RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | MGP_PWKPhJ_G0015562 | Gene ID |
|
Accession |
- |
Symbol |
R3hdm1 |
Alias |
- |
Full Name |
R3H domain containing 1 |
Status |
Confidence |
Length |
133672 bases |
Strand |
Plus strand |
Position |
1 : 124443376 - 124577047 |
RNA binding domain |
R3H , SUZ |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
MGP_PWKPhJ_P0020884 |
R3H |
PF01424 |
5.7e-12 |
1 |
MGP_PWKPhJ_P0020891 |
R3H |
PF01424 |
7.2e-12 |
1 |
MGP_PWKPhJ_P0020891 |
SUZ |
PF12752 |
1.4e-11 |
2 |
MGP_PWKPhJ_P0020889 |
R3H |
PF01424 |
1.8e-11 |
1 |
MGP_PWKPhJ_P0020889 |
SUZ |
PF12752 |
1.9e-11 |
2 |
MGP_PWKPhJ_P0020886 |
R3H |
PF01424 |
2e-11 |
1 |
MGP_PWKPhJ_P0020886 |
SUZ |
PF12752 |
2.2e-11 |
2 |
MGP_PWKPhJ_P0020885 |
R3H |
PF01424 |
4.9e-11 |
1 |
MGP_PWKPhJ_P0020885 |
SUZ |
PF12752 |
5.4e-11 |
2 |
MGP_PWKPhJ_P0020888 |
R3H |
PF01424 |
4.9e-11 |
1 |
MGP_PWKPhJ_P0020888 |
SUZ |
PF12752 |
5.4e-11 |
2 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
R3hdm1-002 |
MGP_PWKPhJ_T0020883 |
2438 |
No protein |
- |
- |
MGP_PWKPhJ_T0020884 |
1130 |
239aa |
MGP_PWKPhJ_P0020884"/note="transcript_id=MGP_PWKPhJ_T0020884 |
- |
MGP_PWKPhJ_T0020885 |
4796 |
1135aa |
MGP_PWKPhJ_P0020885"/note="transcript_id=MGP_PWKPhJ_T0020885 |
- |
MGP_PWKPhJ_T0020886 |
3987 |
549aa |
MGP_PWKPhJ_P0020886"/note="transcript_id=MGP_PWKPhJ_T0020886 |
- |
MGP_PWKPhJ_T0020887 |
8250 |
No protein |
- |
- |
MGP_PWKPhJ_T0020888 |
4822 |
1135aa |
MGP_PWKPhJ_P0020888"/note="transcript_id=MGP_PWKPhJ_T0020888 |
- |
MGP_PWKPhJ_T0020889 |
1661 |
486aa |
MGP_PWKPhJ_P0020889"/note="transcript_id=MGP_PWKPhJ_T0020889 |
- |
MGP_PWKPhJ_T0020890 |
453 |
32aa |
MGP_PWKPhJ_P0020890"/note="transcript_id=MGP_PWKPhJ_T0020890 |
- |
MGP_PWKPhJ_T0020891 |
1040 |
287aa |
MGP_PWKPhJ_P0020891"/note="transcript_id=MGP_PWKPhJ_T0020891 |
- |
MGP_PWKPhJ_T0020892 |
6501 |
No protein |
- |
- |
MGP_PWKPhJ_T0020893 |
597 |
No protein |
- |
- |
MGP_PWKPhJ_T0020894 |
4987 |
No protein |
- |
- |
MGP_PWKPhJ_T0020895 |
549 |
182aa |
MGP_PWKPhJ_P0020895"/note="transcript_id=MGP_PWKPhJ_T0020895 |
- |
MGP_PWKPhJ_T0020896 |
1155 |
385aa |
MGP_PWKPhJ_P0020896"/note="transcript_id=MGP_PWKPhJ_T0020896 |
- |
MGP_PWKPhJ_T0020897 |
3554 |
No protein |
- |
- |
MGP_PWKPhJ_T0020898 |
6248 |
No protein |
- |
- |
MGP_PWKPhJ_T0020899 |
1589 |
No protein |
- |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_PWKPhJ_G0015562 | mus_musculus_pwkphj | MGP_PWKPhJ_P0026413 | 69.6069 | 53.0201 | mus_musculus_pwkphj | MGP_PWKPhJ_P0020885 | 63.9648 | 48.7225 |
MGP_PWKPhJ_G0015562 | mus_musculus_pwkphj | MGP_PWKPhJ_P0094645 | 64.7255 | 47.5874 | mus_musculus_pwkphj | MGP_PWKPhJ_P0020885 | 34.2731 | 25.1982 |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_PWKPhJ_G0015562 | mus_musculus_pwkphj | MGP_PWKPhJ_P0020885 | 99.6476 | 98.9427 | mus_caroli | MGP_CAROLIEiJ_P0019622 | 99.6476 | 98.9427 |
MGP_PWKPhJ_G0015562 | mus_musculus_pwkphj | MGP_PWKPhJ_P0020885 | 99.7357 | 99.7357 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0021875 | 99.1243 | 99.1243 |
MGP_PWKPhJ_G0015562 | mus_musculus_pwkphj | MGP_PWKPhJ_P0020885 | 99.8238 | 99.8238 | mus_musculus_aj | MGP_AJ_P0021846 | 99.8238 | 99.8238 |
MGP_PWKPhJ_G0015562 | mus_musculus_pwkphj | MGP_PWKPhJ_P0020885 | 99.8238 | 99.8238 | mus_musculus_c3hhej | MGP_C3HHeJ_P0021617 | 99.8238 | 99.8238 |
MGP_PWKPhJ_G0015562 | mus_musculus_pwkphj | MGP_PWKPhJ_P0020885 | 99.8238 | 99.8238 | mus_musculus_cbaj | MGP_CBAJ_P0021566 | 99.8238 | 99.8238 |
MGP_PWKPhJ_G0015562 | mus_musculus_pwkphj | MGP_PWKPhJ_P0020885 | 99.8238 | 99.8238 | mus_musculus_balbcj | MGP_BALBcJ_P0021810 | 99.8238 | 99.8238 |
MGP_PWKPhJ_G0015562 | mus_musculus_pwkphj | MGP_PWKPhJ_P0020885 | 99.8238 | 99.8238 | mus_musculus_fvbnj | MGP_FVBNJ_P0021704 | 99.8238 | 99.8238 |
MGP_PWKPhJ_G0015562 | mus_musculus_pwkphj | MGP_PWKPhJ_P0020885 | 99.8238 | 99.8238 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0022326 | 99.8238 | 99.8238 |
MGP_PWKPhJ_G0015562 | mus_musculus_pwkphj | MGP_PWKPhJ_P0020885 | 99.8238 | 99.8238 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0021676 | 99.8238 | 99.8238 |
MGP_PWKPhJ_G0015562 | mus_musculus_pwkphj | MGP_PWKPhJ_P0020885 | 99.2952 | 98.6784 | mus_pahari | MGP_PahariEiJ_P0074921 | 99.3827 | 98.7654 |
MGP_PWKPhJ_G0015562 | mus_musculus_pwkphj | MGP_PWKPhJ_P0020885 | 99.8238 | 99.8238 | mus_musculus_nzohlltj | MGP_NZOHlLtJ_P0022361 | 99.8238 | 99.8238 |
MGP_PWKPhJ_G0015562 | mus_musculus_pwkphj | MGP_PWKPhJ_P0020885 | 99.8238 | 99.8238 | mus_musculus_dba2j | MGP_DBA2J_P0021692 | 99.8238 | 99.8238 |
MGP_PWKPhJ_G0015562 | mus_musculus_pwkphj | MGP_PWKPhJ_P0020885 | 99.6476 | 99.6476 | mus_musculus_casteij | MGP_CASTEiJ_P0021146 | 99.6476 | 99.6476 |
MGP_PWKPhJ_G0015562 | mus_musculus_pwkphj | MGP_PWKPhJ_P0020885 | 99.8238 | 99.8238 | mus_musculus_akrj | MGP_AKRJ_P0021817 | 99.8238 | 99.8238 |
MGP_PWKPhJ_G0015562 | mus_musculus_pwkphj | MGP_PWKPhJ_P0020885 | 99.207 | 99.1189 | mus_spicilegus | ENSMSIP00000030807 | 96.8186 | 96.7326 |
MGP_PWKPhJ_G0015562 | mus_musculus_pwkphj | MGP_PWKPhJ_P0020885 | 98.5022 | 97.3568 | rattus_norvegicus | ENSRNOP00000005372 | 98.6761 | 97.5287 |
MGP_PWKPhJ_G0015562 | mus_musculus_pwkphj | MGP_PWKPhJ_P0020885 | 99.8238 | 99.8238 | mus_musculus_lpj | MGP_LPJ_P0021792 | 99.8238 | 99.8238 |
MGP_PWKPhJ_G0015562 | mus_musculus_pwkphj | MGP_PWKPhJ_P0020885 | 99.8238 | 99.8238 | mus_spretus | MGP_SPRETEiJ_P0020655 | 99.8238 | 99.8238 |
MGP_PWKPhJ_G0015562 | mus_musculus_pwkphj | MGP_PWKPhJ_P0020885 | 99.8238 | 99.8238 | mus_musculus_wsbeij | MGP_WSBEiJ_P0021204 | 99.8238 | 99.8238 |
MGP_PWKPhJ_G0015562 | mus_musculus_pwkphj | MGP_PWKPhJ_P0020885 | 99.8238 | 99.8238 | mus_musculus | ENSMUSP00000043103 | 99.8238 | 99.8238 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |