Description

Ensembl ID Os01g0872700 Gene ID Accession -
Symbol OsXrn3 Alias - Full Name Zinc finger, CCHC-type domain containing protein
Status Confidence Length 7797 bases Strand Minus strand
Position 1 : 37844994 - 37852790 RNA binding domain XRN_N
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
Os01t0872700-01 XRN_N PF03159 6e-99 1
Os01t0872700-02 XRN_N PF03159 5.6e-90 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- Os01t0872700-01 3761 1068aa Os01t0872700-01
- Os01t0872700-03 1274 293aa Os01t0872700-03
- Os01t0872700-02 3474 1043aa Os01t0872700-02

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
Os01g0872700oryza_sativaOs07t0238700-0161.538546.1538oryza_sativaOs01t0872700-0110.48697.86517
Os01g0872700oryza_sativaOs03t0794800-0162.75353.1377oryza_sativaOs01t0872700-0158.052449.1573
Os01g0872700oryza_sativaOs02t0481900-0253.649638.5645oryza_sativaOs01t0872700-0141.292129.6816

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
Os01g0872700oryza_sativaOs01t0872700-0158.988845.7865chlamydomonas_reinhardtiiPNW7216149.606338.5039
Os01g0872700oryza_sativaOs01t0872700-0167.228556.7416physcomitrium_patensPp3c24_2160V3.164.221854.2039
Os01g0872700oryza_sativaOs01t0872700-0164.981353.9326physcomitrium_patensPp3c14_10280V3.269.469557.6577
Os01g0872700oryza_sativaOs01t0872700-0171.254762.0787papaver_somniferumRZC6448977.971367.9303
Os01g0872700oryza_sativaOs01t0872700-0172.659263.6704papaver_somniferumRZC5519375.339866.0194
Os01g0872700oryza_sativaOs01t0872700-0177.153668.8202cannabis_sativa_femalecds.evm.model.09.76476.79468.4995
Os01g0872700oryza_sativaOs01t0872700-0161.610555.0562ficus_caricaFCD_00003499-RA:cds88.203878.8204
Os01g0872700oryza_sativaOs01t0872700-0178.277269.4757citrullus_lanatusCla97C09G183380.176.207867.639
Os01g0872700oryza_sativaOs01t0872700-0127.153622.8464theobroma_cacaoEOY1424579.670367.033
Os01g0872700oryza_sativaOs01t0872700-0114.419512.3596theobroma_cacaoEOY2124281.481569.8413
Os01g0872700oryza_sativaOs01t0872700-0176.217266.6667theobroma_cacaoEOY1499773.333364.1441
Os01g0872700oryza_sativaOs01t0872700-0177.996369.4757cucumis_meloMELO3C002953.2.175.384667.1493
Os01g0872700oryza_sativaOs01t0872700-0177.902669.382cucumis_sativusKGN5117075.294167.0588
Os01g0872700oryza_sativaOs01t0872700-0177.80968.4457populus_trichocarpaPotri.005G237500.2.v4.175.408366.3339
Os01g0872700oryza_sativaOs01t0872700-0173.501964.5131populus_trichocarpaPotri.002G024100.3.v4.176.885467.4829
Os01g0872700oryza_sativaOs01t0872700-0164.79452.7154arabidopsis_thalianaAT5G42540.267.644255.0342
Os01g0872700oryza_sativaOs01t0872700-0172.471963.9513arabidopsis_thalianaAT1G75660.175.882466.9608
Os01g0872700oryza_sativaOs01t0872700-0165.355855.8989marchantia_polymorphaPTQ3192170.862960.6091
Os01g0872700oryza_sativaOs01t0872700-0164.79453.4644brassica_junceacds.BjuA06g00770S70.468458.1466
Os01g0872700oryza_sativaOs01t0872700-0172.846464.0449brassica_junceacds.BjuB05g03590S76.199866.9931
Os01g0872700oryza_sativaOs01t0872700-0116.760310.8614brassica_junceacds.BjuB03g10910S42.117627.2941
Os01g0872700oryza_sativaOs01t0872700-0172.565564.5131brassica_junceacds.BjuB03g14150S76.656868.1503
Os01g0872700oryza_sativaOs01t0872700-0172.659264.2322brassica_junceacds.BjuA07g34940S76.528667.6529
Os01g0872700oryza_sativaOs01t0872700-0173.22164.6067brassica_junceacds.BjuA02g21310S73.843265.1558
Os01g0872700oryza_sativaOs01t0872700-0165.730354.8689brassica_junceacds.BjuB02g50010S69.436257.9624
Os01g0872700oryza_sativaOs01t0872700-0173.127364.5131brassica_napusCDY3904675.240866.3776
Os01g0872700oryza_sativaOs01t0872700-0163.670452.5281brassica_napusCDY2238968.479456.4955
Os01g0872700oryza_sativaOs01t0872700-0171.16162.8277brassica_napusCDX7318575.697266.8327
Os01g0872700oryza_sativaOs01t0872700-0172.565564.1386brassica_napusCDY4750776.4367.5542
Os01g0872700oryza_sativaOs01t0872700-0173.22164.7004brassica_napusCDY1354875.922367.0874
Os01g0872700oryza_sativaOs01t0872700-0152.153642.5094brassica_napusCDY6113370.417257.3957
Os01g0872700oryza_sativaOs01t0872700-0177.340869.0075prunus_dulcisVVA2244677.268568.9429
Os01g0872700oryza_sativaOs01t0872700-0177.621769.2884prunus_persicaONI3243477.044668.7732
Os01g0872700oryza_sativaOs01t0872700-0174.906464.6067cajanus_cajanC.cajan_40993.t76.775466.2188
Os01g0872700oryza_sativaOs01t0872700-0177.715469.0075malus_domestica_goldenmRNA:MD08G001330077.861269.137
Os01g0872700oryza_sativaOs01t0872700-0177.80969.382malus_domestica_goldenmRNA:MD15G001180077.736269.3171
Os01g0872700oryza_sativaOs01t0872700-0176.685465.824lupinus_angustifoliusOIW1201978.7567.5962
Os01g0872700oryza_sativaOs01t0872700-0174.344664.8876lupinus_angustifoliusOIW1558577.012667.2163
Os01g0872700oryza_sativaOs01t0872700-0177.059965.0749pisum_sativumPsat6g003680.1.cds76.274364.4115
Os01g0872700oryza_sativaOs01t0872700-0122.003714.794pisum_sativumPsat7g089080.1.cds37.660325.3205
Os01g0872700oryza_sativaOs01t0872700-0177.621766.2921phaseolus_vulgarisESW3267477.694566.3543
Os01g0872700oryza_sativaOs01t0872700-0175.468264.794phaseolus_vulgarisESW2836376.253565.4683
Os01g0872700oryza_sativaOs01t0872700-0177.80966.6667vigna_unguiculataVigun08g008300.1.v1.277.374366.2942
Os01g0872700oryza_sativaOs01t0872700-017564.4195vigna_unguiculataVigun03g220000.1.v1.280.502569.1457
Os01g0872700oryza_sativaOs01t0872700-0178.277267.3221glycine_maxKRH0592978.203967.2591
Os01g0872700oryza_sativaOs01t0872700-0178.183566.7603glycine_maxKRH1740877.674466.3256
Os01g0872700oryza_sativaOs01t0872700-016.367045.52434glycine_maxKRH1203476.404566.2921
Os01g0872700oryza_sativaOs01t0872700-0173.408262.7341vigna_angularisKOM3201678.009966.6667
Os01g0872700oryza_sativaOs01t0872700-0177.902666.0112vigna_angularisKOM4909276.894665.1571
Os01g0872700oryza_sativaOs01t0872700-0178.558169.8502manihot_esculentaOAY5060174.051265.8429
Os01g0872700oryza_sativaOs01t0872700-0152.902645.1311capsicum_annuumPHT6657367.583757.6555
Os01g0872700oryza_sativaOs01t0872700-0123.501921.6292capsicum_annuumPHT9449991.605884.3066
Os01g0872700oryza_sativaOs01t0872700-0176.685468.3521capsicum_annuumPHT8493175.623367.4054
Os01g0872700oryza_sativaOs01t0872700-0174.250963.5768solanum_lycopersicumSolyc12g089280.2.171.057460.8423
Os01g0872700oryza_sativaOs01t0872700-0177.153668.5393solanum_lycopersicumSolyc04g081280.3.174.301266.0054
Os01g0872700oryza_sativaOs01t0872700-0177.153668.633solanum_tuberosumPGSC0003DMT40000955074.977266.697
Os01g0872700oryza_sativaOs01t0872700-0178.277269.6629sesamum_indicumSIN_1002364.t76.069267.6979
Os01g0872700oryza_sativaOs01t0872700-0173.033762.9213helianthus_annuusmRNA:HanXRQr2_Chr14g062323165.217456.1873
Os01g0872700oryza_sativaOs01t0872700-017567.2285helianthus_annuusmRNA:HanXRQr2_Chr15g068119180.909172.5253
Os01g0872700oryza_sativaOs01t0872700-0177.153669.0075helianthus_annuusmRNA:HanXRQr2_Chr12g055682179.154770.7973
Os01g0872700oryza_sativaOs01t0872700-0171.910162.7341lactuca_sativacds-PLY82688.171.910162.7341
Os01g0872700oryza_sativaOs01t0872700-0175.374567.7903lactuca_sativacds-PLY80710.177.329569.5485
Os01g0872700oryza_sativaOs01t0872700-0197.19197.191oryza_longistaminataKN539016.1_FGP01497.373497.3734
Os01g0872700oryza_sativaOs01t0872700-0199.906499.9064oryza_rufipogonORUFI01G42230.199.906499.9064
Os01g0872700oryza_sativaOs01t0872700-0199.438299.0637oryza_punctataOPUNC01G37630.199.531499.1565
Os01g0872700oryza_sativaOs01t0872700-0197.19195.5056oryza_brachyanthaOB01G47560.197.373495.6848
Os01g0872700oryza_sativaOs01t0872700-0199.719199.7191oryza_glaberrimaORGLA01G0327800.199.719199.7191
Os01g0872700oryza_sativaOs01t0872700-0192.790388.5768setaria_italicaKQL0384092.271988.0819
Os01g0872700oryza_sativaOs01t0872700-0192.790388.2022setaria_viridisTKW1273492.271987.7095
Os01g0872700oryza_sativaOs01t0872700-0192.228587.6404sorghum_bicolorEES0272192.401587.8049
Os01g0872700oryza_sativaOs01t0872700-019.831469.17603triticum_turgidumTRITD2Bv1G022580.195.454589.0909
Os01g0872700oryza_sativaOs01t0872700-0191.385886.1423zea_maysZm00001eb127930_P00391.557286.3039
Os01g0872700oryza_sativaOs01t0872700-0165.074958.8015asparagus_officinalisONK8047978.442470.8804
Os01g0872700oryza_sativaOs01t0872700-0161.516955.3371asparagus_officinalisONK6459981.920273.6908
Os01g0872700oryza_sativaOs01t0872700-0181.928873.6891ananas_comosusAco014861.1.mrna178.545870.6463
Os01g0872700oryza_sativaOs01t0872700-0177.715469.5693vitis_viniferaVitvi18g01096_P00177.934369.7653
Os01g0872700oryza_sativaOs01t0872700-018.52067.49064vitis_viniferaVitvi08g00093_P00181.2571.4286
Os01g0872700oryza_sativaOs01t0872700-016.367045.89888vitis_viniferaVitvi08g00094_P0018074.1176
Os01g0872700oryza_sativaOs01t0872700-0128.651722.9401amborella_trichopodaERN1229039.740331.8182
Os01g0872700oryza_sativaOs01t0872700-0155.430748.97amborella_trichopodaERM9897984.813874.9284
Os01g0872700oryza_sativaOs01t0872700-0176.966368.9139ipomoea_trilobaitb01g35070.t176.181668.2113
Os01g0872700oryza_sativaOs01t0872700-0170.599361.985fraxinus_excelsiorFRAEX38873_v2_000387870.1.cds73.489364.5224
Os01g0872700oryza_sativaOs01t0872700-0175.936366.9476fraxinus_excelsiorFRAEX38873_v2_000149200.1.cds74.746565.8986
Os01g0872700oryza_sativaOs01t0872700-0189.513184.6442eragrostis_curvulaTVU2253482.770678.2684
Os01g0872700oryza_sativaOs01t0872700-0188.01583.6142eragrostis_curvulaTVU2249489.866285.3728
Os01g0872700oryza_sativaOs01t0872700-0173.314665.0749arabis_alpinaKFK4199975.945767.4103
Os01g0872700oryza_sativaOs01t0872700-0163.108651.4981arabis_alpinaKFK3291969.91757.0539
Os01g0872700oryza_sativaOs01t0872700-0173.689165.4494eutrema_salsugineumESQ2757276.930668.3284
Os01g0872700oryza_sativaOs01t0872700-0164.419553.839eutrema_salsugineumESQ3537776.274963.7472
Os01g0872700oryza_sativaOs01t0872700-0199.719199.7191oryza_barthiiOBART01G38860.199.719199.7191
Os01g0872700oryza_sativaOs01t0872700-0164.887653.1835arabidopsis_lyratascaffold_800897.165.81253.9411
Os01g0872700oryza_sativaOs01t0872700-0181.460772.9401musa_acuminataMa08_p07140.178.449170.2435
Os01g0872700oryza_sativaOs01t0872700-0191.853986.1423panicum_halliiPUZ5740291.596685.901
Os01g0872700oryza_sativaOs01t0872700-0161.516950chara_brauniiGBG5998156.883146.2338
Os01g0872700oryza_sativaOs01t0872700-0172.378364.5131kalanchoe_fedtschenkoiKaladp0095s0694.1.v1.176.007967.7483
Os01g0872700oryza_sativaOs01t0872700-0176.966368.3521kalanchoe_fedtschenkoiKaladp0053s0163.1.v1.174.863466.4845
Os01g0872700oryza_sativaOs01t0872700-0177.621768.9139pistacia_veracds-EVM0017237.173.039664.8458
Os01g0872700oryza_sativaOs01t0872700-0174.157362.8277pistacia_veracds-EVM0024616.268.275957.8448
Os01g0872700oryza_sativaOs01t0872700-0147.471943.4457dioscorea_rotundataDRNTG_27830.192.014584.2105
Os01g0872700oryza_sativaOs01t0872700-0113.202212.1723hordeum_vulgareHORVU.MOREX.r3.3HG0273640.192.156984.9673
Os01g0872700oryza_sativaOs01t0872700-0178.277269.8502citrus_clementinaESR4839574.443566.4292
Os01g0872700oryza_sativaOs01t0872700-0141.947630.618quercus_subercds-POE61442.134.355825.0767
Os01g0872700oryza_sativaOs01t0872700-0127.996326.03quercus_subercds-POF20663.193.730487.1473
Os01g0872700oryza_sativaOs01t0872700-0199.719199.7191oryza_glumipatulaOGLUM01G43120.199.719199.7191
Os01g0872700oryza_sativaOs01t0872700-0178.464469.1011eucalyptus_grandisKCW6794178.098868.7791
Os01g0872700oryza_sativaOs01t0872700-0172.659265.1685cynara_cardunculusKVH9639175.633567.8363
Os01g0872700oryza_sativaOs01t0872700-0164.044956.5543cynara_cardunculusKVI0776757.721550.9705
Os01g0872700oryza_sativaOs01t0872700-0179.213569.4757corymbia_citriodoracds-KAF8022714.178.116368.5134
Os01g0872700oryza_sativaOs01t0872700-0178.183569.0075quercus_lobataQL02p011305:mrna76.395267.4291
Os01g0872700oryza_sativaOs01t0872700-0176.591868.0712nymphaea_colorataNC9G0168110.1:cds76.09367.6279
Os01g0872700oryza_sativaOs01t0872700-0177.715469.8502rosa_chinensisPRQ2718279.654571.5931
Os01g0872700oryza_sativaOs01t0872700-0172.284663.5768rosa_chinensisPRQ2907877.822668.4476
Os01g0872700oryza_sativaOs01t0872700-0177.434568.2584olea_europaeaOE9A027403C276.08167.0653
Os01g0872700oryza_sativaOs01t0872700-0176.217266.1049olea_europaeaOE9A109453C274.542164.652
Os01g0872700oryza_sativaOs01t0872700-017.95887.30337gossypium_raimondiiKJB2410788.541781.25
Os01g0872700oryza_sativaOs01t0872700-0169.850261.0487trifolium_pratenseTp57577_TGAC_v2_mRNA3554274.081464.7468
Os01g0872700oryza_sativaOs01t0872700-0116.104912.9213trifolium_pratenseTp57577_TGAC_v2_mRNA4088071.966557.7406
Os01g0872700oryza_sativaOs01t0872700-0110.48699.26966trifolium_pratenseTp57577_TGAC_v2_mRNA737376.712367.8082
Os01g0872700oryza_sativaOs01t0872700-0166.947656.367trifolium_pratenseTp57577_TGAC_v2_mRNA550979.888367.2626
Os01g0872700oryza_sativaOs01t0872700-0123.314619.382trifolium_pratenseTp57577_TGAC_v2_mRNA1960184.121669.9324
Os01g0872700oryza_sativaOs01t0872700-0131.36726.6854trifolium_pratenseTp57577_TGAC_v2_mRNA1501275.963764.6258
Os01g0872700oryza_sativaOs01t0872700-0155.524350.1873corchorus_capsularisOMO8744189.57780.9668
Os01g0872700oryza_sativaOs01t0872700-0144.38238.2022corchorus_capsularisOMO6887366.293757.0629
Os01g0872700oryza_sativaOs01t0872700-0116.57313.2022corchorus_capsularisOMO8743854.461543.3846
Os01g0872700oryza_sativaOs01t0872700-0188.576883.7079eragrostis_tefEt_3B_030272.CDS91.049186.0443
Os01g0872700oryza_sativaOs01t0872700-0186.23681.8352eragrostis_tefEt_3A_025582.CDS90.918186.2784
Os01g0872700oryza_sativaOs01t0872700-0169.101160.6742brassica_rapa_ro18A02p028280.1_BraROA.175.152765.9878
Os01g0872700oryza_sativaOs01t0872700-0161.516950.2809brassica_rapa_ro18A06p057250.1_BraROA.168.940256.3484
Os01g0872700oryza_sativaOs01t0872700-0172.752864.2322brassica_rapa_ro18A07p048270.1_BraROA.176.551767.5862
Os01g0872700oryza_sativaOs01t0872700-0120.973819.1011saccharum_spontaneumSspon.03G0017280-2D-mRNA-144.007940.0786
Os01g0872700oryza_sativaOs01t0872700-0113.108612.7341saccharum_spontaneumSspon.03G0017270-1A-mRNA-1:cds91.503388.8889
Os01g0872700oryza_sativaOs01t0872700-0172.659264.1386brassica_oleraceaBo6g119770.176.302867.355
Os01g0872700oryza_sativaOs01t0872700-0143.913934.0824brassica_oleraceaBo4g078390.160.360446.8468
Os01g0872700oryza_sativaOs01t0872700-0173.22164.8876brassica_oleraceaBo2g085220.175.848767.2163
Os01g0872700oryza_sativaOs01t0872700-0190.730388.2959leersia_perrieriLPERR01G33450.194.169191.6424
Os01g0872700oryza_sativaOs01t0872700-0164.700452.809arabidopsis_hallerig25374.t168.619756.0079
Os01g0872700oryza_sativaOs01t0872700-0173.314664.2322arabidopsis_hallerig01109.t175.360966.025
Os01g0872700oryza_sativaOs01t0872700-0173.033764.6067camelina_sativaCsa07g047120.175.581466.8605
Os01g0872700oryza_sativaOs01t0872700-0164.887652.6217camelina_sativaCsa20g063280.168.818355.8093
Os01g0872700oryza_sativaOs01t0872700-0164.606752.9026camelina_sativaCsa11g073740.168.520456.1073
Os01g0872700oryza_sativaOs01t0872700-0171.254762.8277camelina_sativaCsa16g039580.170.332762.0148
Os01g0872700oryza_sativaOs01t0872700-0148.782839.7004camelina_sativaCsa18g012420.169.374256.4581
Os01g0872700oryza_sativaOs01t0872700-0173.22164.7004camelina_sativaCsa09g080270.174.904266.1877
Os01g0872700oryza_sativaOs01t0872700-0150.374539.1386ostreococcus_lucimarinusABO9659767.082352.1197
Os01g0872700oryza_sativaOs01t0872700-0199.812799.7191oryza_indicaBGIOSGA000413-PA99.812799.7191
Os01g0872700oryza_sativaOs01t0872700-0166.385858.8015juglans_regiacds.Jr11_20110_p186.463476.5854
Os01g0872700oryza_sativaOs01t0872700-0167.509459.5506juglans_regiacds.Jr11_20100_p184.923474.9117
Os01g0872700oryza_sativaOs01t0872700-0167.509459.5506juglans_regiacds.Jr11_20090_p184.525274.5604
Os01g0872700oryza_sativaOs01t0872700-0177.80968.633juglans_regiacds.Jr08_08420_p17566.1552
Os01g0872700oryza_sativaOs01t0872700-0178.745368.4457coffea_canephoraCDP0741477.440167.3112
Os01g0872700oryza_sativaOs01t0872700-0168.352165.2622digitaria_exilisDexi5A01G0011600.1:cds91.022486.9077
Os01g0872700oryza_sativaOs01t0872700-0170.41267.4157digitaria_exilisDexi5B01G0011940.1:cds90.493486.6426
Os01g0872700oryza_sativaOs01t0872700-0199.531899.0637oryza_meridionalisOMERI01G35790.199.531899.0637
Os01g0872700oryza_sativaOs01t0872700-0149.344643.4457actinidia_chinensisPSS1715873.706364.8951
Os01g0872700oryza_sativaOs01t0872700-0179.026270.7865actinidia_chinensisPSR9960177.431269.3578
Os01g0872700oryza_sativaOs01t0872700-0117.228514.4195actinidia_chinensisPSS3126647.792240
Os01g0872700oryza_sativaOs01t0872700-0173.876464.794daucus_carotaKZM9877978.821269.1309
Os01g0872700oryza_sativaOs01t0872700-016.741576.17978daucus_carotaKZM8016597.297389.1892
Os01g0872700oryza_sativaOs01t0872700-0146.067437.0787daucus_carotaKZN0491166.757153.7313
Os01g0872700oryza_sativaOs01t0872700-0169.38261.8914daucus_carotaKZM9423476.628768.3557
Os01g0872700oryza_sativaOs01t0872700-0192.790388.015echinochloa_crusgalliscaffold54.310.cds92.616887.8505
Os01g0872700oryza_sativaOs01t0872700-0192.790388.2022echinochloa_crusgalliscaffold109.144.cds92.616888.0374
Os01g0872700oryza_sativaOs01t0872700-0192.60388.015echinochloa_crusgalliscaffold259.126.cds85.776281.5265
Os01g0872700oryza_sativaOs01t0872700-0199.812799.8127oryza_nivaraONIVA01G43690.199.812799.8127
Os01g0872700oryza_sativaOs01t0872700-0174.625563.4831vigna_radiataVradi07g02880.177.079365.5706
Os01g0872700oryza_sativaOs01t0872700-0177.902666.1985vigna_radiataVradi06g16690.172.918561.9632

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression