RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	MGP_NODShiLtJ_G0033732	Gene ID		Accession	-
Symbol	Chd9	Alias	-	Full Name	chromodomain helicase DNA binding protein 9
Status	Confidence	Length	241105 bases	Strand	Plus strand
Position	8 : 101101421 - 101342525	RNA binding domain	ResIII , BRK
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
MGP_NODShiLtJ_P0089509	ResIII	PF04851	3.6e-06	1
MGP_NODShiLtJ_P0089509	BRK	PF07533	1.4e-31	2
MGP_NODShiLtJ_P0089509	BRK	PF07533	1.4e-31	3
MGP_NODShiLtJ_P0089508	ResIII	PF04851	3.6e-06	1
MGP_NODShiLtJ_P0089508	BRK	PF07533	1.3e-31	2
MGP_NODShiLtJ_P0089508	BRK	PF07533	1.3e-31	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
Chd9-001	MGP_NODShiLtJ_T0089508	11517	2869aa	MGP_NODShiLtJ_P0089508"/note="transcript_id=MGP_NODShiLtJ_T0089508
-	MGP_NODShiLtJ_T0089509	11494	2885aa	MGP_NODShiLtJ_P0089509"/note="transcript_id=MGP_NODShiLtJ_T0089509

Gene Model

Click here to download MGP_NODShiLtJ_G0033732's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download MGP_NODShiLtJ_G0033732's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_NODShiLtJ_G0033732	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0051086	40.1747	23.456	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0089508	22.4468	13.1056
MGP_NODShiLtJ_G0033732	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0084044	39.6278	23.8095	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0089508	25.2353	15.1621
MGP_NODShiLtJ_G0033732	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0064302	61.42	49.2297	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0089508	63.9247	51.2374
MGP_NODShiLtJ_G0033732	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0079811	38.5135	23.5447	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0089508	25.8278	15.7895
MGP_NODShiLtJ_G0033732	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0062348	53.5556	33.8889	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0089508	16.8003	10.6309
MGP_NODShiLtJ_G0033732	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0066766	40.9639	24.3641	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0089508	10.6657	6.34367
MGP_NODShiLtJ_G0033732	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0096557	35.4032	20.3226	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0089508	15.3015	8.78355
MGP_NODShiLtJ_G0033732	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0051365	38.756	21.0526	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0089508	2.82328	1.53364
MGP_NODShiLtJ_G0033732	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0093730	30.764	17.0532	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0089508	15.7198	8.71384
MGP_NODShiLtJ_G0033732	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0064387	35.553	21.219	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0089508	10.9794	6.55281
MGP_NODShiLtJ_G0033732	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0037133	35.7482	21.3777	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0089508	10.4915	6.27396
MGP_NODShiLtJ_G0033732	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0024360	16.7264	9.25926	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0089508	9.7595	5.40258
MGP_NODShiLtJ_G0033732	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0069216	38.1148	24.0266	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0089508	25.9324	16.3472
MGP_NODShiLtJ_G0033732	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0038610	33.9635	19.6489	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0089508	17.5322	10.1429
MGP_NODShiLtJ_G0033732	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0096618	22.496	11.6317	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0089508	19.4144	10.0383
MGP_NODShiLtJ_G0033732	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0077501	36.8266	23.5064	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0089508	13.1056	8.36528
MGP_NODShiLtJ_G0033732	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0020234	34.6154	19.011	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0089508	10.9794	6.02998
MGP_NODShiLtJ_G0033732	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0091023	39.1574	23.482	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0089508	22.0286	13.2102
MGP_NODShiLtJ_G0033732	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0058687	56.363	43.6001	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0089508	53.259	41.199
MGP_NODShiLtJ_G0033732	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0029720	36.983	23.6983	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0089508	26.4901	16.9746
MGP_NODShiLtJ_G0033732	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0089134	49.1005	32.1693	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0089508	16.1729	10.596
MGP_NODShiLtJ_G0033732	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0095509	49.0948	32.3749	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0089508	16.0683	10.596
MGP_NODShiLtJ_G0033732	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0059867	28.2154	15.5533	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0089508	9.86406	5.43743
MGP_NODShiLtJ_G0033732	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0051306	23.6472	13.3117	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0089508	15.2318	8.57442
MGP_NODShiLtJ_G0033732	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0056579	32.0077	18.5375	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0089508	17.3928	10.0732
MGP_NODShiLtJ_G0033732	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0072953	18.6589	9.47522	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0089508	4.46148	2.2656
MGP_NODShiLtJ_G0033732	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0086426	20.6601	12.4083	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0089508	23.5622	14.1513
MGP_NODShiLtJ_G0033732	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0086430	21.6408	12.9845	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0089508	23.3531	14.0119
MGP_NODShiLtJ_G0033732	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0021668	34.8924	18.3349	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0089508	13.001	6.83165
MGP_NODShiLtJ_G0033732	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0062440	28.7094	15.6277	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0089508	11.3977	6.20425

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_NODShiLtJ_G0033732	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0089508	99.9303	99.8257	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0089915	99.9303	99.8257
MGP_NODShiLtJ_G0033732	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0089508	99.1635	98.4315	mus_caroli	MGP_CAROLIEiJ_P0085486	98.5111	97.7839
MGP_NODShiLtJ_G0033732	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0089508	99.9303	99.8257	mus_musculus_balbcj	MGP_BALBcJ_P0089935	99.3761	99.2721
MGP_NODShiLtJ_G0033732	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0089508	99.756	99.6166	mus_musculus_aj	MGP_AJ_P0090003	99.2028	99.0641
MGP_NODShiLtJ_G0033732	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0089508	99.756	99.6166	mus_musculus_c3hhej	MGP_C3HHeJ_P0089503	99.2028	99.0641
MGP_NODShiLtJ_G0033732	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0089508	99.9303	99.8257	mus_musculus_cbaj	MGP_CBAJ_P0089439	99.3761	99.2721
MGP_NODShiLtJ_G0033732	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0089508	99.9303	99.8257	mus_musculus_fvbnj	MGP_FVBNJ_P0089487	99.9303	99.8257
MGP_NODShiLtJ_G0033732	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0089508	99.756	99.6166	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0090455	99.756	99.6166
MGP_NODShiLtJ_G0033732	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0089508	99.9303	99.8257	mus_musculus_nzohlltj	MGP_NZOHlLtJ_P0090762	99.3761	99.2721
MGP_NODShiLtJ_G0033732	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0089508	99.756	99.6166	mus_musculus	ENSMUSP00000105243	99.2028	99.0641
MGP_NODShiLtJ_G0033732	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0089508	99.6514	99.3726	mus_musculus_casteij	MGP_CASTEiJ_P0090052	99.1331	98.8558
MGP_NODShiLtJ_G0033732	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0089508	99.9303	99.8257	mus_musculus_akrj	MGP_AKRJ_P0089939	99.3761	99.2721
MGP_NODShiLtJ_G0033732	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0089508	99.9303	99.8257	mus_musculus_wsbeij	MGP_WSBEiJ_P0088550	99.9303	99.8257
MGP_NODShiLtJ_G0033732	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0089508	97.1419	94.4929	rattus_norvegicus	ENSRNOP00000068278	96.6701	94.034
MGP_NODShiLtJ_G0033732	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0089508	99.9303	99.8257	mus_musculus_dba2j	MGP_DBA2J_P0089644	99.3761	99.2721
MGP_NODShiLtJ_G0033732	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0089508	99.7212	99.5469	mus_musculus_pwkphj	MGP_PWKPhJ_P0089486	99.1681	98.9948
MGP_NODShiLtJ_G0033732	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0089508	96.8979	95.7128	mus_pahari	MGP_PahariEiJ_P0053740	97.6466	96.4524
MGP_NODShiLtJ_G0033732	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0089508	99.9303	99.8257	mus_musculus_lpj	MGP_LPJ_P0089680	99.3761	99.2721
MGP_NODShiLtJ_G0033732	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0089508	99.512	99.1286	mus_spicilegus	ENSMSIP00000026894	99.512	99.1286
MGP_NODShiLtJ_G0033732	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0089508	99.5469	99.1286	mus_spretus	MGP_SPRETEiJ_P0088990	99.0635	98.6472

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression