 | 35.8166 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 46.837 | 32.9684 | rosa_chinensis | PRQ32551 | 55.6358 | 39.1618 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 55.2311 | 39.1727 | olea_europaea | OE9A100602C6 | 42.3507 | 30.0373 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 52.5547 | 38.3212 | gossypium_raimondii | KJB83658 | 50.5855 | 36.8852 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 51.7032 | 37.5912 | trifolium_pratense | Tp57577_TGAC_v2_mRNA4809 | 49.5916 | 36.056 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 48.2968 | 33.9416 | trifolium_pratense | Tp57577_TGAC_v2_mRNA4755 | 48.533 | 34.1076 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 53.6496 | 39.0511 | corchorus_capsularis | OMO89064 | 47.7273 | 34.7403 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 76.8856 | 67.0316 | eragrostis_tef | Et_5A_041294.CDS | 74.9703 | 65.3618 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 71.5328 | 62.8954 | eragrostis_tef | Et_5B_043974.CDS | 71.8826 | 63.2029 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 62.7737 | 56.691 | saccharum_spontaneum | Sspon.05G0020420-3C-mRNA-1:cds | 75.9941 | 68.6303 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 15.3285 | 13.747 | saccharum_spontaneum | Sspon.05G0020420-3P-mRNA-1:cds | 70 | 62.7778 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 46.472 | 32.3601 | ostreococcus_lucimarinus | ABO96597 | 47.6309 | 33.1671 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 95.8637 | 95.7421 | oryza_indica | BGIOSGA008212-PA | 99.7468 | 99.6203 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 9.00243 | 7.17762 | prunus_avium | Pav_sc0010118.1_g020.1.mk:mrna | 51.7483 | 41.2587 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 33.455 | 21.6545 | prunus_avium | Pav_sc0001142.1_g020.1.mk:mrna | 38.4078 | 24.8603 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 17.5182 | 10.4623 | prunus_avium | Pav_sc0003727.1_g010.1.mk:mrna | 42.2287 | 25.2199 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 8.39416 | 6.20438 | prunus_avium | Pav_sc0001142.1_g070.1.br:mrna | 55.6452 | 41.129 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 49.7567 | 35.7664 | juglans_regia | cds.Jr14_16140_p1 | 51.9036 | 37.3096 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 54.8662 | 39.2944 | juglans_regia | cds.Jr14_16160_p1 | 46.209 | 33.0943 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 50.4866 | 36.3747 | juglans_regia | cds.Jr14_16130_p1 | 53.8262 | 38.7808 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 49.7567 | 35.7664 | juglans_regia | cds.Jr14_16150_p1 | 51.9036 | 37.3096 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 49.8783 | 36.0097 | juglans_regia | cds.Jr14_16170_p1 | 52.0305 | 37.5635 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 56.326 | 39.9027 | coffea_canephora | CDP06859 | 49.9461 | 35.383 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 61.9221 | 54.1363 | digitaria_exilis | Dexi8A01G0002130.1:cds | 68.1392 | 59.5716 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 61.6788 | 53.7713 | digitaria_exilis | Dexi3A01G0002080.1:cds | 74.2313 | 64.7145 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 8.27251 | 7.66423 | digitaria_exilis | Dexi3B01G0002090.1:cds | 80.9524 | 75 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 55.5961 | 40.5109 | actinidia_chinensis | PSR86452 | 40.9132 | 29.812 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 53.4063 | 36.3747 | daucus_carota | KZN05342 | 43.9439 | 29.9299 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 44.1606 | 29.3187 | daucus_carota | KZN05343 | 43.3692 | 28.7933 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 81.5085 | 73.601 | echinochloa_crusgalli | scaffold70.131.cds | 52.0591 | 47.0085 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 90.0243 | 89.6594 | oryza_nivara | ONIVA02G18010.7 | 95.2381 | 94.852 |
| Os02g0481900 | oryza_sativa | Os02t0481900-02 | 41.9708 | 29.1971 | vigna_radiata | Vradi02g07410.1 | 44.9804 | 31.2907 |
| Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |
