RBPWorld - a comprehensive database of RNA Binding Proteins

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Description

Ensembl ID	MGP_NODShiLtJ_G0027414	Gene ID		Accession	-
Symbol	Mrps21	Alias	-	Full Name	mitochondrial ribosomal protein S21
Status	Confidence	Length	8774 bases	Strand	Minus strand
Position	3 : 109985414 - 109994187	RNA binding domain	Ribosomal_S21
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
MGP_NODShiLtJ_P0062183	Ribosomal_S21	PF01165	2e-13	1
MGP_NODShiLtJ_P0062184	Ribosomal_S21	PF01165	2e-13	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
Mrps21-001	MGP_NODShiLtJ_T0062183	488	87aa	MGP_NODShiLtJ_P0062183"/note="transcript_id=MGP_NODShiLtJ_T0062183
-	MGP_NODShiLtJ_T0062184	405	87aa	MGP_NODShiLtJ_P0062184"/note="transcript_id=MGP_NODShiLtJ_T0062184
-	MGP_NODShiLtJ_T0062185	455	No protein	-
-	MGP_NODShiLtJ_T0062186	244	44aa	MGP_NODShiLtJ_P0062186"/note="transcript_id=MGP_NODShiLtJ_T0062186

Gene Model

Click here to download MGP_NODShiLtJ_G0027414's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download MGP_NODShiLtJ_G0027414's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_NODShiLtJ_G0027414

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_NODShiLtJ_G0027414	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0062183	98.8506	98.8506	mus_caroli	MGP_CAROLIEiJ_P0059247	98.8506	98.8506
MGP_NODShiLtJ_G0027414	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0062183	100	100	mus_musculus_balbcj	MGP_BALBcJ_P0062446	100	100
MGP_NODShiLtJ_G0027414	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0062183	100	100	mus_musculus_aj	MGP_AJ_P0062520	100	100
MGP_NODShiLtJ_G0027414	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0062183	100	100	mus_musculus_c3hhej	MGP_C3HHeJ_P0062129	100	100
MGP_NODShiLtJ_G0027414	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0062183	100	100	mus_musculus_nzohlltj	MGP_NZOHlLtJ_P0063137	100	100
MGP_NODShiLtJ_G0027414	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0062183	100	100	mus_musculus	ENSMUSP00000066990	100	100
MGP_NODShiLtJ_G0027414	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0062183	100	100	mus_musculus_casteij	MGP_CASTEiJ_P0062434	100	100
MGP_NODShiLtJ_G0027414	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0062183	100	100	mus_musculus_wsbeij	MGP_WSBEiJ_P0061405	100	100
MGP_NODShiLtJ_G0027414	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0062183	97.7011	96.5517	rattus_norvegicus	ENSRNOP00000038594	97.7011	96.5517
MGP_NODShiLtJ_G0027414	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0062183	100	100	mus_musculus_dba2j	MGP_DBA2J_P0062209	100	100
MGP_NODShiLtJ_G0027414	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0062183	100	100	mus_musculus_pwkphj	MGP_PWKPhJ_P0061972	100	100
MGP_NODShiLtJ_G0027414	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0062183	98.8506	98.8506	mus_pahari	MGP_PahariEiJ_P0070215	98.8506	98.8506
MGP_NODShiLtJ_G0027414	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0062183	100	98.8506	mus_spicilegus	ENSMSIP00000008353	100	98.8506
MGP_NODShiLtJ_G0027414	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0062183	98.8506	97.7011	mus_spretus	MGP_SPRETEiJ_P0061623	98.8506	97.7011

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression