RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	MGP_NODShiLtJ_G0027855	Gene ID		Accession	-
Symbol	Chd7	Alias	-	Full Name	chromodomain helicase DNA binding protein 7
Status	Confidence	Length	185173 bases	Strand	Plus strand
Position	4 : 5887744 - 6072916	RNA binding domain	ResIII , BRK
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
MGP_NODShiLtJ_P0064305	ResIII	PF04851	4.4e-06	1
MGP_NODShiLtJ_P0064305	BRK	PF07533	3.9e-36	2
MGP_NODShiLtJ_P0064305	BRK	PF07533	3.9e-36	3
MGP_NODShiLtJ_P0064301	ResIII	PF04851	4.5e-06	1
MGP_NODShiLtJ_P0064301	BRK	PF07533	3.9e-36	2
MGP_NODShiLtJ_P0064301	BRK	PF07533	3.9e-36	3
MGP_NODShiLtJ_P0064302	ResIII	PF04851	4.5e-06	1
MGP_NODShiLtJ_P0064302	BRK	PF07533	3.9e-36	2
MGP_NODShiLtJ_P0064302	BRK	PF07533	3.9e-36	3
MGP_NODShiLtJ_P0064304	BRK	PF07533	3.3e-19	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
Chd7-005	MGP_NODShiLtJ_T0064299	4953	No protein	-
-	MGP_NODShiLtJ_T0064300	2381	631aa	MGP_NODShiLtJ_P0064300"/note="transcript_id=MGP_NODShiLtJ_T0064300
-	MGP_NODShiLtJ_T0064301	9445	2986aa	MGP_NODShiLtJ_P0064301"/note="transcript_id=MGP_NODShiLtJ_T0064301
-	MGP_NODShiLtJ_T0064302	10216	2986aa	MGP_NODShiLtJ_P0064302"/note="transcript_id=MGP_NODShiLtJ_T0064302
-	MGP_NODShiLtJ_T0064303	458	19aa	MGP_NODShiLtJ_P0064303"/note="transcript_id=MGP_NODShiLtJ_T0064303
-	MGP_NODShiLtJ_T0064304	3463	941aa	MGP_NODShiLtJ_P0064304"/note="transcript_id=MGP_NODShiLtJ_T0064304
-	MGP_NODShiLtJ_T0064305	11046	2985aa	MGP_NODShiLtJ_P0064305"/note="transcript_id=MGP_NODShiLtJ_T0064305
-	MGP_NODShiLtJ_T0064306	741	No protein	-

Gene Model

Click here to download MGP_NODShiLtJ_G0027855's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download MGP_NODShiLtJ_G0027855's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_NODShiLtJ_G0027855	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0051086	42.2957	24.5165	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0064302	22.706	13.1614
MGP_NODShiLtJ_G0027855	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0084044	41.8719	24.959	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0064302	25.6196	15.2713
MGP_NODShiLtJ_G0027855	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0079811	37.9938	23.3888	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0064302	24.4809	15.0703
MGP_NODShiLtJ_G0027855	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0062348	53.1111	35.1111	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0064302	16.008	10.5827
MGP_NODShiLtJ_G0027855	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0066766	39.759	24.2303	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0064302	9.94642	6.06162
MGP_NODShiLtJ_G0027855	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0096557	34.3548	19.8387	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0064302	14.2666	8.23845
MGP_NODShiLtJ_G0027855	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0051365	43.5407	19.1388	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0064302	3.04756	1.33958
MGP_NODShiLtJ_G0027855	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0093730	32.2647	17.3261	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0064302	15.8406	8.50636
MGP_NODShiLtJ_G0027855	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0064387	37.9233	21.5576	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0064302	11.2525	6.39652
MGP_NODShiLtJ_G0027855	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0089508	63.9247	51.2374	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0064302	61.42	49.2297
MGP_NODShiLtJ_G0027855	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0037133	34.4418	20.7838	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0064302	9.71199	5.86068
MGP_NODShiLtJ_G0027855	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0024360	17.6225	9.43847	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0064302	9.87944	5.29136
MGP_NODShiLtJ_G0027855	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0069216	38.6783	24.0266	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0064302	25.2847	15.7066
MGP_NODShiLtJ_G0027855	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0038610	34.3687	19.1762	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0064302	17.0462	9.51105
MGP_NODShiLtJ_G0027855	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0096618	22.8595	11.5913	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0064302	18.9551	9.61152
MGP_NODShiLtJ_G0027855	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0077501	36.8266	22.7228	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0064302	12.5921	7.76959
MGP_NODShiLtJ_G0027855	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0020234	35.0549	19.5604	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0064302	10.6832	5.96115
MGP_NODShiLtJ_G0027855	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0091023	41.0161	24.4734	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0064302	22.1701	13.2284
MGP_NODShiLtJ_G0027855	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0058687	61.7115	47.547	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0064302	56.0281	43.1681
MGP_NODShiLtJ_G0027855	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0029720	37.0316	23.747	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0064302	25.4856	16.3429
MGP_NODShiLtJ_G0027855	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0089134	51.2169	33.0159	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0064302	16.209	10.4488
MGP_NODShiLtJ_G0027855	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0095509	51.5442	33.2268	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0064302	16.209	10.4488
MGP_NODShiLtJ_G0027855	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0059867	28.7139	15.9521	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0064302	9.64501	5.35834
MGP_NODShiLtJ_G0027855	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0051306	23.7554	12.7706	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0064302	14.7019	7.90355
MGP_NODShiLtJ_G0027855	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0056579	32.6491	18.3451	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0064302	17.0462	9.57803
MGP_NODShiLtJ_G0027855	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0072953	20.8455	10.0583	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0064302	4.78902	2.31078
MGP_NODShiLtJ_G0027855	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0086426	20.9046	12.5917	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0064302	22.9069	13.7977
MGP_NODShiLtJ_G0027855	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0086430	21.8023	13.1137	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0064302	22.6055	13.5968
MGP_NODShiLtJ_G0027855	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0021668	35.2666	18.4284	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0064302	12.6256	6.59746
MGP_NODShiLtJ_G0027855	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0062440	29.8507	15.1888	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0064302	11.3865	5.7937

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_NODShiLtJ_G0027855	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0064302	100	100	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0064635	100	100
MGP_NODShiLtJ_G0027855	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0064302	99.4307	99.2632	mus_caroli	MGP_CAROLIEiJ_P0061371	99.4307	99.2632
MGP_NODShiLtJ_G0027855	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0064302	100	100	mus_musculus_balbcj	MGP_BALBcJ_P0064583	100	100
MGP_NODShiLtJ_G0027855	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0064302	100	100	mus_musculus_aj	MGP_AJ_P0064663	100	100
MGP_NODShiLtJ_G0027855	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0064302	100	100	mus_musculus_c3hhej	MGP_C3HHeJ_P0064273	100	100
MGP_NODShiLtJ_G0027855	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0064302	100	100	mus_musculus_cbaj	MGP_CBAJ_P0064230	100	100
MGP_NODShiLtJ_G0027855	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0064302	100	100	mus_musculus_fvbnj	MGP_FVBNJ_P0064301	100	100
MGP_NODShiLtJ_G0027855	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0064302	100	100	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0065078	100	100
MGP_NODShiLtJ_G0027855	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0064302	100	100	mus_musculus_nzohlltj	MGP_NZOHlLtJ_P0065293	100	100
MGP_NODShiLtJ_G0027855	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0064302	100	100	mus_musculus	ENSMUSP00000059079	100	100
MGP_NODShiLtJ_G0027855	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0064302	99.8995	99.8995	mus_musculus_casteij	MGP_CASTEiJ_P0064593	99.8995	99.8995
MGP_NODShiLtJ_G0027855	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0064302	100	100	mus_musculus_akrj	MGP_AKRJ_P0064605	100	100
MGP_NODShiLtJ_G0027855	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0064302	100	100	mus_musculus_wsbeij	MGP_WSBEiJ_P0063529	100	100
MGP_NODShiLtJ_G0027855	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0064302	98.359	97.2204	rattus_norvegicus	ENSRNOP00000008901	98.392	97.2529
MGP_NODShiLtJ_G0027855	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0064302	100	100	mus_musculus_dba2j	MGP_DBA2J_P0064344	100	100
MGP_NODShiLtJ_G0027855	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0064302	99.866	99.866	mus_musculus_pwkphj	MGP_PWKPhJ_P0064123	99.866	99.866
MGP_NODShiLtJ_G0027855	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0064302	98.8948	98.292	mus_pahari	MGP_PahariEiJ_P0057041	98.8948	98.292
MGP_NODShiLtJ_G0027855	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0064302	100	100	mus_musculus_lpj	MGP_LPJ_P0064487	100	100
MGP_NODShiLtJ_G0027855	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0064302	99.6316	99.4642	mus_spicilegus	ENSMSIP00000036968	99.665	99.4975
MGP_NODShiLtJ_G0027855	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0064302	99.7321	99.5646	mus_spretus	MGP_SPRETEiJ_P0063797	99.7321	99.5646

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression