RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	MGP_NODShiLtJ_G0025424	Gene ID		Accession	-
Symbol	Fubp3	Alias	-	Full Name	far upstream element (FUSE) binding protein 3
Status	Confidence	Length	44702 bases	Strand	Plus strand
Position	2 : 31730127 - 31774828	RNA binding domain	KH_2 , DUF1897 , KH_1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
MGP_NODShiLtJ_P0053667	KH_2	PF07650	1.6e-20	1
MGP_NODShiLtJ_P0053667	KH_1	PF00013	2e-68	2
MGP_NODShiLtJ_P0053667	KH_1	PF00013	2e-68	3
MGP_NODShiLtJ_P0053667	KH_1	PF00013	2e-68	4
MGP_NODShiLtJ_P0053667	KH_1	PF00013	2e-68	5
MGP_NODShiLtJ_P0053671	KH_2	PF07650	1.6e-20	1
MGP_NODShiLtJ_P0053671	KH_1	PF00013	2.1e-68	2
MGP_NODShiLtJ_P0053671	KH_1	PF00013	2.1e-68	3
MGP_NODShiLtJ_P0053671	KH_1	PF00013	2.1e-68	4
MGP_NODShiLtJ_P0053671	KH_1	PF00013	2.1e-68	5
MGP_NODShiLtJ_P0053673	KH_2	PF07650	9.1e-13	1
MGP_NODShiLtJ_P0053673	KH_1	PF00013	1.3e-32	2
MGP_NODShiLtJ_P0053673	KH_1	PF00013	1.3e-32	3
MGP_NODShiLtJ_P0053674	KH_2	PF07650	1.3e-05	1
MGP_NODShiLtJ_P0053674	KH_1	PF00013	8.4e-19	2
MGP_NODShiLtJ_P0053675	DUF1897	PF09005	1.8e-08	1
MGP_NODShiLtJ_P0053676	DUF1897	PF09005	0.00018	1
MGP_NODShiLtJ_P0053670	KH_1	PF00013	1.1e-10	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
Fubp3-001	MGP_NODShiLtJ_T0053667	3138	569aa	MGP_NODShiLtJ_P0053667"/note="transcript_id=MGP_NODShiLtJ_T0053667
-	MGP_NODShiLtJ_T0053668	372	97aa	MGP_NODShiLtJ_P0053668"/note="transcript_id=MGP_NODShiLtJ_T0053668
-	MGP_NODShiLtJ_T0053669	1909	No protein	-
-	MGP_NODShiLtJ_T0053670	425	123aa	MGP_NODShiLtJ_P0053670"/note="transcript_id=MGP_NODShiLtJ_T0053670
-	MGP_NODShiLtJ_T0053671	3516	575aa	MGP_NODShiLtJ_P0053671"/note="transcript_id=MGP_NODShiLtJ_T0053671
-	MGP_NODShiLtJ_T0053672	453	83aa	MGP_NODShiLtJ_P0053672"/note="transcript_id=MGP_NODShiLtJ_T0053672
-	MGP_NODShiLtJ_T0053673	908	191aa	MGP_NODShiLtJ_P0053673"/note="transcript_id=MGP_NODShiLtJ_T0053673
-	MGP_NODShiLtJ_T0053674	1073	263aa	MGP_NODShiLtJ_P0053674"/note="transcript_id=MGP_NODShiLtJ_T0053674
-	MGP_NODShiLtJ_T0053675	711	103aa	MGP_NODShiLtJ_P0053675"/note="transcript_id=MGP_NODShiLtJ_T0053675
-	MGP_NODShiLtJ_T0053676	437	52aa	MGP_NODShiLtJ_P0053676"/note="transcript_id=MGP_NODShiLtJ_T0053676
-	MGP_NODShiLtJ_T0053677	2210	No protein	-

Gene Model

Click here to download MGP_NODShiLtJ_G0025424's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download MGP_NODShiLtJ_G0025424's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_NODShiLtJ_G0025424	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0078228	39.3258	22.7528	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0053671	24.3478	14.087
MGP_NODShiLtJ_G0025424	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0034542	31.1637	15.1874	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0053671	27.4783	13.3913
MGP_NODShiLtJ_G0025424	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0025651	36.9272	20.2156	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0053671	23.8261	13.0435
MGP_NODShiLtJ_G0025424	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0077112	28.6701	15.3713	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0053671	28.8696	15.4783
MGP_NODShiLtJ_G0025424	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0093682	34.9876	20.8437	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0053671	24.5217	14.6087
MGP_NODShiLtJ_G0025424	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0084479	32.5103	16.8724	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0053671	13.7391	7.13043
MGP_NODShiLtJ_G0025424	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0037005	30.2428	17.66	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0053671	23.8261	13.913
MGP_NODShiLtJ_G0025424	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0048020	51.6043	40.7754	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0053671	67.1304	53.0435
MGP_NODShiLtJ_G0025424	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0081528	31.3008	15.6504	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0053671	26.7826	13.3913
MGP_NODShiLtJ_G0025424	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0081527	30.83	15.6126	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0053671	27.1304	13.7391
MGP_NODShiLtJ_G0025424	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0043531	28.8851	15.0338	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0053671	29.7391	15.4783
MGP_NODShiLtJ_G0025424	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0063992	61.9266	52.2936	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0053671	70.4348	59.4783
MGP_NODShiLtJ_G0025424	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0031626	29.1161	14.9047	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0053671	29.2174	14.9565
MGP_NODShiLtJ_G0025424	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0042481	37.8453	21.547	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0053671	23.8261	13.5652

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_NODShiLtJ_G0025424	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0053671	100	100	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0053977	100	100
MGP_NODShiLtJ_G0025424	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0053671	99.6522	99.6522	mus_caroli	MGP_CAROLIEiJ_P0050974	99.6522	99.6522
MGP_NODShiLtJ_G0025424	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0053671	100	100	mus_musculus_balbcj	MGP_BALBcJ_P0053935	100	100
MGP_NODShiLtJ_G0025424	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0053671	100	100	mus_musculus_aj	MGP_AJ_P0053991	100	100
MGP_NODShiLtJ_G0025424	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0053671	100	100	mus_musculus_c3hhej	MGP_C3HHeJ_P0053667	100	100
MGP_NODShiLtJ_G0025424	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0053671	100	100	mus_musculus_cbaj	MGP_CBAJ_P0053613	100	100
MGP_NODShiLtJ_G0025424	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0053671	100	100	mus_musculus_fvbnj	MGP_FVBNJ_P0053682	100	100
MGP_NODShiLtJ_G0025424	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0053671	100	100	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0054422	100	100
MGP_NODShiLtJ_G0025424	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0053671	100	100	mus_musculus_nzohlltj	MGP_NZOHlLtJ_P0054561	100	100
MGP_NODShiLtJ_G0025424	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0053671	100	100	mus_musculus	ENSMUSP00000053474	100	100
MGP_NODShiLtJ_G0025424	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0053671	100	100	mus_musculus_casteij	MGP_CASTEiJ_P0053835	100	100
MGP_NODShiLtJ_G0025424	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0053671	100	100	mus_musculus_akrj	MGP_AKRJ_P0053945	100	100
MGP_NODShiLtJ_G0025424	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0053671	100	100	mus_musculus_wsbeij	MGP_WSBEiJ_P0052940	100	100
MGP_NODShiLtJ_G0025424	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0053671	97.2174	96.5217	rattus_norvegicus	ENSRNOP00000021871	98.2425	97.5395
MGP_NODShiLtJ_G0025424	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0053671	100	100	mus_musculus_dba2j	MGP_DBA2J_P0053721	100	100
MGP_NODShiLtJ_G0025424	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0053671	99.8261	99.8261	mus_musculus_pwkphj	MGP_PWKPhJ_P0053439	99.8261	99.8261
MGP_NODShiLtJ_G0025424	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0053671	99.8261	99.4783	mus_pahari	MGP_PahariEiJ_P0061986	99.8261	99.4783
MGP_NODShiLtJ_G0025424	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0053671	100	100	mus_musculus_lpj	MGP_LPJ_P0053827	100	100
MGP_NODShiLtJ_G0025424	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0053671	98.4348	98.087	mus_spicilegus	ENSMSIP00000023441	99.4728	99.1213
MGP_NODShiLtJ_G0025424	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0053671	99.8261	99.8261	mus_spretus	MGP_SPRETEiJ_P0053011	99.8261	99.8261

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression