Description

Ensembl ID MGP_PWKPhJ_G0015562 Gene ID Accession -
Symbol R3hdm1 Alias - Full Name R3H domain containing 1
Status Confidence Length 133672 bases Strand Plus strand
Position 1 : 124443376 - 124577047 RNA binding domain R3H , SUZ
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_PWKPhJ_P0020884 R3H PF01424 5.7e-12 1
MGP_PWKPhJ_P0020891 R3H PF01424 7.2e-12 1
MGP_PWKPhJ_P0020891 SUZ PF12752 1.4e-11 2
MGP_PWKPhJ_P0020889 R3H PF01424 1.8e-11 1
MGP_PWKPhJ_P0020889 SUZ PF12752 1.9e-11 2
MGP_PWKPhJ_P0020886 R3H PF01424 2e-11 1
MGP_PWKPhJ_P0020886 SUZ PF12752 2.2e-11 2
MGP_PWKPhJ_P0020885 R3H PF01424 4.9e-11 1
MGP_PWKPhJ_P0020885 SUZ PF12752 5.4e-11 2
MGP_PWKPhJ_P0020888 R3H PF01424 4.9e-11 1
MGP_PWKPhJ_P0020888 SUZ PF12752 5.4e-11 2

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
R3hdm1-002 MGP_PWKPhJ_T0020883 2438 No protein -
- MGP_PWKPhJ_T0020884 1130 239aa MGP_PWKPhJ_P0020884"/note="transcript_id=MGP_PWKPhJ_T0020884
- MGP_PWKPhJ_T0020885 4796 1135aa MGP_PWKPhJ_P0020885"/note="transcript_id=MGP_PWKPhJ_T0020885
- MGP_PWKPhJ_T0020886 3987 549aa MGP_PWKPhJ_P0020886"/note="transcript_id=MGP_PWKPhJ_T0020886
- MGP_PWKPhJ_T0020887 8250 No protein -
- MGP_PWKPhJ_T0020888 4822 1135aa MGP_PWKPhJ_P0020888"/note="transcript_id=MGP_PWKPhJ_T0020888
- MGP_PWKPhJ_T0020889 1661 486aa MGP_PWKPhJ_P0020889"/note="transcript_id=MGP_PWKPhJ_T0020889
- MGP_PWKPhJ_T0020890 453 32aa MGP_PWKPhJ_P0020890"/note="transcript_id=MGP_PWKPhJ_T0020890
- MGP_PWKPhJ_T0020891 1040 287aa MGP_PWKPhJ_P0020891"/note="transcript_id=MGP_PWKPhJ_T0020891
- MGP_PWKPhJ_T0020892 6501 No protein -
- MGP_PWKPhJ_T0020893 597 No protein -
- MGP_PWKPhJ_T0020894 4987 No protein -
- MGP_PWKPhJ_T0020895 549 182aa MGP_PWKPhJ_P0020895"/note="transcript_id=MGP_PWKPhJ_T0020895
- MGP_PWKPhJ_T0020896 1155 385aa MGP_PWKPhJ_P0020896"/note="transcript_id=MGP_PWKPhJ_T0020896
- MGP_PWKPhJ_T0020897 3554 No protein -
- MGP_PWKPhJ_T0020898 6248 No protein -
- MGP_PWKPhJ_T0020899 1589 No protein -

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_PWKPhJ_G0015562mus_musculus_pwkphjMGP_PWKPhJ_P002641369.606953.0201mus_musculus_pwkphjMGP_PWKPhJ_P002088563.964848.7225
MGP_PWKPhJ_G0015562mus_musculus_pwkphjMGP_PWKPhJ_P009464564.725547.5874mus_musculus_pwkphjMGP_PWKPhJ_P002088534.273125.1982

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_PWKPhJ_G0015562mus_musculus_pwkphjMGP_PWKPhJ_P002088599.647698.9427mus_caroliMGP_CAROLIEiJ_P001962299.647698.9427
MGP_PWKPhJ_G0015562mus_musculus_pwkphjMGP_PWKPhJ_P002088599.735799.7357mus_musculus_129s1svimjMGP_129S1SvImJ_P002187599.124399.1243
MGP_PWKPhJ_G0015562mus_musculus_pwkphjMGP_PWKPhJ_P002088599.823899.8238mus_musculus_ajMGP_AJ_P002184699.823899.8238
MGP_PWKPhJ_G0015562mus_musculus_pwkphjMGP_PWKPhJ_P002088599.823899.8238mus_musculus_c3hhejMGP_C3HHeJ_P002161799.823899.8238
MGP_PWKPhJ_G0015562mus_musculus_pwkphjMGP_PWKPhJ_P002088599.823899.8238mus_musculus_cbajMGP_CBAJ_P002156699.823899.8238
MGP_PWKPhJ_G0015562mus_musculus_pwkphjMGP_PWKPhJ_P002088599.823899.8238mus_musculus_balbcjMGP_BALBcJ_P002181099.823899.8238
MGP_PWKPhJ_G0015562mus_musculus_pwkphjMGP_PWKPhJ_P002088599.823899.8238mus_musculus_fvbnjMGP_FVBNJ_P002170499.823899.8238
MGP_PWKPhJ_G0015562mus_musculus_pwkphjMGP_PWKPhJ_P002088599.823899.8238mus_musculus_c57bl6njMGP_C57BL6NJ_P002232699.823899.8238
MGP_PWKPhJ_G0015562mus_musculus_pwkphjMGP_PWKPhJ_P002088599.823899.8238mus_musculus_nodshiltjMGP_NODShiLtJ_P002167699.823899.8238
MGP_PWKPhJ_G0015562mus_musculus_pwkphjMGP_PWKPhJ_P002088599.295298.6784mus_pahariMGP_PahariEiJ_P007492199.382798.7654
MGP_PWKPhJ_G0015562mus_musculus_pwkphjMGP_PWKPhJ_P002088599.823899.8238mus_musculus_nzohlltjMGP_NZOHlLtJ_P002236199.823899.8238
MGP_PWKPhJ_G0015562mus_musculus_pwkphjMGP_PWKPhJ_P002088599.823899.8238mus_musculus_dba2jMGP_DBA2J_P002169299.823899.8238
MGP_PWKPhJ_G0015562mus_musculus_pwkphjMGP_PWKPhJ_P002088599.647699.6476mus_musculus_casteijMGP_CASTEiJ_P002114699.647699.6476
MGP_PWKPhJ_G0015562mus_musculus_pwkphjMGP_PWKPhJ_P002088599.823899.8238mus_musculus_akrjMGP_AKRJ_P002181799.823899.8238
MGP_PWKPhJ_G0015562mus_musculus_pwkphjMGP_PWKPhJ_P002088599.20799.1189mus_spicilegusENSMSIP0000003080796.818696.7326
MGP_PWKPhJ_G0015562mus_musculus_pwkphjMGP_PWKPhJ_P002088598.502297.3568rattus_norvegicusENSRNOP0000000537298.676197.5287
MGP_PWKPhJ_G0015562mus_musculus_pwkphjMGP_PWKPhJ_P002088599.823899.8238mus_musculus_lpjMGP_LPJ_P002179299.823899.8238
MGP_PWKPhJ_G0015562mus_musculus_pwkphjMGP_PWKPhJ_P002088599.823899.8238mus_spretusMGP_SPRETEiJ_P002065599.823899.8238
MGP_PWKPhJ_G0015562mus_musculus_pwkphjMGP_PWKPhJ_P002088599.823899.8238mus_musculus_wsbeijMGP_WSBEiJ_P002120499.823899.8238
MGP_PWKPhJ_G0015562mus_musculus_pwkphjMGP_PWKPhJ_P002088599.823899.8238mus_musculusENSMUSP0000004310399.823899.8238

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression