RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | MGP_NODShiLtJ_G0026846 | Gene ID |
|
Accession |
- |
Symbol |
Prpf6 |
Alias |
- |
Full Name |
pre-mRNA splicing factor 6 |
Status |
Confidence |
Length |
76548 bases |
Strand |
Plus strand |
Position |
2 : 203211838 - 203288385 |
RNA binding domain |
PRP1_N |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
MGP_NODShiLtJ_P0059631 |
PRP1_N |
PF06424 |
8.4e-52 |
1 |
MGP_NODShiLtJ_P0059626 |
PRP1_N |
PF06424 |
2.5e-09 |
1 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
Prpf6-001 |
MGP_NODShiLtJ_T0059626 |
350 |
51aa |
MGP_NODShiLtJ_P0059626"/note="transcript_id=MGP_NODShiLtJ_T0059626 |
- |
MGP_NODShiLtJ_T0059630 |
2437 |
No protein |
- |
- |
MGP_NODShiLtJ_T0059631 |
2940 |
948aa |
MGP_NODShiLtJ_P0059631"/note="transcript_id=MGP_NODShiLtJ_T0059631 |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_NODShiLtJ_G0026846 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0087582 | 37.3099 | 19.7661 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0059631 | 33.6498 | 17.827 |
MGP_NODShiLtJ_G0026846 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0057767 | 43.913 | 23.0435 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0059631 | 31.962 | 16.7722 |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_NODShiLtJ_G0026846 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0059631 | 99.0506 | 99.0506 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0059936 | 99.7875 | 99.7875 |
MGP_NODShiLtJ_G0026846 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0059631 | 92.4051 | 92.4051 | mus_caroli | MGP_CAROLIEiJ_P0056799 | 99.3197 | 99.3197 |
MGP_NODShiLtJ_G0026846 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0059631 | 99.0506 | 99.0506 | mus_musculus_balbcj | MGP_BALBcJ_P0059897 | 99.7875 | 99.7875 |
MGP_NODShiLtJ_G0026846 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0059631 | 99.0506 | 99.0506 | mus_musculus_aj | MGP_AJ_P0059970 | 99.7875 | 99.7875 |
MGP_NODShiLtJ_G0026846 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0059631 | 99.0506 | 99.0506 | mus_musculus_c3hhej | MGP_C3HHeJ_P0059586 | 99.7875 | 99.7875 |
MGP_NODShiLtJ_G0026846 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0059631 | 99.0506 | 99.0506 | mus_musculus_cbaj | MGP_CBAJ_P0059558 | 99.7875 | 99.7875 |
MGP_NODShiLtJ_G0026846 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0059631 | 99.0506 | 99.0506 | mus_musculus_fvbnj | MGP_FVBNJ_P0059646 | 99.7875 | 99.7875 |
MGP_NODShiLtJ_G0026846 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0059631 | 99.0506 | 99.0506 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0060362 | 99.7875 | 99.7875 |
MGP_NODShiLtJ_G0026846 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0059631 | 99.0506 | 99.0506 | mus_musculus_nzohlltj | MGP_NZOHlLtJ_P0060552 | 99.7875 | 99.7875 |
MGP_NODShiLtJ_G0026846 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0059631 | 99.0506 | 99.0506 | mus_musculus | ENSMUSP00000002529 | 99.7875 | 99.7875 |
MGP_NODShiLtJ_G0026846 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0059631 | 99.0506 | 99.0506 | mus_musculus_casteij | MGP_CASTEiJ_P0059879 | 99.7875 | 99.7875 |
MGP_NODShiLtJ_G0026846 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0059631 | 99.0506 | 99.0506 | mus_musculus_akrj | MGP_AKRJ_P0059905 | 99.7875 | 99.7875 |
MGP_NODShiLtJ_G0026846 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0059631 | 99.0506 | 99.0506 | mus_musculus_wsbeij | MGP_WSBEiJ_P0058858 | 99.7875 | 99.7875 |
MGP_NODShiLtJ_G0026846 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0059631 | 97.4684 | 97.0464 | rattus_norvegicus | ENSRNOP00000097317 | 92.0319 | 91.6335 |
MGP_NODShiLtJ_G0026846 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0059631 | 99.0506 | 99.0506 | mus_musculus_dba2j | MGP_DBA2J_P0059665 | 99.7875 | 99.7875 |
MGP_NODShiLtJ_G0026846 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0059631 | 99.0506 | 99.0506 | mus_musculus_pwkphj | MGP_PWKPhJ_P0059447 | 99.7875 | 99.7875 |
MGP_NODShiLtJ_G0026846 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0059631 | 99.0506 | 98.9451 | mus_pahari | MGP_PahariEiJ_P0067824 | 99.7875 | 99.6812 |
MGP_NODShiLtJ_G0026846 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0059631 | 87.3418 | 87.3418 | mus_musculus_lpj | MGP_LPJ_P0059775 | 99.759 | 99.759 |
MGP_NODShiLtJ_G0026846 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0059631 | 99.0506 | 99.0506 | mus_spicilegus | ENSMSIP00000014287 | 99.7875 | 99.7875 |
MGP_NODShiLtJ_G0026846 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0059631 | 99.0506 | 99.0506 | mus_spretus | MGP_SPRETEiJ_P0059033 | 99.7875 | 99.7875 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |