RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	MGP_NODShiLtJ_G0027804	Gene ID		Accession	-
Symbol	Fubp1	Alias	-	Full Name	far upstream element (FUSE) binding protein 1
Status	Confidence	Length	27617 bases	Strand	Plus strand
Position	3 : 175522995 - 175550611	RNA binding domain	KH_2 , DUF1897 , KH_1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
MGP_NODShiLtJ_P0063993	KH_2	PF07650	9e-23	1
MGP_NODShiLtJ_P0063993	KH_2	PF07650	9e-23	2
MGP_NODShiLtJ_P0063993	KH_1	PF00013	1.2e-69	3
MGP_NODShiLtJ_P0063993	KH_1	PF00013	1.2e-69	4
MGP_NODShiLtJ_P0063993	KH_1	PF00013	1.2e-69	5
MGP_NODShiLtJ_P0063993	KH_1	PF00013	1.2e-69	6
MGP_NODShiLtJ_P0063997	KH_2	PF07650	2.1e-22	1
MGP_NODShiLtJ_P0063997	KH_2	PF07650	2.1e-22	2
MGP_NODShiLtJ_P0063997	DUF1897	PF09005	9.3e-11	3
MGP_NODShiLtJ_P0063997	DUF1897	PF09005	9.3e-11	4
MGP_NODShiLtJ_P0063997	KH_1	PF00013	3.8e-69	5
MGP_NODShiLtJ_P0063997	KH_1	PF00013	3.8e-69	6
MGP_NODShiLtJ_P0063997	KH_1	PF00013	3.8e-69	7
MGP_NODShiLtJ_P0063997	KH_1	PF00013	3.8e-69	8
MGP_NODShiLtJ_P0063994	KH_2	PF07650	2.2e-22	1
MGP_NODShiLtJ_P0063994	KH_2	PF07650	2.2e-22	2
MGP_NODShiLtJ_P0063994	DUF1897	PF09005	9.6e-11	3
MGP_NODShiLtJ_P0063994	DUF1897	PF09005	9.6e-11	4
MGP_NODShiLtJ_P0063994	KH_1	PF00013	4.1e-69	5
MGP_NODShiLtJ_P0063994	KH_1	PF00013	4.1e-69	6
MGP_NODShiLtJ_P0063994	KH_1	PF00013	4.1e-69	7
MGP_NODShiLtJ_P0063994	KH_1	PF00013	4.1e-69	8
MGP_NODShiLtJ_P0063992	KH_2	PF07650	2.3e-22	1
MGP_NODShiLtJ_P0063992	KH_2	PF07650	2.3e-22	2
MGP_NODShiLtJ_P0063992	DUF1897	PF09005	9.9e-11	3
MGP_NODShiLtJ_P0063992	DUF1897	PF09005	9.9e-11	4
MGP_NODShiLtJ_P0063992	KH_1	PF00013	4.2e-69	5
MGP_NODShiLtJ_P0063992	KH_1	PF00013	4.2e-69	6
MGP_NODShiLtJ_P0063992	KH_1	PF00013	4.2e-69	7
MGP_NODShiLtJ_P0063992	KH_1	PF00013	4.2e-69	8
MGP_NODShiLtJ_P0063990	KH_2	PF07650	2.3e-22	1
MGP_NODShiLtJ_P0063990	KH_2	PF07650	2.3e-22	2
MGP_NODShiLtJ_P0063990	DUF1897	PF09005	9.2e-11	3
MGP_NODShiLtJ_P0063990	DUF1897	PF09005	9.2e-11	4
MGP_NODShiLtJ_P0063990	KH_1	PF00013	3.8e-69	5
MGP_NODShiLtJ_P0063990	KH_1	PF00013	3.8e-69	6
MGP_NODShiLtJ_P0063990	KH_1	PF00013	3.8e-69	7
MGP_NODShiLtJ_P0063990	KH_1	PF00013	3.8e-69	8
MGP_NODShiLtJ_P0063998	KH_2	PF07650	2.3e-22	1
MGP_NODShiLtJ_P0063998	KH_2	PF07650	2.3e-22	2
MGP_NODShiLtJ_P0063998	DUF1897	PF09005	9.2e-11	3
MGP_NODShiLtJ_P0063998	DUF1897	PF09005	9.2e-11	4
MGP_NODShiLtJ_P0063998	KH_1	PF00013	3.8e-69	5
MGP_NODShiLtJ_P0063998	KH_1	PF00013	3.8e-69	6
MGP_NODShiLtJ_P0063998	KH_1	PF00013	3.8e-69	7
MGP_NODShiLtJ_P0063998	KH_1	PF00013	3.8e-69	8
MGP_NODShiLtJ_P0063996	KH_2	PF07650	3.1e-22	1
MGP_NODShiLtJ_P0063996	KH_2	PF07650	3.1e-22	2
MGP_NODShiLtJ_P0063996	DUF1897	PF09005	1.3e-10	3
MGP_NODShiLtJ_P0063996	DUF1897	PF09005	1.3e-10	4
MGP_NODShiLtJ_P0063996	KH_1	PF00013	6e-69	5
MGP_NODShiLtJ_P0063996	KH_1	PF00013	6e-69	6
MGP_NODShiLtJ_P0063996	KH_1	PF00013	6e-69	7
MGP_NODShiLtJ_P0063996	KH_1	PF00013	6e-69	8
MGP_NODShiLtJ_P0063991	KH_2	PF07650	4.2e-10	1
MGP_NODShiLtJ_P0063991	KH_1	PF00013	1.1e-37	2
MGP_NODShiLtJ_P0063991	KH_1	PF00013	1.1e-37	3
MGP_NODShiLtJ_P0064000	KH_2	PF07650	4.9e-06	1
MGP_NODShiLtJ_P0064000	KH_1	PF00013	1.1e-16	2
MGP_NODShiLtJ_P0064002	DUF1897	PF09005	5.4e-12	1
MGP_NODShiLtJ_P0064002	DUF1897	PF09005	5.4e-12	2
MGP_NODShiLtJ_P0064004	DUF1897	PF09005	9.4e-12	1
MGP_NODShiLtJ_P0064004	DUF1897	PF09005	9.4e-12	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
Fubp1-001	MGP_NODShiLtJ_T0063990	6317	642aa	MGP_NODShiLtJ_P0063990"/note="transcript_id=MGP_NODShiLtJ_T0063990
-	MGP_NODShiLtJ_T0063991	1040	306aa	MGP_NODShiLtJ_P0063991"/note="transcript_id=MGP_NODShiLtJ_T0063991
-	MGP_NODShiLtJ_T0063992	2552	654aa	MGP_NODShiLtJ_P0063992"/note="transcript_id=MGP_NODShiLtJ_T0063992
-	MGP_NODShiLtJ_T0063993	3163	523aa	MGP_NODShiLtJ_P0063993"/note="transcript_id=MGP_NODShiLtJ_T0063993
-	MGP_NODShiLtJ_T0063994	2526	651aa	MGP_NODShiLtJ_P0063994"/note="transcript_id=MGP_NODShiLtJ_T0063994
-	MGP_NODShiLtJ_T0063995	1944	69aa	MGP_NODShiLtJ_P0063995"/note="transcript_id=MGP_NODShiLtJ_T0063995
-	MGP_NODShiLtJ_T0063996	4846	700aa	MGP_NODShiLtJ_P0063996"/note="transcript_id=MGP_NODShiLtJ_T0063996
-	MGP_NODShiLtJ_T0063997	2374	643aa	MGP_NODShiLtJ_P0063997"/note="transcript_id=MGP_NODShiLtJ_T0063997
-	MGP_NODShiLtJ_T0063998	4319	642aa	MGP_NODShiLtJ_P0063998"/note="transcript_id=MGP_NODShiLtJ_T0063998
-	MGP_NODShiLtJ_T0063999	432	No protein	-
-	MGP_NODShiLtJ_T0064000	585	149aa	MGP_NODShiLtJ_P0064000"/note="transcript_id=MGP_NODShiLtJ_T0064000
-	MGP_NODShiLtJ_T0064001	512	No protein	-
-	MGP_NODShiLtJ_T0064002	796	141aa	MGP_NODShiLtJ_P0064002"/note="transcript_id=MGP_NODShiLtJ_T0064002
-	MGP_NODShiLtJ_T0064003	800	173aa	MGP_NODShiLtJ_P0064003"/note="transcript_id=MGP_NODShiLtJ_T0064003
-	MGP_NODShiLtJ_T0064004	809	156aa	MGP_NODShiLtJ_P0064004"/note="transcript_id=MGP_NODShiLtJ_T0064004
-	MGP_NODShiLtJ_T0064005	5099	No protein	-
-	MGP_NODShiLtJ_T0064006	424	No protein	-
-	MGP_NODShiLtJ_T0064007	3998	No protein	-
-	MGP_NODShiLtJ_T0064008	665	No protein	-

Gene Model

Click here to download MGP_NODShiLtJ_G0027804's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download MGP_NODShiLtJ_G0027804's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_NODShiLtJ_G0027804	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0078228	38.764	23.0337	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0063992	21.1009	12.5382
MGP_NODShiLtJ_G0027804	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0034542	31.1637	16.9625	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0063992	24.159	13.1498
MGP_NODShiLtJ_G0027804	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0025651	37.7358	21.5633	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0063992	21.4067	12.2324
MGP_NODShiLtJ_G0027804	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0077112	29.5337	15.8895	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0063992	26.1468	14.0673
MGP_NODShiLtJ_G0027804	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0093682	40.1985	24.0695	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0063992	24.7706	14.8318
MGP_NODShiLtJ_G0027804	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0084479	34.1564	18.107	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0063992	12.6911	6.72783
MGP_NODShiLtJ_G0027804	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0037005	32.4503	19.2053	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0063992	22.4771	13.3028
MGP_NODShiLtJ_G0027804	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0053671	70.4348	59.4783	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0063992	61.9266	52.2936
MGP_NODShiLtJ_G0027804	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0048020	66.0428	58.1551	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0063992	75.5352	66.5138
MGP_NODShiLtJ_G0027804	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0081528	30.8943	16.6667	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0063992	23.2416	12.5382
MGP_NODShiLtJ_G0027804	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0081527	30.0395	16.2055	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0063992	23.2416	12.5382
MGP_NODShiLtJ_G0027804	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0043531	28.5473	14.8649	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0063992	25.841	13.4557
MGP_NODShiLtJ_G0027804	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0031626	28.7695	15.2513	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0063992	25.3823	13.4557
MGP_NODShiLtJ_G0027804	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0042481	38.1215	21.8232	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0063992	21.1009	12.0795

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_NODShiLtJ_G0027804	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0063992	100	100	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0064320	100	100
MGP_NODShiLtJ_G0027804	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0063992	99.8471	99.6942	mus_caroli	MGP_CAROLIEiJ_P0061039	99.8471	99.6942
MGP_NODShiLtJ_G0027804	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0063992	100	100	mus_musculus_balbcj	MGP_BALBcJ_P0064270	99.8473	99.8473
MGP_NODShiLtJ_G0027804	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0063992	100	100	mus_musculus_aj	MGP_AJ_P0064348	99.8473	99.8473
MGP_NODShiLtJ_G0027804	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0063992	100	100	mus_musculus_c3hhej	MGP_C3HHeJ_P0063959	99.8473	99.8473
MGP_NODShiLtJ_G0027804	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0063992	100	100	mus_musculus_cbaj	MGP_CBAJ_P0063920	100	100
MGP_NODShiLtJ_G0027804	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0063992	100	100	mus_musculus_fvbnj	MGP_FVBNJ_P0063991	100	100
MGP_NODShiLtJ_G0027804	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0063992	100	100	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0064764	100	100
MGP_NODShiLtJ_G0027804	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0063992	100	100	mus_musculus_nzohlltj	MGP_NZOHlLtJ_P0064982	100	100
MGP_NODShiLtJ_G0027804	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0063992	100	100	mus_musculus	ENSMUSP00000143354	100	100
MGP_NODShiLtJ_G0027804	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0063992	100	99.8471	mus_musculus_casteij	MGP_CASTEiJ_P0064275	100	99.8471
MGP_NODShiLtJ_G0027804	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0063992	100	100	mus_musculus_akrj	MGP_AKRJ_P0064291	100	100
MGP_NODShiLtJ_G0027804	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0063992	100	100	mus_musculus_wsbeij	MGP_WSBEiJ_P0063216	100	100
MGP_NODShiLtJ_G0027804	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0063992	98.0122	97.5535	rattus_norvegicus	ENSRNOP00000077531	94.963	94.5185
MGP_NODShiLtJ_G0027804	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0063992	100	100	mus_musculus_dba2j	MGP_DBA2J_P0064033	100	100
MGP_NODShiLtJ_G0027804	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0063992	100	100	mus_musculus_pwkphj	MGP_PWKPhJ_P0063809	100	100
MGP_NODShiLtJ_G0027804	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0063992	99.5413	99.3884	mus_pahari	MGP_PahariEiJ_P0071971	99.3893	99.2366
MGP_NODShiLtJ_G0027804	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0063992	100	100	mus_musculus_lpj	MGP_LPJ_P0064175	100	100
MGP_NODShiLtJ_G0027804	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0063992	98.4709	98.1651	mus_spicilegus	ENSMSIP00000028928	96.6967	96.3964
MGP_NODShiLtJ_G0027804	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0063992	100	99.8471	mus_spretus	MGP_SPRETEiJ_P0063482	100	99.8471

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression