RBPWorld - a comprehensive database of RNA Binding Proteins

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Description

Ensembl ID	MGP_PWKPhJ_G0022759	Gene ID		Accession	-
Symbol	Polr1c	Alias	-	Full Name	polymerase (RNA) I polypeptide C
Status	Confidence	Length	4185 bases	Strand	Minus strand
Position	17 : 44260995 - 44265179	RNA binding domain	RNA_pol_A_bac , RNA_pol_L
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
MGP_PWKPhJ_P0047232	RNA_pol_A_bac	PF01000	9.8e-31	1
MGP_PWKPhJ_P0047232	RNA_pol_L	PF01193	2.8e-10	2
MGP_PWKPhJ_P0047234	RNA_pol_A_bac	PF01000	1e-30	1
MGP_PWKPhJ_P0047234	RNA_pol_L	PF01193	5.5e-08	2
MGP_PWKPhJ_P0047230	RNA_pol_A_bac	PF01000	1.9e-30	1
MGP_PWKPhJ_P0047230	RNA_pol_L	PF01193	1.2e-24	2
MGP_PWKPhJ_P0047235	RNA_pol_A_bac	PF01000	3.1e-20	1
MGP_PWKPhJ_P0047231	RNA_pol_A_bac	PF01000	9.3e-12	1
MGP_PWKPhJ_P0047231	RNA_pol_L	PF01193	4.8e-25	2
MGP_PWKPhJ_P0047236	RNA_pol_L	PF01193	8.7e-11	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
Polr1c-001	MGP_PWKPhJ_T0047230	1320	346aa	MGP_PWKPhJ_P0047230"/note="transcript_id=MGP_PWKPhJ_T0047230
-	MGP_PWKPhJ_T0047231	953	245aa	MGP_PWKPhJ_P0047231"/note="transcript_id=MGP_PWKPhJ_T0047231
-	MGP_PWKPhJ_T0047232	829	260aa	MGP_PWKPhJ_P0047232"/note="transcript_id=MGP_PWKPhJ_T0047232
-	MGP_PWKPhJ_T0047233	870	No protein	-
-	MGP_PWKPhJ_T0047234	771	255aa	MGP_PWKPhJ_P0047234"/note="transcript_id=MGP_PWKPhJ_T0047234
-	MGP_PWKPhJ_T0047235	516	170aa	MGP_PWKPhJ_P0047235"/note="transcript_id=MGP_PWKPhJ_T0047235
-	MGP_PWKPhJ_T0047236	432	103aa	MGP_PWKPhJ_P0047236"/note="transcript_id=MGP_PWKPhJ_T0047236
-	MGP_PWKPhJ_T0047237	728	No protein	-
-	MGP_PWKPhJ_T0047238	584	No protein	-

Gene Model

Click here to download MGP_PWKPhJ_G0022759's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download MGP_PWKPhJ_G0022759's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_PWKPhJ_G0022759	mus_musculus_pwkphj	MGP_PWKPhJ_P0048107	36.1538	20.7692	mus_musculus_pwkphj	MGP_PWKPhJ_P0047230	13.5838	7.80347
MGP_PWKPhJ_G0022759	mus_musculus_pwkphj	MGP_PWKPhJ_P0089635	39.9425	25.5747	mus_musculus_pwkphj	MGP_PWKPhJ_P0047230	40.1734	25.7225

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_PWKPhJ_G0022759	mus_musculus_pwkphj	MGP_PWKPhJ_P0047230	100	100	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0047911	100	100
MGP_PWKPhJ_G0022759	mus_musculus_pwkphj	MGP_PWKPhJ_P0047230	100	100	mus_musculus_aj	MGP_AJ_P0047894	100	100
MGP_PWKPhJ_G0022759	mus_musculus_pwkphj	MGP_PWKPhJ_P0047230	100	100	mus_musculus_c3hhej	MGP_C3HHeJ_P0047591	100	100
MGP_PWKPhJ_G0022759	mus_musculus_pwkphj	MGP_PWKPhJ_P0047230	100	100	mus_musculus_cbaj	MGP_CBAJ_P0047523	100	100
MGP_PWKPhJ_G0022759	mus_musculus_pwkphj	MGP_PWKPhJ_P0047230	100	100	mus_musculus_balbcj	MGP_BALBcJ_P0047856	100	100
MGP_PWKPhJ_G0022759	mus_musculus_pwkphj	MGP_PWKPhJ_P0047230	100	100	mus_musculus_fvbnj	MGP_FVBNJ_P0047587	100	100
MGP_PWKPhJ_G0022759	mus_musculus_pwkphj	MGP_PWKPhJ_P0047230	100	100	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0048345	100	100
MGP_PWKPhJ_G0022759	mus_musculus_pwkphj	MGP_PWKPhJ_P0047230	100	100	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0047600	100	100
MGP_PWKPhJ_G0022759	mus_musculus_pwkphj	MGP_PWKPhJ_P0047230	100	100	mus_musculus_nzohlltj	MGP_NZOHlLtJ_P0048444	100	100
MGP_PWKPhJ_G0022759	mus_musculus_pwkphj	MGP_PWKPhJ_P0047230	100	100	mus_musculus_dba2j	MGP_DBA2J_P0047624	100	100
MGP_PWKPhJ_G0022759	mus_musculus_pwkphj	MGP_PWKPhJ_P0047230	100	100	mus_musculus_casteij	MGP_CASTEiJ_P0047649	100	100
MGP_PWKPhJ_G0022759	mus_musculus_pwkphj	MGP_PWKPhJ_P0047230	100	100	mus_musculus_akrj	MGP_AKRJ_P0047856	100	100
MGP_PWKPhJ_G0022759	mus_musculus_pwkphj	MGP_PWKPhJ_P0047230	100	100	mus_spicilegus	ENSMSIP00000014380	100	100
MGP_PWKPhJ_G0022759	mus_musculus_pwkphj	MGP_PWKPhJ_P0047230	100	100	mus_musculus_lpj	MGP_LPJ_P0047729	100	100
MGP_PWKPhJ_G0022759	mus_musculus_pwkphj	MGP_PWKPhJ_P0047230	100	100	mus_musculus_wsbeij	MGP_WSBEiJ_P0046904	100	100
MGP_PWKPhJ_G0022759	mus_musculus_pwkphj	MGP_PWKPhJ_P0047230	100	100	mus_musculus	ENSMUSP00000084252	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression