RBPWorld - a comprehensive database of RNA Binding Proteins

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Description

Ensembl ID	MGP_NZOHlLtJ_G0032326	Gene ID		Accession	-
Symbol	Rps19	Alias	-	Full Name	ribosomal protein S19
Status	Confidence	Length	5766 bases	Strand	Plus strand
Position	7 : 22952432 - 22958197	RNA binding domain	Ribosomal_S19e
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
MGP_NZOHlLtJ_P0082995	Ribosomal_S19e	PF01090	1.4e-53	1
MGP_NZOHlLtJ_P0083000	Ribosomal_S19e	PF01090	1.4e-53	1
MGP_NZOHlLtJ_P0083002	Ribosomal_S19e	PF01090	6.1e-53	1
MGP_NZOHlLtJ_P0082998	Ribosomal_S19e	PF01090	9.3e-53	1
MGP_NZOHlLtJ_P0082999	Ribosomal_S19e	PF01090	9.7e-51	1
MGP_NZOHlLtJ_P0083001	Ribosomal_S19e	PF01090	1.3e-46	1
MGP_NZOHlLtJ_P0082996	Ribosomal_S19e	PF01090	1.1e-19	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
Rps19-001	MGP_NZOHlLtJ_T0082995	774	145aa	MGP_NZOHlLtJ_P0082995"/note="transcript_id=MGP_NZOHlLtJ_T0082995
-	MGP_NZOHlLtJ_T0082996	593	72aa	MGP_NZOHlLtJ_P0082996"/note="transcript_id=MGP_NZOHlLtJ_T0082996
-	MGP_NZOHlLtJ_T0082997	2657	No protein	-
-	MGP_NZOHlLtJ_T0082998	1289	214aa	MGP_NZOHlLtJ_P0082998"/note="transcript_id=MGP_NZOHlLtJ_T0082998
-	MGP_NZOHlLtJ_T0082999	604	133aa	MGP_NZOHlLtJ_P0082999"/note="transcript_id=MGP_NZOHlLtJ_T0082999
-	MGP_NZOHlLtJ_T0083000	633	145aa	MGP_NZOHlLtJ_P0083000"/note="transcript_id=MGP_NZOHlLtJ_T0083000
-	MGP_NZOHlLtJ_T0083001	417	137aa	MGP_NZOHlLtJ_P0083001"/note="transcript_id=MGP_NZOHlLtJ_T0083001
-	MGP_NZOHlLtJ_T0083002	641	176aa	MGP_NZOHlLtJ_P0083002"/note="transcript_id=MGP_NZOHlLtJ_T0083002
-	MGP_NZOHlLtJ_T0083003	395	No protein	-
-	MGP_NZOHlLtJ_T0083004	286	No protein	-

Gene Model

Click here to download MGP_NZOHlLtJ_G0032326's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download MGP_NZOHlLtJ_G0032326's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_NZOHlLtJ_G0032326

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_NZOHlLtJ_G0032326

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression