Description

Ensembl ID MGP_NODShiLtJ_G0026846 Gene ID Accession -
Symbol Prpf6 Alias - Full Name pre-mRNA splicing factor 6
Status Confidence Length 76548 bases Strand Plus strand
Position 2 : 203211838 - 203288385 RNA binding domain PRP1_N
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_NODShiLtJ_P0059631 PRP1_N PF06424 8.4e-52 1
MGP_NODShiLtJ_P0059626 PRP1_N PF06424 2.5e-09 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Prpf6-001 MGP_NODShiLtJ_T0059626 350 51aa MGP_NODShiLtJ_P0059626"/note="transcript_id=MGP_NODShiLtJ_T0059626
- MGP_NODShiLtJ_T0059630 2437 No protein -
- MGP_NODShiLtJ_T0059631 2940 948aa MGP_NODShiLtJ_P0059631"/note="transcript_id=MGP_NODShiLtJ_T0059631

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_NODShiLtJ_G0026846mus_musculus_nodshiltjMGP_NODShiLtJ_P008758237.309919.7661mus_musculus_nodshiltjMGP_NODShiLtJ_P005963133.649817.827
MGP_NODShiLtJ_G0026846mus_musculus_nodshiltjMGP_NODShiLtJ_P005776743.91323.0435mus_musculus_nodshiltjMGP_NODShiLtJ_P005963131.96216.7722

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_NODShiLtJ_G0026846mus_musculus_nodshiltjMGP_NODShiLtJ_P005963199.050699.0506mus_musculus_129s1svimjMGP_129S1SvImJ_P005993699.787599.7875
MGP_NODShiLtJ_G0026846mus_musculus_nodshiltjMGP_NODShiLtJ_P005963192.405192.4051mus_caroliMGP_CAROLIEiJ_P005679999.319799.3197
MGP_NODShiLtJ_G0026846mus_musculus_nodshiltjMGP_NODShiLtJ_P005963199.050699.0506mus_musculus_balbcjMGP_BALBcJ_P005989799.787599.7875
MGP_NODShiLtJ_G0026846mus_musculus_nodshiltjMGP_NODShiLtJ_P005963199.050699.0506mus_musculus_ajMGP_AJ_P005997099.787599.7875
MGP_NODShiLtJ_G0026846mus_musculus_nodshiltjMGP_NODShiLtJ_P005963199.050699.0506mus_musculus_c3hhejMGP_C3HHeJ_P005958699.787599.7875
MGP_NODShiLtJ_G0026846mus_musculus_nodshiltjMGP_NODShiLtJ_P005963199.050699.0506mus_musculus_cbajMGP_CBAJ_P005955899.787599.7875
MGP_NODShiLtJ_G0026846mus_musculus_nodshiltjMGP_NODShiLtJ_P005963199.050699.0506mus_musculus_fvbnjMGP_FVBNJ_P005964699.787599.7875
MGP_NODShiLtJ_G0026846mus_musculus_nodshiltjMGP_NODShiLtJ_P005963199.050699.0506mus_musculus_c57bl6njMGP_C57BL6NJ_P006036299.787599.7875
MGP_NODShiLtJ_G0026846mus_musculus_nodshiltjMGP_NODShiLtJ_P005963199.050699.0506mus_musculus_nzohlltjMGP_NZOHlLtJ_P006055299.787599.7875
MGP_NODShiLtJ_G0026846mus_musculus_nodshiltjMGP_NODShiLtJ_P005963199.050699.0506mus_musculusENSMUSP0000000252999.787599.7875
MGP_NODShiLtJ_G0026846mus_musculus_nodshiltjMGP_NODShiLtJ_P005963199.050699.0506mus_musculus_casteijMGP_CASTEiJ_P005987999.787599.7875
MGP_NODShiLtJ_G0026846mus_musculus_nodshiltjMGP_NODShiLtJ_P005963199.050699.0506mus_musculus_akrjMGP_AKRJ_P005990599.787599.7875
MGP_NODShiLtJ_G0026846mus_musculus_nodshiltjMGP_NODShiLtJ_P005963199.050699.0506mus_musculus_wsbeijMGP_WSBEiJ_P005885899.787599.7875
MGP_NODShiLtJ_G0026846mus_musculus_nodshiltjMGP_NODShiLtJ_P005963197.468497.0464rattus_norvegicusENSRNOP0000009731792.031991.6335
MGP_NODShiLtJ_G0026846mus_musculus_nodshiltjMGP_NODShiLtJ_P005963199.050699.0506mus_musculus_dba2jMGP_DBA2J_P005966599.787599.7875
MGP_NODShiLtJ_G0026846mus_musculus_nodshiltjMGP_NODShiLtJ_P005963199.050699.0506mus_musculus_pwkphjMGP_PWKPhJ_P005944799.787599.7875
MGP_NODShiLtJ_G0026846mus_musculus_nodshiltjMGP_NODShiLtJ_P005963199.050698.9451mus_pahariMGP_PahariEiJ_P006782499.787599.6812
MGP_NODShiLtJ_G0026846mus_musculus_nodshiltjMGP_NODShiLtJ_P005963187.341887.3418mus_musculus_lpjMGP_LPJ_P005977599.75999.759
MGP_NODShiLtJ_G0026846mus_musculus_nodshiltjMGP_NODShiLtJ_P005963199.050699.0506mus_spicilegusENSMSIP0000001428799.787599.7875
MGP_NODShiLtJ_G0026846mus_musculus_nodshiltjMGP_NODShiLtJ_P005963199.050699.0506mus_spretusMGP_SPRETEiJ_P005903399.787599.7875

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression