RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	Ma08_g33540	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	19520 bases	Strand	Minus strand
Position	CAJGYN010000008.1 : 43798661 - 43818180	RNA binding domain	IBN_N , CRM1_C , Xpo1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
Ma08_p33540	IBN_N	PF03810	6.4e-17	1
Ma08_p33540	CRM1_C	PF08767	1.3e-126	2
Ma08_p33540	Xpo1	PF08389	4.3e-40	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	Ma08_t33540.1	4154	1075aa	Ma08_p33540.1

Gene Model

Click here to download Ma08_g33540's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download Ma08_g33540's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
Ma08_g33540

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
Ma08_g33540

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression