RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	MGP_PWKPhJ_G0015035	Gene ID		Accession	-
Symbol	Khdrbs2	Alias	-	Full Name	KH domain containing, RNA binding, signal transduction associated 2
Status	Confidence	Length	493500 bases	Strand	Plus strand
Position	1 : 28839562 - 29333061	RNA binding domain	KH_1 , Qua1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
MGP_PWKPhJ_P0018200	KH_1	PF00013	7.2e-09	1
MGP_PWKPhJ_P0018200	Qua1	PF16274	8.3e-28	2
MGP_PWKPhJ_P0018202	KH_1	PF00013	1e-07	1
MGP_PWKPhJ_P0018202	Qua1	PF16274	2.2e-28	2
MGP_PWKPhJ_P0018201	Qua1	PF16274	4.2e-29	1
MGP_PWKPhJ_P0018203	Qua1	PF16274	4.6e-29	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
Khdrbs2-001	MGP_PWKPhJ_T0018200	2224	327aa	MGP_PWKPhJ_P0018200"/note="transcript_id=MGP_PWKPhJ_T0018200
-	MGP_PWKPhJ_T0018201	3260	91aa	MGP_PWKPhJ_P0018201"/note="transcript_id=MGP_PWKPhJ_T0018201
-	MGP_PWKPhJ_T0018202	5128	193aa	MGP_PWKPhJ_P0018202"/note="transcript_id=MGP_PWKPhJ_T0018202
-	MGP_PWKPhJ_T0018203	543	92aa	MGP_PWKPhJ_P0018203"/note="transcript_id=MGP_PWKPhJ_T0018203

Gene Model

Click here to download MGP_PWKPhJ_G0015035's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download MGP_PWKPhJ_G0015035's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_PWKPhJ_G0015035	mus_musculus_pwkphj	MGP_PWKPhJ_P0040484	68.2081	59.8266	mus_musculus_pwkphj	MGP_PWKPhJ_P0018200	72.1713	63.3028
MGP_PWKPhJ_G0015035	mus_musculus_pwkphj	MGP_PWKPhJ_P0044914	42.7692	30.7692	mus_musculus_pwkphj	MGP_PWKPhJ_P0018200	42.5076	30.581
MGP_PWKPhJ_G0015035	mus_musculus_pwkphj	MGP_PWKPhJ_P0050184	19.2488	12.5196	mus_musculus_pwkphj	MGP_PWKPhJ_P0018200	37.6147	24.4648
MGP_PWKPhJ_G0015035	mus_musculus_pwkphj	MGP_PWKPhJ_P0067676	51.9187	43.5666	mus_musculus_pwkphj	MGP_PWKPhJ_P0018200	70.3364	59.0214

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_PWKPhJ_G0015035	mus_musculus_pwkphj	MGP_PWKPhJ_P0018200	95.107	92.9664	mus_caroli	MGP_CAROLIEiJ_P0016975	89.1117	87.106
MGP_PWKPhJ_G0015035	mus_musculus_pwkphj	MGP_PWKPhJ_P0018200	95.107	93.578	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0019184	89.1117	87.6791
MGP_PWKPhJ_G0015035	mus_musculus_pwkphj	MGP_PWKPhJ_P0018200	95.107	93.578	mus_musculus_aj	MGP_AJ_P0019160	89.1117	87.6791
MGP_PWKPhJ_G0015035	mus_musculus_pwkphj	MGP_PWKPhJ_P0018200	95.107	93.578	mus_musculus_c3hhej	MGP_C3HHeJ_P0018940	89.1117	87.6791
MGP_PWKPhJ_G0015035	mus_musculus_pwkphj	MGP_PWKPhJ_P0018200	95.107	93.578	mus_musculus_cbaj	MGP_CBAJ_P0018894	89.1117	87.6791
MGP_PWKPhJ_G0015035	mus_musculus_pwkphj	MGP_PWKPhJ_P0018200	95.107	93.578	mus_musculus_balbcj	MGP_BALBcJ_P0019109	89.1117	87.6791
MGP_PWKPhJ_G0015035	mus_musculus_pwkphj	MGP_PWKPhJ_P0018200	95.107	93.578	mus_musculus_fvbnj	MGP_FVBNJ_P0019017	89.1117	87.6791
MGP_PWKPhJ_G0015035	mus_musculus_pwkphj	MGP_PWKPhJ_P0018200	95.107	93.578	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0019610	89.1117	87.6791
MGP_PWKPhJ_G0015035	mus_musculus_pwkphj	MGP_PWKPhJ_P0018200	95.107	93.578	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0018983	89.1117	87.6791
MGP_PWKPhJ_G0015035	mus_musculus_pwkphj	MGP_PWKPhJ_P0018200	95.107	93.2722	mus_pahari	MGP_PahariEiJ_P0072333	89.1117	87.3925
MGP_PWKPhJ_G0015035	mus_musculus_pwkphj	MGP_PWKPhJ_P0018200	95.107	93.578	mus_musculus_nzohlltj	MGP_NZOHlLtJ_P0019662	89.1117	87.6791
MGP_PWKPhJ_G0015035	mus_musculus_pwkphj	MGP_PWKPhJ_P0018200	95.107	93.578	mus_musculus_dba2j	MGP_DBA2J_P0019007	89.1117	87.6791
MGP_PWKPhJ_G0015035	mus_musculus_pwkphj	MGP_PWKPhJ_P0018200	95.107	93.578	mus_musculus_casteij	MGP_CASTEiJ_P0018440	89.1117	87.6791
MGP_PWKPhJ_G0015035	mus_musculus_pwkphj	MGP_PWKPhJ_P0018200	95.107	93.578	mus_musculus_akrj	MGP_AKRJ_P0019119	89.1117	87.6791
MGP_PWKPhJ_G0015035	mus_musculus_pwkphj	MGP_PWKPhJ_P0018200	95.107	93.2722	mus_spicilegus	ENSMSIP00000002572	89.1117	87.3925
MGP_PWKPhJ_G0015035	mus_musculus_pwkphj	MGP_PWKPhJ_P0018200	94.8012	92.3547	rattus_norvegicus	ENSRNOP00000016579	88.8252	86.533
MGP_PWKPhJ_G0015035	mus_musculus_pwkphj	MGP_PWKPhJ_P0018200	95.107	93.578	mus_musculus_lpj	MGP_LPJ_P0019096	89.1117	87.6791
MGP_PWKPhJ_G0015035	mus_musculus_pwkphj	MGP_PWKPhJ_P0018200	95.107	93.578	mus_spretus	MGP_SPRETEiJ_P0017975	89.1117	87.6791
MGP_PWKPhJ_G0015035	mus_musculus_pwkphj	MGP_PWKPhJ_P0018200	95.107	93.578	mus_musculus_wsbeij	MGP_WSBEiJ_P0018534	89.1117	87.6791
MGP_PWKPhJ_G0015035	mus_musculus_pwkphj	MGP_PWKPhJ_P0018200	95.107	93.578	mus_musculus	ENSMUSP00000027226	89.1117	87.6791

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression