Description

Ensembl ID MGP_NODShiLtJ_G0030162 Gene ID Accession -
Symbol Ptcd1 Alias - Full Name pentatricopeptide repeat domain 1
Status Confidence Length 24959 bases Strand Minus strand
Position 5 : 164813516 - 164838474 RNA binding domain PPR_3 , PPR_long , PPR
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_NODShiLtJ_P0075481 PPR_3 PF13812 5.7e-29 1
MGP_NODShiLtJ_P0075481 PPR_3 PF13812 5.7e-29 2
MGP_NODShiLtJ_P0075481 PPR_3 PF13812 5.7e-29 3
MGP_NODShiLtJ_P0075481 PPR_long PF17177 3.7e-19 4
MGP_NODShiLtJ_P0075481 PPR PF01535 1.5e-17 5
MGP_NODShiLtJ_P0075481 PPR PF01535 1.5e-17 6

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Ptcd1-001 MGP_NODShiLtJ_T0075481 3087 695aa MGP_NODShiLtJ_P0075481"/note="transcript_id=MGP_NODShiLtJ_T0075481
- MGP_NODShiLtJ_T0075482 273 20aa MGP_NODShiLtJ_P0075482"/note="transcript_id=MGP_NODShiLtJ_T0075482

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_NODShiLtJ_G0030162mus_musculus_nodshiltjMGP_NODShiLtJ_P007402542.120323.7822mus_musculus_nodshiltjMGP_NODShiLtJ_P007548121.151111.9424

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_NODShiLtJ_G0030162mus_musculus_nodshiltjMGP_NODShiLtJ_P007548199.856199.5683mus_musculus_129s1svimjMGP_129S1SvImJ_P007582399.856199.5683
MGP_NODShiLtJ_G0030162mus_musculus_nodshiltjMGP_NODShiLtJ_P007548198.273496.9784mus_caroliMGP_CAROLIEiJ_P007213898.273496.9784
MGP_NODShiLtJ_G0030162mus_musculus_nodshiltjMGP_NODShiLtJ_P007548199.856199.7122mus_musculus_balbcjMGP_BALBcJ_P007584999.856199.7122
MGP_NODShiLtJ_G0030162mus_musculus_nodshiltjMGP_NODShiLtJ_P007548199.856199.7122mus_musculus_ajMGP_AJ_P007590099.856199.7122
MGP_NODShiLtJ_G0030162mus_musculus_nodshiltjMGP_NODShiLtJ_P007548199.856199.7122mus_musculus_c3hhejMGP_C3HHeJ_P007546999.856199.7122
MGP_NODShiLtJ_G0030162mus_musculus_nodshiltjMGP_NODShiLtJ_P007548199.856199.5683mus_musculus_cbajMGP_CBAJ_P007542099.856199.5683
MGP_NODShiLtJ_G0030162mus_musculus_nodshiltjMGP_NODShiLtJ_P0075481100100mus_musculus_fvbnjMGP_FVBNJ_P0075469100100
MGP_NODShiLtJ_G0030162mus_musculus_nodshiltjMGP_NODShiLtJ_P007548199.424599.2806mus_musculus_c57bl6njMGP_C57BL6NJ_P007631099.424599.2806
MGP_NODShiLtJ_G0030162mus_musculus_nodshiltjMGP_NODShiLtJ_P007548199.424599.1367mus_musculus_nzohlltjMGP_NZOHlLtJ_P007655799.424599.1367
MGP_NODShiLtJ_G0030162mus_musculus_nodshiltjMGP_NODShiLtJ_P007548199.424599.2806mus_musculusENSMUSP0000003162899.424599.2806
MGP_NODShiLtJ_G0030162mus_musculus_nodshiltjMGP_NODShiLtJ_P007548199.568399.2806mus_musculus_casteijMGP_CASTEiJ_P007601399.568399.2806
MGP_NODShiLtJ_G0030162mus_musculus_nodshiltjMGP_NODShiLtJ_P007548199.856199.5683mus_musculus_akrjMGP_AKRJ_P007580499.856199.5683
MGP_NODShiLtJ_G0030162mus_musculus_nodshiltjMGP_NODShiLtJ_P007548199.424599.1367mus_musculus_wsbeijMGP_WSBEiJ_P007460199.424599.1367
MGP_NODShiLtJ_G0030162mus_musculus_nodshiltjMGP_NODShiLtJ_P007548192.086387.9137rattus_norvegicusENSRNOP0000006809393.294589.0671
MGP_NODShiLtJ_G0030162mus_musculus_nodshiltjMGP_NODShiLtJ_P007548199.856199.7122mus_musculus_dba2jMGP_DBA2J_P007557899.856199.7122
MGP_NODShiLtJ_G0030162mus_musculus_nodshiltjMGP_NODShiLtJ_P007548198.992898.2734mus_musculus_pwkphjMGP_PWKPhJ_P007546498.992898.2734
MGP_NODShiLtJ_G0030162mus_musculus_nodshiltjMGP_NODShiLtJ_P007548195.827393.5252mus_pahariMGP_PahariEiJ_P006034995.965493.6599
MGP_NODShiLtJ_G0030162mus_musculus_nodshiltjMGP_NODShiLtJ_P007548199.856199.5683mus_musculus_lpjMGP_LPJ_P007562499.856199.5683
MGP_NODShiLtJ_G0030162mus_musculus_nodshiltjMGP_NODShiLtJ_P007548198.70597.9856mus_spicilegusENSMSIP0000003471398.70597.9856
MGP_NODShiLtJ_G0030162mus_musculus_nodshiltjMGP_NODShiLtJ_P007548199.136798.2734mus_spretusMGP_SPRETEiJ_P007495799.136798.2734

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression