RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	MGP_PWKPhJ_G0020005	Gene ID		Accession	-
Symbol	Rpl21-ps4	Alias	-	Full Name	ribosomal protein L21, pseudogene 4
Status	Confidence	Length	440 bases	Strand	Plus strand
Position	14 : 3504087 - 3504526	RNA binding domain	Ribosomal_L21e
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
MGP_PWKPhJ_P0037632	Ribosomal_L21e	PF01157	4.9e-48	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
Rpl21-ps4-201	MGP_PWKPhJ_T0037632	440	145aa	MGP_PWKPhJ_P0037632"/note="transcript_id=MGP_PWKPhJ_T0037632

Gene Model

Click here to download MGP_PWKPhJ_G0020005's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download MGP_PWKPhJ_G0020005's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_PWKPhJ_G0020005	mus_musculus_pwkphj	MGP_PWKPhJ_P0075535	53.9535	51.1628	mus_musculus_pwkphj	MGP_PWKPhJ_P0037632	80	75.8621

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_PWKPhJ_G0020005	mus_musculus_pwkphj	MGP_PWKPhJ_P0037632	78.6207	74.4828	mus_caroli	MGP_CAROLIEiJ_P0035611	79.1667	75
MGP_PWKPhJ_G0020005	mus_musculus_pwkphj	MGP_PWKPhJ_P0037632	100	100	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0038310	100	100
MGP_PWKPhJ_G0020005	mus_musculus_pwkphj	MGP_PWKPhJ_P0037632	41.3793	40.6897	mus_musculus_aj	MGP_AJ_P0038257	52.6316	51.7544
MGP_PWKPhJ_G0020005	mus_musculus_pwkphj	MGP_PWKPhJ_P0037632	100	100	mus_musculus_c3hhej	MGP_C3HHeJ_P0038011	100	100
MGP_PWKPhJ_G0020005	mus_musculus_pwkphj	MGP_PWKPhJ_P0037632	100	100	mus_musculus_cbaj	MGP_CBAJ_P0037928	100	100
MGP_PWKPhJ_G0020005	mus_musculus_pwkphj	MGP_PWKPhJ_P0037632	77.931	73.7931	mus_musculus_balbcj	MGP_BALBcJ_P0038267	77.3973	73.2877
MGP_PWKPhJ_G0020005	mus_musculus_pwkphj	MGP_PWKPhJ_P0037632	77.931	73.1034	mus_musculus_fvbnj	MGP_FVBNJ_P0038038	77.3973	72.6027
MGP_PWKPhJ_G0020005	mus_musculus_pwkphj	MGP_PWKPhJ_P0037632	77.2414	73.1034	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0038725	73.6842	69.7368
MGP_PWKPhJ_G0020005	mus_musculus_pwkphj	MGP_PWKPhJ_P0037632	77.931	73.1034	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0038022	77.3973	72.6027
MGP_PWKPhJ_G0020005	mus_musculus_pwkphj	MGP_PWKPhJ_P0037632	80	75.8621	mus_pahari	MGP_PahariEiJ_P0060409	72.5	68.75
MGP_PWKPhJ_G0020005	mus_musculus_pwkphj	MGP_PWKPhJ_P0037632	77.931	73.1034	mus_musculus_nzohlltj	MGP_NZOHlLtJ_P0038769	77.3973	72.6027
MGP_PWKPhJ_G0020005	mus_musculus_pwkphj	MGP_PWKPhJ_P0037632	100	100	mus_musculus_dba2j	MGP_DBA2J_P0038072	100	100
MGP_PWKPhJ_G0020005	mus_musculus_pwkphj	MGP_PWKPhJ_P0037632	78.6207	73.7931	mus_musculus_casteij	MGP_CASTEiJ_P0038004	78.0822	73.2877
MGP_PWKPhJ_G0020005	mus_musculus_pwkphj	MGP_PWKPhJ_P0037632	52.4138	45.5172	mus_musculus_akrj	MGP_AKRJ_P0038221	73.7864	64.0777
MGP_PWKPhJ_G0020005	mus_musculus_pwkphj	MGP_PWKPhJ_P0037632	75.8621	69.6552	rattus_norvegicus	ENSRNOP00000039287	70.9677	65.1613
MGP_PWKPhJ_G0020005	mus_musculus_pwkphj	MGP_PWKPhJ_P0037632	57.2414	52.4138	rattus_norvegicus	ENSRNOP00000093169	69.7479	63.8655
MGP_PWKPhJ_G0020005	mus_musculus_pwkphj	MGP_PWKPhJ_P0037632	57.931	48.9655	rattus_norvegicus	ENSRNOP00000072124	65.1163	55.0388
MGP_PWKPhJ_G0020005	mus_musculus_pwkphj	MGP_PWKPhJ_P0037632	77.931	73.7931	rattus_norvegicus	ENSRNOP00000042560	70.625	66.875
MGP_PWKPhJ_G0020005	mus_musculus_pwkphj	MGP_PWKPhJ_P0037632	77.931	71.7241	rattus_norvegicus	ENSRNOP00000064745	70.625	65
MGP_PWKPhJ_G0020005	mus_musculus_pwkphj	MGP_PWKPhJ_P0037632	80	75.1724	rattus_norvegicus	ENSRNOP00000051332	72.5	68.125
MGP_PWKPhJ_G0020005	mus_musculus_pwkphj	MGP_PWKPhJ_P0037632	71.0345	64.1379	rattus_norvegicus	ENSRNOP00000021161	63.9752	57.764
MGP_PWKPhJ_G0020005	mus_musculus_pwkphj	MGP_PWKPhJ_P0037632	80	75.8621	rattus_norvegicus	ENSRNOP00000083763	72.5	68.75
MGP_PWKPhJ_G0020005	mus_musculus_pwkphj	MGP_PWKPhJ_P0037632	67.5862	56.5517	rattus_norvegicus	ENSRNOP00000046070	62.4204	52.2293
MGP_PWKPhJ_G0020005	mus_musculus_pwkphj	MGP_PWKPhJ_P0037632	79.3103	72.4138	rattus_norvegicus	ENSRNOP00000042567	71.875	65.625
MGP_PWKPhJ_G0020005	mus_musculus_pwkphj	MGP_PWKPhJ_P0037632	74.4828	68.9655	rattus_norvegicus	ENSRNOP00000046578	67.5	62.5
MGP_PWKPhJ_G0020005	mus_musculus_pwkphj	MGP_PWKPhJ_P0037632	59.3103	53.7931	rattus_norvegicus	ENSRNOP00000077066	68.254	61.9048
MGP_PWKPhJ_G0020005	mus_musculus_pwkphj	MGP_PWKPhJ_P0037632	51.7241	50.3448	rattus_norvegicus	ENSRNOP00000082791	88.2353	85.8824
MGP_PWKPhJ_G0020005	mus_musculus_pwkphj	MGP_PWKPhJ_P0037632	78.6207	73.7931	rattus_norvegicus	ENSRNOP00000055393	71.25	66.875
MGP_PWKPhJ_G0020005	mus_musculus_pwkphj	MGP_PWKPhJ_P0037632	77.2414	73.1034	rattus_norvegicus	ENSRNOP00000046669	70	66.25
MGP_PWKPhJ_G0020005	mus_musculus_pwkphj	MGP_PWKPhJ_P0037632	77.931	73.1034	rattus_norvegicus	ENSRNOP00000047511	70.625	66.25
MGP_PWKPhJ_G0020005	mus_musculus_pwkphj	MGP_PWKPhJ_P0037632	80	75.8621	rattus_norvegicus	ENSRNOP00000051312	72.5	68.75
MGP_PWKPhJ_G0020005	mus_musculus_pwkphj	MGP_PWKPhJ_P0037632	71.7241	66.2069	rattus_norvegicus	ENSRNOP00000039179	67.5325	62.3377
MGP_PWKPhJ_G0020005	mus_musculus_pwkphj	MGP_PWKPhJ_P0037632	77.931	71.7241	rattus_norvegicus	ENSRNOP00000049709	70.625	65
MGP_PWKPhJ_G0020005	mus_musculus_pwkphj	MGP_PWKPhJ_P0037632	80	75.8621	rattus_norvegicus	ENSRNOP00000048808	72.5	68.75
MGP_PWKPhJ_G0020005	mus_musculus_pwkphj	MGP_PWKPhJ_P0037632	76.5517	70.3448	rattus_norvegicus	ENSRNOP00000088797	69.375	63.75
MGP_PWKPhJ_G0020005	mus_musculus_pwkphj	MGP_PWKPhJ_P0037632	74.4828	69.6552	rattus_norvegicus	ENSRNOP00000066592	67.0807	62.7329
MGP_PWKPhJ_G0020005	mus_musculus_pwkphj	MGP_PWKPhJ_P0037632	79.3103	75.1724	rattus_norvegicus	ENSRNOP00000046409	71.875	68.125
MGP_PWKPhJ_G0020005	mus_musculus_pwkphj	MGP_PWKPhJ_P0037632	78.6207	73.1034	rattus_norvegicus	ENSRNOP00000041263	71.25	66.25
MGP_PWKPhJ_G0020005	mus_musculus_pwkphj	MGP_PWKPhJ_P0037632	77.2414	69.6552	rattus_norvegicus	ENSRNOP00000053160	70	63.125
MGP_PWKPhJ_G0020005	mus_musculus_pwkphj	MGP_PWKPhJ_P0037632	77.931	73.1034	rattus_norvegicus	ENSRNOP00000083301	79.5775	74.6479
MGP_PWKPhJ_G0020005	mus_musculus_pwkphj	MGP_PWKPhJ_P0037632	77.931	73.7931	rattus_norvegicus	ENSRNOP00000041191	70.625	66.875
MGP_PWKPhJ_G0020005	mus_musculus_pwkphj	MGP_PWKPhJ_P0037632	64.1379	54.4828	rattus_norvegicus	ENSRNOP00000055671	60	50.9677
MGP_PWKPhJ_G0020005	mus_musculus_pwkphj	MGP_PWKPhJ_P0037632	79.3103	74.4828	rattus_norvegicus	ENSRNOP00000039786	71.875	67.5
MGP_PWKPhJ_G0020005	mus_musculus_pwkphj	MGP_PWKPhJ_P0037632	77.2414	73.1034	rattus_norvegicus	ENSRNOP00000042277	70	66.25
MGP_PWKPhJ_G0020005	mus_musculus_pwkphj	MGP_PWKPhJ_P0037632	78.6207	73.1034	rattus_norvegicus	ENSRNOP00000041199	71.25	66.25
MGP_PWKPhJ_G0020005	mus_musculus_pwkphj	MGP_PWKPhJ_P0037632	80	75.8621	mus_musculus_lpj	MGP_LPJ_P0075692	72.5	68.75
MGP_PWKPhJ_G0020005	mus_musculus_pwkphj	MGP_PWKPhJ_P0037632	64.8276	55.1724	mus_spretus	MGP_SPRETEiJ_P0075021	60.2564	51.2821
MGP_PWKPhJ_G0020005	mus_musculus_pwkphj	MGP_PWKPhJ_P0037632	75.1724	73.1034	mus_musculus_wsbeij	MGP_WSBEiJ_P0037420	74.6575	72.6027
MGP_PWKPhJ_G0020005	mus_musculus_pwkphj	MGP_PWKPhJ_P0037632	80	75.8621	mus_musculus	ENSMUSP00000041652	72.5	68.75

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression