Description

Ensembl ID MGP_NZOHlLtJ_G0030831 Gene ID Accession -
Symbol Cpsf4 Alias - Full Name cleavage and polyadenylation specific factor 4
Status Confidence Length 15755 bases Strand Plus strand
Position 5 : 148511869 - 148527623 RNA binding domain zf-CCCH , zf-CCCH_2 , zf-CCHC
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_NZOHlLtJ_P0076564 zf-CCCH PF00642 5.5e-21 1
MGP_NZOHlLtJ_P0076564 zf-CCCH PF00642 5.5e-21 2
MGP_NZOHlLtJ_P0076564 zf-CCCH_2 PF14608 2.5e-06 3
MGP_NZOHlLtJ_P0076564 zf-CCCH_2 PF14608 2.5e-06 4
MGP_NZOHlLtJ_P0076564 zf-CCCH_2 PF14608 2.5e-06 5
MGP_NZOHlLtJ_P0076559 zf-CCCH PF00642 1.5e-20 1
MGP_NZOHlLtJ_P0076559 zf-CCCH PF00642 1.5e-20 2
MGP_NZOHlLtJ_P0076559 zf-CCHC PF00098 5.8e-06 3
MGP_NZOHlLtJ_P0076562 zf-CCCH PF00642 1.6e-20 1
MGP_NZOHlLtJ_P0076562 zf-CCCH PF00642 1.6e-20 2
MGP_NZOHlLtJ_P0076562 zf-CCHC PF00098 5.9e-06 3
MGP_NZOHlLtJ_P0076561 zf-CCCH PF00642 2.9e-20 1
MGP_NZOHlLtJ_P0076561 zf-CCCH PF00642 2.9e-20 2
MGP_NZOHlLtJ_P0076561 zf-CCHC PF00098 6.6e-06 3
MGP_NZOHlLtJ_P0076560 zf-CCCH PF00642 1.7e-15 1
MGP_NZOHlLtJ_P0076560 zf-CCCH PF00642 1.7e-15 2
MGP_NZOHlLtJ_P0076560 zf-CCHC PF00098 4.9e-06 3

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Cpsf4-001 MGP_NZOHlLtJ_T0076559 1728 243aa MGP_NZOHlLtJ_P0076559"/note="transcript_id=MGP_NZOHlLtJ_T0076559
- MGP_NZOHlLtJ_T0076560 1621 211aa MGP_NZOHlLtJ_P0076560"/note="transcript_id=MGP_NZOHlLtJ_T0076560
- MGP_NZOHlLtJ_T0076561 1771 269aa MGP_NZOHlLtJ_P0076561"/note="transcript_id=MGP_NZOHlLtJ_T0076561
- MGP_NZOHlLtJ_T0076562 1402 244aa MGP_NZOHlLtJ_P0076562"/note="transcript_id=MGP_NZOHlLtJ_T0076562
- MGP_NZOHlLtJ_T0076563 1219 62aa MGP_NZOHlLtJ_P0076563"/note="transcript_id=MGP_NZOHlLtJ_T0076563
- MGP_NZOHlLtJ_T0076564 850 207aa MGP_NZOHlLtJ_P0076564"/note="transcript_id=MGP_NZOHlLtJ_T0076564
- MGP_NZOHlLtJ_T0076565 2986 No protein -

Gene Model

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_NZOHlLtJ_G0030831

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_NZOHlLtJ_G0030831

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression