RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | MGP_WSBEiJ_G0029399 | Gene ID |
|
Accession |
- |
Symbol |
Srrt |
Alias |
- |
Full Name |
serrate RNA effector molecule homolog (Arabidopsis) |
Status |
Confidence |
Length |
11965 bases |
Strand |
Minus strand |
Position |
5 : 140835861 - 140847825 |
RNA binding domain |
ARS2 , SERRATE_Ars2_N |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
MGP_WSBEiJ_P0073928 |
ARS2 |
PF04959 |
2.2e-89 |
1 |
MGP_WSBEiJ_P0073928 |
SERRATE_Ars2_N |
PF12066 |
2.4e-40 |
2 |
MGP_WSBEiJ_P0073929 |
ARS2 |
PF04959 |
8.2e-89 |
1 |
MGP_WSBEiJ_P0073929 |
SERRATE_Ars2_N |
PF12066 |
2.4e-40 |
2 |
MGP_WSBEiJ_P0073932 |
ARS2 |
PF04959 |
1.9e-88 |
1 |
MGP_WSBEiJ_P0073931 |
ARS2 |
PF04959 |
4.1e-88 |
1 |
MGP_WSBEiJ_P0073927 |
ARS2 |
PF04959 |
1.1e-87 |
1 |
MGP_WSBEiJ_P0073927 |
SERRATE_Ars2_N |
PF12066 |
2.4e-40 |
2 |
MGP_WSBEiJ_P0073930 |
SERRATE_Ars2_N |
PF12066 |
9.1e-41 |
1 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
Srrt-001 |
MGP_WSBEiJ_T0073927 |
3018 |
875aa |
MGP_WSBEiJ_P0073927"/note="transcript_id=MGP_WSBEiJ_T0073927 |
- |
MGP_WSBEiJ_T0073928 |
2982 |
868aa |
MGP_WSBEiJ_P0073928"/note="transcript_id=MGP_WSBEiJ_T0073928 |
- |
MGP_WSBEiJ_T0073929 |
2966 |
864aa |
MGP_WSBEiJ_P0073929"/note="transcript_id=MGP_WSBEiJ_T0073929 |
- |
MGP_WSBEiJ_T0073930 |
3001 |
467aa |
MGP_WSBEiJ_P0073930"/note="transcript_id=MGP_WSBEiJ_T0073930 |
- |
MGP_WSBEiJ_T0073931 |
1660 |
517aa |
MGP_WSBEiJ_P0073931"/note="transcript_id=MGP_WSBEiJ_T0073931 |
- |
MGP_WSBEiJ_T0073932 |
808 |
268aa |
MGP_WSBEiJ_P0073932"/note="transcript_id=MGP_WSBEiJ_T0073932 |
- |
MGP_WSBEiJ_T0073933 |
666 |
No protein |
- |
- |
MGP_WSBEiJ_T0073934 |
835 |
No protein |
- |
- |
MGP_WSBEiJ_T0073935 |
416 |
No protein |
- |
- |
MGP_WSBEiJ_T0073936 |
884 |
No protein |
- |
- |
MGP_WSBEiJ_T0073937 |
600 |
No protein |
- |
- |
MGP_WSBEiJ_T0073938 |
599 |
51aa |
MGP_WSBEiJ_P0073938"/note="transcript_id=MGP_WSBEiJ_T0073938 |
- |
MGP_WSBEiJ_T0073939 |
931 |
238aa |
MGP_WSBEiJ_P0073939"/note="transcript_id=MGP_WSBEiJ_T0073939 |
- |
MGP_WSBEiJ_T0073940 |
516 |
No protein |
- |
- |
MGP_WSBEiJ_T0073941 |
2004 |
No protein |
- |
- |
MGP_WSBEiJ_T0073942 |
767 |
No protein |
- |
- |
MGP_WSBEiJ_T0073943 |
470 |
50aa |
MGP_WSBEiJ_P0073943"/note="transcript_id=MGP_WSBEiJ_T0073943 |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_WSBEiJ_G0029399 | | | | | | | | |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_WSBEiJ_G0029399 | mus_musculus_wsbeij | MGP_WSBEiJ_P0073927 | 100 | 100 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0075138 | 100 | 100 |
MGP_WSBEiJ_G0029399 | mus_musculus_wsbeij | MGP_WSBEiJ_P0073927 | 100 | 100 | mus_caroli | MGP_CAROLIEiJ_P0071468 | 100 | 100 |
MGP_WSBEiJ_G0029399 | mus_musculus_wsbeij | MGP_WSBEiJ_P0073927 | 100 | 100 | mus_musculus_aj | MGP_AJ_P0075222 | 100 | 100 |
MGP_WSBEiJ_G0029399 | mus_musculus_wsbeij | MGP_WSBEiJ_P0073927 | 100 | 100 | mus_musculus_c3hhej | MGP_C3HHeJ_P0074794 | 100 | 100 |
MGP_WSBEiJ_G0029399 | mus_musculus_wsbeij | MGP_WSBEiJ_P0073927 | 100 | 100 | mus_musculus_balbcj | MGP_BALBcJ_P0075165 | 100 | 100 |
MGP_WSBEiJ_G0029399 | mus_musculus_wsbeij | MGP_WSBEiJ_P0073927 | 100 | 100 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0075630 | 100 | 100 |
MGP_WSBEiJ_G0029399 | mus_musculus_wsbeij | MGP_WSBEiJ_P0073927 | 100 | 100 | mus_musculus_fvbnj | MGP_FVBNJ_P0074790 | 100 | 100 |
MGP_WSBEiJ_G0029399 | mus_musculus_wsbeij | MGP_WSBEiJ_P0073927 | 100 | 100 | mus_musculus_dba2j | MGP_DBA2J_P0074890 | 100 | 100 |
MGP_WSBEiJ_G0029399 | mus_musculus_wsbeij | MGP_WSBEiJ_P0073927 | 100 | 100 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0074793 | 100 | 100 |
MGP_WSBEiJ_G0029399 | mus_musculus_wsbeij | MGP_WSBEiJ_P0073927 | 100 | 100 | mus_musculus_akrj | MGP_AKRJ_P0075124 | 100 | 100 |
MGP_WSBEiJ_G0029399 | mus_musculus_wsbeij | MGP_WSBEiJ_P0073927 | 98.0571 | 97.4857 | rattus_norvegicus | ENSRNOP00000094934 | 98.9619 | 98.3852 |
MGP_WSBEiJ_G0029399 | mus_musculus_wsbeij | MGP_WSBEiJ_P0073927 | 100 | 100 | mus_musculus_lpj | MGP_LPJ_P0074947 | 100 | 100 |
MGP_WSBEiJ_G0029399 | mus_musculus_wsbeij | MGP_WSBEiJ_P0073927 | 100 | 100 | mus_musculus_cbaj | MGP_CBAJ_P0074743 | 100 | 100 |
MGP_WSBEiJ_G0029399 | mus_musculus_wsbeij | MGP_WSBEiJ_P0073927 | 100 | 99.7714 | mus_spicilegus | ENSMSIP00000011509 | 100 | 99.7714 |
MGP_WSBEiJ_G0029399 | mus_musculus_wsbeij | MGP_WSBEiJ_P0073927 | 100 | 100 | mus_musculus_nzohlltj | MGP_NZOHlLtJ_P0075872 | 100 | 100 |
MGP_WSBEiJ_G0029399 | mus_musculus_wsbeij | MGP_WSBEiJ_P0073927 | 100 | 100 | mus_musculus | ENSMUSP00000043123 | 100 | 100 |
MGP_WSBEiJ_G0029399 | mus_musculus_wsbeij | MGP_WSBEiJ_P0073927 | 99.2 | 98.8571 | mus_pahari | MGP_PahariEiJ_P0059759 | 99.2 | 98.8571 |
MGP_WSBEiJ_G0029399 | mus_musculus_wsbeij | MGP_WSBEiJ_P0073927 | 99.8857 | 99.8857 | mus_musculus_pwkphj | MGP_PWKPhJ_P0074805 | 99.8857 | 99.8857 |
MGP_WSBEiJ_G0029399 | mus_musculus_wsbeij | MGP_WSBEiJ_P0073927 | 100 | 100 | mus_spretus | MGP_SPRETEiJ_P0074282 | 100 | 100 |
MGP_WSBEiJ_G0029399 | mus_musculus_wsbeij | MGP_WSBEiJ_P0073927 | 100 | 99.8857 | mus_musculus_casteij | MGP_CASTEiJ_P0075346 | 100 | 99.8857 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |