RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	MGP_NODShiLtJ_G0027411	Gene ID		Accession	-
Symbol	Tars2	Alias	-	Full Name	threonyl-tRNA synthetase 2, mitochondrial (putative)
Status	Confidence	Length	20186 bases	Strand	Minus strand
Position	3 : 109840129 - 109860314	RNA binding domain	HGTP_anticodon , tRNA_SAD , tRNA-synt_2b
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
MGP_NODShiLtJ_P0062152	HGTP_anticodon	PF03129	1.7e-17	1
MGP_NODShiLtJ_P0062152	tRNA_SAD	PF07973	4e-10	2
MGP_NODShiLtJ_P0062152	tRNA-synt_2b	PF00587	2.4e-31	3
MGP_NODShiLtJ_P0062151	HGTP_anticodon	PF03129	1.8e-17	1
MGP_NODShiLtJ_P0062151	tRNA_SAD	PF07973	3.4e-10	2
MGP_NODShiLtJ_P0062151	tRNA-synt_2b	PF00587	2.1e-29	3
MGP_NODShiLtJ_P0062154	HGTP_anticodon	PF03129	1.9e-17	1
MGP_NODShiLtJ_P0062154	tRNA_SAD	PF07973	3.7e-10	2
MGP_NODShiLtJ_P0062154	tRNA-synt_2b	PF00587	2.5e-31	3
MGP_NODShiLtJ_P0062160	tRNA_SAD	PF07973	9.4e-11	1
MGP_NODShiLtJ_P0062156	tRNA_SAD	PF07973	1.6e-10	1
MGP_NODShiLtJ_P0062150	tRNA_SAD	PF07973	4.3e-10	1
MGP_NODShiLtJ_P0062162	tRNA_SAD	PF07973	6.4e-10	1
MGP_NODShiLtJ_P0062158	tRNA_SAD	PF07973	5.9e-09	1
MGP_NODShiLtJ_P0062159	tRNA_SAD	PF07973	7.3e-09	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
Tars2-006	MGP_NODShiLtJ_T0062149	3614	No protein	-
-	MGP_NODShiLtJ_T0062150	1981	264aa	MGP_NODShiLtJ_P0062150"/note="transcript_id=MGP_NODShiLtJ_T0062150
-	MGP_NODShiLtJ_T0062151	2313	697aa	MGP_NODShiLtJ_P0062151"/note="transcript_id=MGP_NODShiLtJ_T0062151
-	MGP_NODShiLtJ_T0062152	2157	642aa	MGP_NODShiLtJ_P0062152"/note="transcript_id=MGP_NODShiLtJ_T0062152
-	MGP_NODShiLtJ_T0062153	2037	177aa	MGP_NODShiLtJ_P0062153"/note="transcript_id=MGP_NODShiLtJ_T0062153
-	MGP_NODShiLtJ_T0062154	2400	723aa	MGP_NODShiLtJ_P0062154"/note="transcript_id=MGP_NODShiLtJ_T0062154
-	MGP_NODShiLtJ_T0062155	577	No protein	-
-	MGP_NODShiLtJ_T0062156	3229	423aa	MGP_NODShiLtJ_P0062156"/note="transcript_id=MGP_NODShiLtJ_T0062156
-	MGP_NODShiLtJ_T0062157	643	No protein	-
-	MGP_NODShiLtJ_T0062158	623	104aa	MGP_NODShiLtJ_P0062158"/note="transcript_id=MGP_NODShiLtJ_T0062158
-	MGP_NODShiLtJ_T0062159	946	142aa	MGP_NODShiLtJ_P0062159"/note="transcript_id=MGP_NODShiLtJ_T0062159
-	MGP_NODShiLtJ_T0062160	661	209aa	MGP_NODShiLtJ_P0062160"/note="transcript_id=MGP_NODShiLtJ_T0062160
-	MGP_NODShiLtJ_T0062161	636	No protein	-
-	MGP_NODShiLtJ_T0062162	689	43aa	MGP_NODShiLtJ_P0062162"/note="transcript_id=MGP_NODShiLtJ_T0062162
-	MGP_NODShiLtJ_T0062163	457	No protein	-
-	MGP_NODShiLtJ_T0062164	787	No protein	-
-	MGP_NODShiLtJ_T0062165	714	No protein	-
-	MGP_NODShiLtJ_T0062166	732	79aa	MGP_NODShiLtJ_P0062166"/note="transcript_id=MGP_NODShiLtJ_T0062166
-	MGP_NODShiLtJ_T0062167	625	11aa	MGP_NODShiLtJ_P0062167"/note="transcript_id=MGP_NODShiLtJ_T0062167

Gene Model

Click here to download MGP_NODShiLtJ_G0027411's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download MGP_NODShiLtJ_G0027411's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_NODShiLtJ_G0027411	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0040346	68.4211	52.6316	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0062154	68.3264	52.5588
MGP_NODShiLtJ_G0027411	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0083918	62.9114	49.7468	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0062154	68.7414	54.3568
MGP_NODShiLtJ_G0027411	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0066278	33.4638	19.7652	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0062154	23.6515	13.9696
MGP_NODShiLtJ_G0027411	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0044603	34.2262	19.3452	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0062154	15.9059	8.99032

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_NODShiLtJ_G0027411	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0062154	100	100	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0062466	100	100
MGP_NODShiLtJ_G0027411	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0062154	99.1701	98.3402	mus_caroli	MGP_CAROLIEiJ_P0059214	99.1701	98.3402
MGP_NODShiLtJ_G0027411	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0062154	100	100	mus_musculus_balbcj	MGP_BALBcJ_P0062417	100	100
MGP_NODShiLtJ_G0027411	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0062154	100	100	mus_musculus_aj	MGP_AJ_P0062487	100	100
MGP_NODShiLtJ_G0027411	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0062154	100	100	mus_musculus_c3hhej	MGP_C3HHeJ_P0062100	100	100
MGP_NODShiLtJ_G0027411	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0062154	100	100	mus_musculus_cbaj	MGP_CBAJ_P0062071	100	100
MGP_NODShiLtJ_G0027411	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0062154	100	100	mus_musculus_fvbnj	MGP_FVBNJ_P0062159	100	100
MGP_NODShiLtJ_G0027411	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0062154	100	100	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0062913	100	100
MGP_NODShiLtJ_G0027411	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0062154	100	100	mus_musculus_nzohlltj	MGP_NZOHlLtJ_P0063107	100	100
MGP_NODShiLtJ_G0027411	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0062154	100	100	mus_musculus	ENSMUSP00000029752	100	100
MGP_NODShiLtJ_G0027411	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0062154	99.7234	99.7234	mus_musculus_casteij	MGP_CASTEiJ_P0062400	99.7234	99.7234
MGP_NODShiLtJ_G0027411	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0062154	100	100	mus_musculus_akrj	MGP_AKRJ_P0062426	100	100
MGP_NODShiLtJ_G0027411	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0062154	100	99.8617	mus_musculus_wsbeij	MGP_WSBEiJ_P0061375	100	99.8617
MGP_NODShiLtJ_G0027411	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0062154	95.9889	93.9142	rattus_norvegicus	ENSRNOP00000072886	95.9889	93.9142
MGP_NODShiLtJ_G0027411	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0062154	100	100	mus_musculus_dba2j	MGP_DBA2J_P0062179	100	100
MGP_NODShiLtJ_G0027411	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0062154	100	100	mus_musculus_pwkphj	MGP_PWKPhJ_P0061941	100	100
MGP_NODShiLtJ_G0027411	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0062154	98.3402	97.5104	mus_pahari	MGP_PahariEiJ_P0070182	98.3402	97.5104
MGP_NODShiLtJ_G0027411	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0062154	100	100	mus_musculus_lpj	MGP_LPJ_P0062320	100	100
MGP_NODShiLtJ_G0027411	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0062154	99.7234	99.5851	mus_spicilegus	ENSMSIP00000008003	99.7234	99.5851
MGP_NODShiLtJ_G0027411	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0062154	99.5851	99.4467	mus_spretus	MGP_SPRETEiJ_P0061590	99.5851	99.4467

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression