RBPWorld - a comprehensive database of RNA Binding Proteins

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Description

Ensembl ID	Ma04_g16610	Gene ID		Accession	-
Symbol		Alias	-	Full Name	Splicing factor SF3a60 homolog
Status	Confidence	Length	11339 bases	Strand	Minus strand
Position	CAJGYN010000004.1 : 16031458 - 16042796	RNA binding domain	SF3a60_Prp9_C , SF3a60_bindingd
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
Ma04_p16610	SF3a60_Prp9_C	PF11931	2.2e-54	1
Ma04_p16610	SF3a60_bindingd	PF12108	3.3e-12	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	Ma04_t16610.1	1793	507aa	Ma04_p16610.1

Gene Model

Click here to download Ma04_g16610's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download Ma04_g16610's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
Ma04_g16610

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
Ma04_g16610

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression