RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	MGP_SPRETEiJ_G0034558	Gene ID		Accession	-
Symbol		Alias	-	Full Name	ribosomal protein L36A, pseudogene 1
Status	Confidence	Length	2416 bases	Strand	Plus strand
Position	X : 113362089 - 113364504	RNA binding domain	Ribosomal_L44
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
MGP_SPRETEiJ_P0096435	Ribosomal_L44	PF00935	1.5e-34	1
MGP_SPRETEiJ_P0096437	Ribosomal_L44	PF00935	3.3e-05	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	MGP_SPRETEiJ_T0096435	483	106aa	MGP_SPRETEiJ_P0096435"/note="transcript_id=MGP_SPRETEiJ_T0096435
-	MGP_SPRETEiJ_T0096436	812	No protein	-
-	MGP_SPRETEiJ_T0096437	452	67aa	MGP_SPRETEiJ_P0096437"/note="transcript_id=MGP_SPRETEiJ_T0096437
-	MGP_SPRETEiJ_T0096438	770	No protein	-
-	MGP_SPRETEiJ_T0096439	614	No protein	-
-	MGP_SPRETEiJ_T0096440	555	No protein	-

Gene Model

Click here to download MGP_SPRETEiJ_G0034558's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download MGP_SPRETEiJ_G0034558's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0053749	100	100	mus_spretus	MGP_SPRETEiJ_P0096435	100	100
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0060498	97.1698	95.283	mus_spretus	MGP_SPRETEiJ_P0096435	97.1698	95.283

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	100	100	mus_caroli	MGP_CAROLIEiJ_P0092673	100	100
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	100	100	mus_pahari	MGP_PahariEiJ_P0090286	100	100
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	100	100	mus_spicilegus	ENSMSIP00000034272	100	100
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	95.283	93.3962	rattus_norvegicus	ENSRNOP00000042127	95.283	93.3962
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	100	99.0566	sarcophilus_harrisii	ENSSHAP00000027853	48.8479	48.3871
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	100	100	dasypus_novemcinctus	ENSDNOP00000012370	79.1045	79.1045
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	59.434	57.5472	erinaceus_europaeus	ENSEEUP00000014297	60	58.0952
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	98.1132	97.1698	cercocebus_atys	ENSCATP00000007369	98.1132	97.1698
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	98.1132	98.1132	cercocebus_atys	ENSCATP00000000891	98.1132	98.1132
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	99.0566	96.2264	macaca_nemestrina	ENSMNEP00000006251	99.0566	96.2264
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	98.1132	96.2264	papio_anubis	ENSPANP00000000221	98.1132	96.2264
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	97.1698	97.1698	mandrillus_leucophaeus	ENSMLEP00000003574	97.1698	97.1698
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	100	99.0566	pan_troglodytes	ENSPTRP00000010705	61.9883	61.4035
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	100	100	vulpes_vulpes	ENSVVUP00000042028	100	100
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	100	100	ursus_americanus	ENSUAMP00000027532	74.6479	74.6479
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	100	100	panthera_pardus	ENSPPRP00000026338	74.6479	74.6479
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	100	100	tursiops_truncatus	ENSTTRP00000012122	100	100
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	98.1132	98.1132	delphinapterus_leucas	ENSDLEP00000028882	98.1132	98.1132
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	100	100	physeter_catodon	ENSPCTP00005009096	74.6479	74.6479
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	100	100	balaenoptera_musculus	ENSBMSP00010015614	100	100
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	100	100	equus_asinus	ENSEASP00005011126	79.1045	79.1045
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	99.0566	99.0566	procavia_capensis	ENSPCAP00000001023	100	100
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	100	100	sus_scrofa	ENSSSCP00000048712	74.6479	74.6479
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	100	100	sus_scrofa	ENSSSCP00000017960	100	100
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	95.283	92.4528	bos_taurus	ENSBTAP00000045188	97.1154	94.2308
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	97.1698	96.2264	camelus_dromedarius	ENSCDRP00005019105	66.8831	66.2338
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	100	100	marmota_marmota_marmota	ENSMMMP00000003303	100	100
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	96.2264	91.5094	marmota_marmota_marmota	ENSMMMP00000007019	96.2264	91.5094
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	99.0566	99.0566	dipodomys_ordii	ENSDORP00000026796	99.0566	99.0566
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	100	100	mesocricetus_auratus	ENSMAUP00000024378	100	100
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	96.2264	96.2264	otolemur_garnettii	ENSOGAP00000017659	96.2264	96.2264
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	100	100	tupaia_belangeri	ENSTBEP00000004016	100	100
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	94.3396	92.4528	cervus_hanglu_yarkandensis	ENSCHYP00000026046	78.125	76.5625
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	100	100	microtus_ochrogaster	ENSMOCP00000002285	100	100
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	100	100	moschus_moschiferus	ENSMMSP00000014505	40.1515	40.1515
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	97.1698	94.3396	myotis_lucifugus	ENSMLUP00000012638	97.1698	94.3396
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	95.283	92.4528	bos_indicus_hybrid	ENSBIXP00005045438	97.1154	94.2308
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	99.0566	99.0566	saimiri_boliviensis_boliviensis	ENSSBOP00000003547	99.0566	99.0566
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	100	100	octodon_degus	ENSODEP00000003445	100	100
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	100	99.0566	octodon_degus	ENSODEP00000026592	100	99.0566
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	98.1132	97.1698	monodon_monoceros	ENSMMNP00015018093	98.1132	97.1698
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	100	100	rhinolophus_ferrumequinum	ENSRFEP00010001560	74.6479	74.6479
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	100	100	bos_mutus	ENSBMUP00000015116	74.6479	74.6479
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	99.0566	99.0566	bos_mutus	ENSBMUP00000003973	99.0566	99.0566
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	100	100	jaculus_jaculus	ENSJJAP00000015907	100	100
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	100	100	ictidomys_tridecemlineatus	ENSSTOP00000016260	100	100
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	100	100	cavia_porcellus	ENSCPOP00000008206	100	100
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	100	100	prolemur_simus	ENSPSMP00000002269	76.259	76.259
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	95.283	92.4528	bison_bison_bison	ENSBBBP00000010495	97.1154	94.2308
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	100	100	canis_lupus_dingo	ENSCAFP00020028019	100	100
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	100	100	rhinopithecus_roxellana	ENSRROP00000007478	100	100
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	99.0566	96.2264	sorex_araneus	ENSSARP00000001952	99.0566	96.2264
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	98.1132	96.2264	phocoena_sinus	ENSPSNP00000015626	64.5963	63.354
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	98.1132	98.1132	cebus_imitator	ENSCCAP00000027335	98.1132	98.1132
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	77.3585	77.3585	nomascus_leucogenys	ENSNLEP00000026092	94.2529	94.2529
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	96.2264	95.283	peromyscus_maniculatus_bairdii	ENSPEMP00000031942	76.6917	75.9398
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	92.4528	91.5094	rhinopithecus_bieti	ENSRBIP00000035978	97.0297	96.0396
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	100	100	rhinopithecus_bieti	ENSRBIP00000039085	74.6479	74.6479
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	99.0566	99.0566	bos_grunniens	ENSBGRP00000006139	99.0566	99.0566
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	96.2264	91.5094	callorhinchus_milii	ENSCMIP00000004264	67.5497	64.2384
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	52.8302	45.283	astyanax_mexicanus	ENSAMXP00000027880	80	68.5714
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	95.283	92.4528	poecilia_reticulata	ENSPREP00000018725	71.1268	69.0141
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	99.0566	99.0566	oryzias_latipes	ENSORLP00000030741	61.4035	61.4035
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	99.0566	96.2264	xenopus_tropicalis	ENSXETP00000111246	99.0566	96.2264
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	96.2264	94.3396	crocodylus_porosus	ENSCPRP00005013477	97.1429	95.2381
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	99.0566	96.2264	sphenodon_punctatus	ENSSPUP00000022774	100	97.1429
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	99.0566	98.1132	geospiza_fortis	ENSGFOP00000003384	100	99.0476
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	53.7736	47.1698	anolis_carolinensis	ENSACAP00000024226	68.6747	60.241
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	98.1132	96.2264	hippocampus_comes	ENSHCOP00000021191	98.1132	96.2264
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	97.1698	94.3396	salvator_merianae	ENSSMRP00000016923	76.2963	74.0741
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	82.0755	79.2453	podarcis_muralis	ENSPMRP00000017654	53.3742	51.5337
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	98.1132	96.2264	amphiprion_percula	ENSAPEP00000006826	98.1132	96.2264
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	95.283	94.3396	seriola_dumerili	ENSSDUP00000006752	69.1781	68.4931
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	63.2075	58.4906	labrus_bergylta	ENSLBEP00000005280	49.6296	45.9259
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	97.1698	94.3396	denticeps_clupeoides	ENSDCDP00000026378	28.3747	27.5482
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	96.2264	91.5094	leptobrachium_leishanense	ENSLLEP00000027703	77.2727	73.4848
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	96.2264	92.4528	cyprinus_carpio_carpio	ENSCCRP00000152734	59.6491	57.3099
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	98.1132	97.1698	stegastes_partitus	ENSSPAP00000013755	67.0968	66.4516
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	95.283	92.4528	erpetoichthys_calabaricus	ENSECRP00000019663	75.9398	73.6842
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	98.1132	95.283	betta_splendens	ENSBSLP00000053840	63.4146	61.5854
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	97.1698	95.283	amphiprion_ocellaris	ENSAOCP00000015454	88.7931	87.069
MGP_SPRETEiJ_G0034558	mus_spretus	MGP_SPRETEiJ_P0096435	99.0566	98.1132	anser_brachyrhynchus	ENSABRP00000000761	100	99.0476

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

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RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression