RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | MGP_PWKPhJ_G0026693 | Gene ID |
|
Accession |
- |
Symbol |
Rtca |
Alias |
- |
Full Name |
RNA 3'-terminal phosphate cyclase |
Status |
Confidence |
Length |
19697 bases |
Strand |
Minus strand |
Position |
3 : 113401050 - 113420746 |
RNA binding domain |
RTC_insert , RTC |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
MGP_PWKPhJ_P0062859 |
RTC_insert |
PF05189 |
1.2e-25 |
1 |
MGP_PWKPhJ_P0062859 |
RTC |
PF01137 |
4.1e-86 |
2 |
MGP_PWKPhJ_P0062862 |
RTC_insert |
PF05189 |
5.1e-11 |
1 |
MGP_PWKPhJ_P0062862 |
RTC |
PF01137 |
2.3e-23 |
2 |
MGP_PWKPhJ_P0062863 |
RTC |
PF01137 |
1.1e-32 |
1 |
MGP_PWKPhJ_P0062861 |
RTC |
PF01137 |
2e-12 |
1 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
Rtca-001 |
MGP_PWKPhJ_T0062859 |
1594 |
366aa |
MGP_PWKPhJ_P0062859"/note="transcript_id=MGP_PWKPhJ_T0062859 |
- |
MGP_PWKPhJ_T0062860 |
629 |
No protein |
- |
- |
MGP_PWKPhJ_T0062861 |
876 |
52aa |
MGP_PWKPhJ_P0062861"/note="transcript_id=MGP_PWKPhJ_T0062861 |
- |
MGP_PWKPhJ_T0062862 |
712 |
142aa |
MGP_PWKPhJ_P0062862"/note="transcript_id=MGP_PWKPhJ_T0062862 |
- |
MGP_PWKPhJ_T0062863 |
737 |
113aa |
MGP_PWKPhJ_P0062863"/note="transcript_id=MGP_PWKPhJ_T0062863 |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_PWKPhJ_G0026693 | mus_musculus_pwkphj | MGP_PWKPhJ_P0050891 | 44.2359 | 26.2735 | mus_musculus_pwkphj | MGP_PWKPhJ_P0062859 | 45.082 | 26.776 |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_PWKPhJ_G0026693 | mus_musculus_pwkphj | MGP_PWKPhJ_P0062859 | 100 | 100 | mus_caroli | MGP_CAROLIEiJ_P0060121 | 100 | 100 |
MGP_PWKPhJ_G0026693 | mus_musculus_pwkphj | MGP_PWKPhJ_P0062859 | 99.7268 | 99.4536 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0063378 | 99.7268 | 99.4536 |
MGP_PWKPhJ_G0026693 | mus_musculus_pwkphj | MGP_PWKPhJ_P0062859 | 99.7268 | 99.4536 | mus_musculus_aj | MGP_AJ_P0063401 | 99.7268 | 99.4536 |
MGP_PWKPhJ_G0026693 | mus_musculus_pwkphj | MGP_PWKPhJ_P0062859 | 99.7268 | 99.4536 | mus_musculus_c3hhej | MGP_C3HHeJ_P0063014 | 99.7268 | 99.4536 |
MGP_PWKPhJ_G0026693 | mus_musculus_pwkphj | MGP_PWKPhJ_P0062859 | 99.7268 | 99.4536 | mus_musculus_cbaj | MGP_CBAJ_P0062976 | 99.7268 | 99.4536 |
MGP_PWKPhJ_G0026693 | mus_musculus_pwkphj | MGP_PWKPhJ_P0062859 | 99.7268 | 99.4536 | mus_musculus_balbcj | MGP_BALBcJ_P0063326 | 99.7268 | 99.4536 |
MGP_PWKPhJ_G0026693 | mus_musculus_pwkphj | MGP_PWKPhJ_P0062859 | 99.7268 | 99.4536 | mus_musculus_fvbnj | MGP_FVBNJ_P0063052 | 99.7268 | 99.4536 |
MGP_PWKPhJ_G0026693 | mus_musculus_pwkphj | MGP_PWKPhJ_P0062859 | 99.7268 | 99.4536 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0063817 | 99.7268 | 99.4536 |
MGP_PWKPhJ_G0026693 | mus_musculus_pwkphj | MGP_PWKPhJ_P0062859 | 99.4536 | 99.4536 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0063045 | 99.4536 | 99.4536 |
MGP_PWKPhJ_G0026693 | mus_musculus_pwkphj | MGP_PWKPhJ_P0062859 | 100 | 99.7268 | mus_pahari | MGP_PahariEiJ_P0071063 | 100 | 99.7268 |
MGP_PWKPhJ_G0026693 | mus_musculus_pwkphj | MGP_PWKPhJ_P0062859 | 99.7268 | 99.4536 | mus_musculus_nzohlltj | MGP_NZOHlLtJ_P0064035 | 99.7268 | 99.4536 |
MGP_PWKPhJ_G0026693 | mus_musculus_pwkphj | MGP_PWKPhJ_P0062859 | 99.7268 | 99.4536 | mus_musculus_dba2j | MGP_DBA2J_P0063088 | 99.7268 | 99.4536 |
MGP_PWKPhJ_G0026693 | mus_musculus_pwkphj | MGP_PWKPhJ_P0062859 | 100 | 100 | mus_musculus_casteij | MGP_CASTEiJ_P0063314 | 100 | 100 |
MGP_PWKPhJ_G0026693 | mus_musculus_pwkphj | MGP_PWKPhJ_P0062859 | 99.7268 | 99.4536 | mus_musculus_akrj | MGP_AKRJ_P0063336 | 99.7268 | 99.4536 |
MGP_PWKPhJ_G0026693 | mus_musculus_pwkphj | MGP_PWKPhJ_P0062859 | 100 | 100 | mus_spicilegus | ENSMSIP00000006084 | 70.6564 | 70.6564 |
MGP_PWKPhJ_G0026693 | mus_musculus_pwkphj | MGP_PWKPhJ_P0062859 | 99.7268 | 98.3607 | rattus_norvegicus | ENSRNOP00000091195 | 99.7268 | 98.3607 |
MGP_PWKPhJ_G0026693 | mus_musculus_pwkphj | MGP_PWKPhJ_P0062859 | 99.7268 | 99.4536 | mus_musculus_lpj | MGP_LPJ_P0063231 | 99.7268 | 99.4536 |
MGP_PWKPhJ_G0026693 | mus_musculus_pwkphj | MGP_PWKPhJ_P0062859 | 99.7268 | 99.7268 | mus_spretus | MGP_SPRETEiJ_P0062513 | 99.7268 | 99.7268 |
MGP_PWKPhJ_G0026693 | mus_musculus_pwkphj | MGP_PWKPhJ_P0062859 | 99.4536 | 99.4536 | mus_musculus_wsbeij | MGP_WSBEiJ_P0062279 | 99.4536 | 99.4536 |
MGP_PWKPhJ_G0026693 | mus_musculus_pwkphj | MGP_PWKPhJ_P0062859 | 99.7268 | 99.4536 | mus_musculus | ENSMUSP00000000348 | 99.7268 | 99.4536 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |