Description

Ensembl ID MGP_PWKPhJ_G0026693 Gene ID Accession -
Symbol Rtca Alias - Full Name RNA 3'-terminal phosphate cyclase
Status Confidence Length 19697 bases Strand Minus strand
Position 3 : 113401050 - 113420746 RNA binding domain RTC_insert , RTC
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_PWKPhJ_P0062859 RTC_insert PF05189 1.2e-25 1
MGP_PWKPhJ_P0062859 RTC PF01137 4.1e-86 2
MGP_PWKPhJ_P0062862 RTC_insert PF05189 5.1e-11 1
MGP_PWKPhJ_P0062862 RTC PF01137 2.3e-23 2
MGP_PWKPhJ_P0062863 RTC PF01137 1.1e-32 1
MGP_PWKPhJ_P0062861 RTC PF01137 2e-12 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Rtca-001 MGP_PWKPhJ_T0062859 1594 366aa MGP_PWKPhJ_P0062859"/note="transcript_id=MGP_PWKPhJ_T0062859
- MGP_PWKPhJ_T0062860 629 No protein -
- MGP_PWKPhJ_T0062861 876 52aa MGP_PWKPhJ_P0062861"/note="transcript_id=MGP_PWKPhJ_T0062861
- MGP_PWKPhJ_T0062862 712 142aa MGP_PWKPhJ_P0062862"/note="transcript_id=MGP_PWKPhJ_T0062862
- MGP_PWKPhJ_T0062863 737 113aa MGP_PWKPhJ_P0062863"/note="transcript_id=MGP_PWKPhJ_T0062863

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_PWKPhJ_G0026693mus_musculus_pwkphjMGP_PWKPhJ_P005089144.235926.2735mus_musculus_pwkphjMGP_PWKPhJ_P006285945.08226.776

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_PWKPhJ_G0026693mus_musculus_pwkphjMGP_PWKPhJ_P0062859100100mus_caroliMGP_CAROLIEiJ_P0060121100100
MGP_PWKPhJ_G0026693mus_musculus_pwkphjMGP_PWKPhJ_P006285999.726899.4536mus_musculus_129s1svimjMGP_129S1SvImJ_P006337899.726899.4536
MGP_PWKPhJ_G0026693mus_musculus_pwkphjMGP_PWKPhJ_P006285999.726899.4536mus_musculus_ajMGP_AJ_P006340199.726899.4536
MGP_PWKPhJ_G0026693mus_musculus_pwkphjMGP_PWKPhJ_P006285999.726899.4536mus_musculus_c3hhejMGP_C3HHeJ_P006301499.726899.4536
MGP_PWKPhJ_G0026693mus_musculus_pwkphjMGP_PWKPhJ_P006285999.726899.4536mus_musculus_cbajMGP_CBAJ_P006297699.726899.4536
MGP_PWKPhJ_G0026693mus_musculus_pwkphjMGP_PWKPhJ_P006285999.726899.4536mus_musculus_balbcjMGP_BALBcJ_P006332699.726899.4536
MGP_PWKPhJ_G0026693mus_musculus_pwkphjMGP_PWKPhJ_P006285999.726899.4536mus_musculus_fvbnjMGP_FVBNJ_P006305299.726899.4536
MGP_PWKPhJ_G0026693mus_musculus_pwkphjMGP_PWKPhJ_P006285999.726899.4536mus_musculus_c57bl6njMGP_C57BL6NJ_P006381799.726899.4536
MGP_PWKPhJ_G0026693mus_musculus_pwkphjMGP_PWKPhJ_P006285999.453699.4536mus_musculus_nodshiltjMGP_NODShiLtJ_P006304599.453699.4536
MGP_PWKPhJ_G0026693mus_musculus_pwkphjMGP_PWKPhJ_P006285910099.7268mus_pahariMGP_PahariEiJ_P007106310099.7268
MGP_PWKPhJ_G0026693mus_musculus_pwkphjMGP_PWKPhJ_P006285999.726899.4536mus_musculus_nzohlltjMGP_NZOHlLtJ_P006403599.726899.4536
MGP_PWKPhJ_G0026693mus_musculus_pwkphjMGP_PWKPhJ_P006285999.726899.4536mus_musculus_dba2jMGP_DBA2J_P006308899.726899.4536
MGP_PWKPhJ_G0026693mus_musculus_pwkphjMGP_PWKPhJ_P0062859100100mus_musculus_casteijMGP_CASTEiJ_P0063314100100
MGP_PWKPhJ_G0026693mus_musculus_pwkphjMGP_PWKPhJ_P006285999.726899.4536mus_musculus_akrjMGP_AKRJ_P006333699.726899.4536
MGP_PWKPhJ_G0026693mus_musculus_pwkphjMGP_PWKPhJ_P0062859100100mus_spicilegusENSMSIP0000000608470.656470.6564
MGP_PWKPhJ_G0026693mus_musculus_pwkphjMGP_PWKPhJ_P006285999.726898.3607rattus_norvegicusENSRNOP0000009119599.726898.3607
MGP_PWKPhJ_G0026693mus_musculus_pwkphjMGP_PWKPhJ_P006285999.726899.4536mus_musculus_lpjMGP_LPJ_P006323199.726899.4536
MGP_PWKPhJ_G0026693mus_musculus_pwkphjMGP_PWKPhJ_P006285999.726899.7268mus_spretusMGP_SPRETEiJ_P006251399.726899.7268
MGP_PWKPhJ_G0026693mus_musculus_pwkphjMGP_PWKPhJ_P006285999.453699.4536mus_musculus_wsbeijMGP_WSBEiJ_P006227999.453699.4536
MGP_PWKPhJ_G0026693mus_musculus_pwkphjMGP_PWKPhJ_P006285999.726899.4536mus_musculusENSMUSP0000000034899.726899.4536

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression