Description

Ensembl ID MGP_WSBEiJ_G0029399 Gene ID Accession -
Symbol Srrt Alias - Full Name serrate RNA effector molecule homolog (Arabidopsis)
Status Confidence Length 11965 bases Strand Minus strand
Position 5 : 140835861 - 140847825 RNA binding domain ARS2 , SERRATE_Ars2_N
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_WSBEiJ_P0073928 ARS2 PF04959 2.2e-89 1
MGP_WSBEiJ_P0073928 SERRATE_Ars2_N PF12066 2.4e-40 2
MGP_WSBEiJ_P0073929 ARS2 PF04959 8.2e-89 1
MGP_WSBEiJ_P0073929 SERRATE_Ars2_N PF12066 2.4e-40 2
MGP_WSBEiJ_P0073932 ARS2 PF04959 1.9e-88 1
MGP_WSBEiJ_P0073931 ARS2 PF04959 4.1e-88 1
MGP_WSBEiJ_P0073927 ARS2 PF04959 1.1e-87 1
MGP_WSBEiJ_P0073927 SERRATE_Ars2_N PF12066 2.4e-40 2
MGP_WSBEiJ_P0073930 SERRATE_Ars2_N PF12066 9.1e-41 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Srrt-001 MGP_WSBEiJ_T0073927 3018 875aa MGP_WSBEiJ_P0073927"/note="transcript_id=MGP_WSBEiJ_T0073927
- MGP_WSBEiJ_T0073928 2982 868aa MGP_WSBEiJ_P0073928"/note="transcript_id=MGP_WSBEiJ_T0073928
- MGP_WSBEiJ_T0073929 2966 864aa MGP_WSBEiJ_P0073929"/note="transcript_id=MGP_WSBEiJ_T0073929
- MGP_WSBEiJ_T0073930 3001 467aa MGP_WSBEiJ_P0073930"/note="transcript_id=MGP_WSBEiJ_T0073930
- MGP_WSBEiJ_T0073931 1660 517aa MGP_WSBEiJ_P0073931"/note="transcript_id=MGP_WSBEiJ_T0073931
- MGP_WSBEiJ_T0073932 808 268aa MGP_WSBEiJ_P0073932"/note="transcript_id=MGP_WSBEiJ_T0073932
- MGP_WSBEiJ_T0073933 666 No protein -
- MGP_WSBEiJ_T0073934 835 No protein -
- MGP_WSBEiJ_T0073935 416 No protein -
- MGP_WSBEiJ_T0073936 884 No protein -
- MGP_WSBEiJ_T0073937 600 No protein -
- MGP_WSBEiJ_T0073938 599 51aa MGP_WSBEiJ_P0073938"/note="transcript_id=MGP_WSBEiJ_T0073938
- MGP_WSBEiJ_T0073939 931 238aa MGP_WSBEiJ_P0073939"/note="transcript_id=MGP_WSBEiJ_T0073939
- MGP_WSBEiJ_T0073940 516 No protein -
- MGP_WSBEiJ_T0073941 2004 No protein -
- MGP_WSBEiJ_T0073942 767 No protein -
- MGP_WSBEiJ_T0073943 470 50aa MGP_WSBEiJ_P0073943"/note="transcript_id=MGP_WSBEiJ_T0073943

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_WSBEiJ_G0029399

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_WSBEiJ_G0029399mus_musculus_wsbeijMGP_WSBEiJ_P0073927100100mus_musculus_129s1svimjMGP_129S1SvImJ_P0075138100100
MGP_WSBEiJ_G0029399mus_musculus_wsbeijMGP_WSBEiJ_P0073927100100mus_caroliMGP_CAROLIEiJ_P0071468100100
MGP_WSBEiJ_G0029399mus_musculus_wsbeijMGP_WSBEiJ_P0073927100100mus_musculus_ajMGP_AJ_P0075222100100
MGP_WSBEiJ_G0029399mus_musculus_wsbeijMGP_WSBEiJ_P0073927100100mus_musculus_c3hhejMGP_C3HHeJ_P0074794100100
MGP_WSBEiJ_G0029399mus_musculus_wsbeijMGP_WSBEiJ_P0073927100100mus_musculus_balbcjMGP_BALBcJ_P0075165100100
MGP_WSBEiJ_G0029399mus_musculus_wsbeijMGP_WSBEiJ_P0073927100100mus_musculus_c57bl6njMGP_C57BL6NJ_P0075630100100
MGP_WSBEiJ_G0029399mus_musculus_wsbeijMGP_WSBEiJ_P0073927100100mus_musculus_fvbnjMGP_FVBNJ_P0074790100100
MGP_WSBEiJ_G0029399mus_musculus_wsbeijMGP_WSBEiJ_P0073927100100mus_musculus_dba2jMGP_DBA2J_P0074890100100
MGP_WSBEiJ_G0029399mus_musculus_wsbeijMGP_WSBEiJ_P0073927100100mus_musculus_nodshiltjMGP_NODShiLtJ_P0074793100100
MGP_WSBEiJ_G0029399mus_musculus_wsbeijMGP_WSBEiJ_P0073927100100mus_musculus_akrjMGP_AKRJ_P0075124100100
MGP_WSBEiJ_G0029399mus_musculus_wsbeijMGP_WSBEiJ_P007392798.057197.4857rattus_norvegicusENSRNOP0000009493498.961998.3852
MGP_WSBEiJ_G0029399mus_musculus_wsbeijMGP_WSBEiJ_P0073927100100mus_musculus_lpjMGP_LPJ_P0074947100100
MGP_WSBEiJ_G0029399mus_musculus_wsbeijMGP_WSBEiJ_P0073927100100mus_musculus_cbajMGP_CBAJ_P0074743100100
MGP_WSBEiJ_G0029399mus_musculus_wsbeijMGP_WSBEiJ_P007392710099.7714mus_spicilegusENSMSIP0000001150910099.7714
MGP_WSBEiJ_G0029399mus_musculus_wsbeijMGP_WSBEiJ_P0073927100100mus_musculus_nzohlltjMGP_NZOHlLtJ_P0075872100100
MGP_WSBEiJ_G0029399mus_musculus_wsbeijMGP_WSBEiJ_P0073927100100mus_musculusENSMUSP00000043123100100
MGP_WSBEiJ_G0029399mus_musculus_wsbeijMGP_WSBEiJ_P007392799.298.8571mus_pahariMGP_PahariEiJ_P005975999.298.8571
MGP_WSBEiJ_G0029399mus_musculus_wsbeijMGP_WSBEiJ_P007392799.885799.8857mus_musculus_pwkphjMGP_PWKPhJ_P007480599.885799.8857
MGP_WSBEiJ_G0029399mus_musculus_wsbeijMGP_WSBEiJ_P0073927100100mus_spretusMGP_SPRETEiJ_P0074282100100
MGP_WSBEiJ_G0029399mus_musculus_wsbeijMGP_WSBEiJ_P007392710099.8857mus_musculus_casteijMGP_CASTEiJ_P007534610099.8857

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression