RBPWorld - a comprehensive database of RNA Binding Proteins

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Description

Ensembl ID	MGP_WSBEiJ_G0027467	Gene ID		Accession	-
Symbol	Tdrd7	Alias	-	Full Name	tudor domain containing 7
Status	Confidence	Length	74243 bases	Strand	Plus strand
Position	4 : 43783780 - 43858022	RNA binding domain	OST-HTH , TUDOR
Summary	N.A.

RNA binding domains (RBDs)

Search:

Protein	Domain	Pfam ID	E-value	Domain number
MGP_WSBEiJ_P0064433	OST-HTH	PF12872	3.4e-17	1
MGP_WSBEiJ_P0064433	OST-HTH	PF12872	3.4e-17	2
MGP_WSBEiJ_P0064433	TUDOR	PF00567	1e-84	3
MGP_WSBEiJ_P0064433	TUDOR	PF00567	1e-84	4
MGP_WSBEiJ_P0064433	TUDOR	PF00567	1e-84	5
MGP_WSBEiJ_P0064434	OST-HTH	PF12872	3.1e-17	1
MGP_WSBEiJ_P0064434	OST-HTH	PF12872	3.1e-17	2
MGP_WSBEiJ_P0064434	TUDOR	PF00567	9e-85	3
MGP_WSBEiJ_P0064434	TUDOR	PF00567	9e-85	4
MGP_WSBEiJ_P0064434	TUDOR	PF00567	9e-85	5

Showing 1 to 10 of 10 entries

Transcripts

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Search:

Name	Transcript ID	bp	Protein	Translation ID
-	MGP_WSBEiJ_T0064434	3725	1086aa	MGP_WSBEiJ_P0064434"/note="transcript_id=MGP_WSBEiJ_T0064434
-	MGP_WSBEiJ_T0064435	260	No protein	-
-	MGP_WSBEiJ_T0064436	618	No protein	-
-	MGP_WSBEiJ_T0064437	525	No protein	-
Tdrd7-001	MGP_WSBEiJ_T0064433	3655	1119aa	MGP_WSBEiJ_P0064433"/note="transcript_id=MGP_WSBEiJ_T0064433

Showing 1 to 5 of 5 entries

Gene Model

Click here to download MGP_WSBEiJ_G0027467's gene model file

Protein-Protein Interaction (PPI)

Click here to download MGP_WSBEiJ_G0027467's PPI file

Paralogs

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Search:

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_WSBEiJ_G0027467	mus_musculus_wsbeij	MGP_WSBEiJ_P0022114	22.1154	11.0577	mus_musculus_wsbeij	MGP_WSBEiJ_P0064433	20.5541	10.277
MGP_WSBEiJ_G0027467	mus_musculus_wsbeij	MGP_WSBEiJ_P0051175	28.5836	16.5529	mus_musculus_wsbeij	MGP_WSBEiJ_P0064433	29.9374	17.3369
MGP_WSBEiJ_G0027467	mus_musculus_wsbeij	MGP_WSBEiJ_P0061106	29.4643	16.4286	mus_musculus_wsbeij	MGP_WSBEiJ_P0064433	14.7453	8.22163
MGP_WSBEiJ_G0027467	mus_musculus_wsbeij	MGP_WSBEiJ_P0046775	16.1124	9.274	mus_musculus_wsbeij	MGP_WSBEiJ_P0064433	30.7417	17.6944

Showing 1 to 4 of 4 entries

Orthologs

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Search:

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_WSBEiJ_G0027467	mus_musculus_wsbeij	MGP_WSBEiJ_P0064433	100	99.9106	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0065573	100	99.9106
MGP_WSBEiJ_G0027467	mus_musculus_wsbeij	MGP_WSBEiJ_P0064433	99.1063	98.2127	mus_caroli	MGP_CAROLIEiJ_P0062226	99.1063	98.2127
MGP_WSBEiJ_G0027467	mus_musculus_wsbeij	MGP_WSBEiJ_P0064433	100	99.9106	mus_musculus_aj	MGP_AJ_P0065628	100	99.9106
MGP_WSBEiJ_G0027467	mus_musculus_wsbeij	MGP_WSBEiJ_P0064433	100	99.9106	mus_musculus_c3hhej	MGP_C3HHeJ_P0065228	100	99.9106
MGP_WSBEiJ_G0027467	mus_musculus_wsbeij	MGP_WSBEiJ_P0064433	100	99.9106	mus_musculus_balbcj	MGP_BALBcJ_P0065557	100	99.9106
MGP_WSBEiJ_G0027467	mus_musculus_wsbeij	MGP_WSBEiJ_P0064433	100	99.9106	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0066027	100	99.9106
MGP_WSBEiJ_G0027467	mus_musculus_wsbeij	MGP_WSBEiJ_P0064433	100	99.9106	mus_musculus_fvbnj	MGP_FVBNJ_P0065237	100	99.9106
MGP_WSBEiJ_G0027467	mus_musculus_wsbeij	MGP_WSBEiJ_P0064433	100	99.9106	mus_musculus_dba2j	MGP_DBA2J_P0065308	100	99.9106
MGP_WSBEiJ_G0027467	mus_musculus_wsbeij	MGP_WSBEiJ_P0064433	100	99.9106	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0065218	100	99.9106
MGP_WSBEiJ_G0027467	mus_musculus_wsbeij	MGP_WSBEiJ_P0064433	100	99.9106	mus_musculus_akrj	MGP_AKRJ_P0065517	100	99.9106

Showing 1 to 10 of 20 entries

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Contents

Description
RBDs
Transcripts
Gene Model
PPI
Paralogs
Orthologs