Description

Ensembl ID MGP_NODShiLtJ_G0023469 Gene ID Accession -
Symbol Vars2 Alias - Full Name valyl-tRNA synthetase 2, mitochondrial
Status Confidence Length 11435 bases Strand Minus strand
Position 17 : 37653801 - 37665235 RNA binding domain tRNA-synt_1g , tRNA-synt_1 , Anticodon_1
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_NODShiLtJ_P0047115 tRNA-synt_1g PF09334 6.5e-15 1
MGP_NODShiLtJ_P0047115 tRNA-synt_1 PF00133 1e-180 2
MGP_NODShiLtJ_P0047115 Anticodon_1 PF08264 2e-30 3
MGP_NODShiLtJ_P0047122 tRNA-synt_1g PF09334 8.2e-05 1
MGP_NODShiLtJ_P0047122 tRNA-synt_1 PF00133 1e-27 2
MGP_NODShiLtJ_P0047118 tRNA-synt_1g PF09334 0.00039 1
MGP_NODShiLtJ_P0047118 tRNA-synt_1 PF00133 1.5e-47 2
MGP_NODShiLtJ_P0047117 tRNA-synt_1 PF00133 6.2e-104 1
MGP_NODShiLtJ_P0047117 Anticodon_1 PF08264 1e-24 2

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Vars2-001 MGP_NODShiLtJ_T0047115 4422 1060aa MGP_NODShiLtJ_P0047115"/note="transcript_id=MGP_NODShiLtJ_T0047115
- MGP_NODShiLtJ_T0047116 3800 No protein -
- MGP_NODShiLtJ_T0047117 2507 580aa MGP_NODShiLtJ_P0047117"/note="transcript_id=MGP_NODShiLtJ_T0047117
- MGP_NODShiLtJ_T0047118 1972 214aa MGP_NODShiLtJ_P0047118"/note="transcript_id=MGP_NODShiLtJ_T0047118
- MGP_NODShiLtJ_T0047119 722 No protein -
- MGP_NODShiLtJ_T0047120 603 No protein -
- MGP_NODShiLtJ_T0047121 319 No protein -
- MGP_NODShiLtJ_T0047122 832 112aa MGP_NODShiLtJ_P0047122"/note="transcript_id=MGP_NODShiLtJ_T0047122
- MGP_NODShiLtJ_T0047123 708 No protein -
- MGP_NODShiLtJ_T0047124 618 No protein -
- MGP_NODShiLtJ_T0047125 786 No protein -
- MGP_NODShiLtJ_T0047126 718 75aa MGP_NODShiLtJ_P0047126"/note="transcript_id=MGP_NODShiLtJ_T0047126

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_NODShiLtJ_G0023469mus_musculus_nodshiltjMGP_NODShiLtJ_P004695753.822242.1217mus_musculus_nodshiltjMGP_NODShiLtJ_P004711565.094350.9434
MGP_NODShiLtJ_G0023469mus_musculus_nodshiltjMGP_NODShiLtJ_P001969533.276519.4539mus_musculus_nodshiltjMGP_NODShiLtJ_P004711518.396210.7547
MGP_NODShiLtJ_G0023469mus_musculus_nodshiltjMGP_NODShiLtJ_P002712828.02215.2747mus_musculus_nodshiltjMGP_NODShiLtJ_P004711524.056613.1132
MGP_NODShiLtJ_G0023469mus_musculus_nodshiltjMGP_NODShiLtJ_P004924827.843814.1766mus_musculus_nodshiltjMGP_NODShiLtJ_P004711530.943415.7547
MGP_NODShiLtJ_G0023469mus_musculus_nodshiltjMGP_NODShiLtJ_P002387536.264821.7391mus_musculus_nodshiltjMGP_NODShiLtJ_P004711534.622620.7547
MGP_NODShiLtJ_G0023469mus_musculus_nodshiltjMGP_NODShiLtJ_P003670229.160116.878mus_musculus_nodshiltjMGP_NODShiLtJ_P004711534.71720.0943
MGP_NODShiLtJ_G0023469mus_musculus_nodshiltjMGP_NODShiLtJ_P009488830.931318.6253mus_musculus_nodshiltjMGP_NODShiLtJ_P004711526.320815.8491

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_NODShiLtJ_G0023469mus_musculus_nodshiltjMGP_NODShiLtJ_P004711510099.9057mus_musculus_129s1svimjMGP_129S1SvImJ_P004744110099.9057
MGP_NODShiLtJ_G0023469mus_musculus_nodshiltjMGP_NODShiLtJ_P004711599.245398.5849mus_caroliMGP_CAROLIEiJ_P004452799.245398.5849
MGP_NODShiLtJ_G0023469mus_musculus_nodshiltjMGP_NODShiLtJ_P004711599.528399.2453mus_musculus_balbcjMGP_BALBcJ_P004737899.528399.2453
MGP_NODShiLtJ_G0023469mus_musculus_nodshiltjMGP_NODShiLtJ_P004711599.528399.2453mus_musculus_ajMGP_AJ_P004742299.528399.2453
MGP_NODShiLtJ_G0023469mus_musculus_nodshiltjMGP_NODShiLtJ_P0047115100100mus_musculus_c3hhejMGP_C3HHeJ_P0047117100100
MGP_NODShiLtJ_G0023469mus_musculus_nodshiltjMGP_NODShiLtJ_P0047115100100mus_musculus_cbajMGP_CBAJ_P0047053100100
MGP_NODShiLtJ_G0023469mus_musculus_nodshiltjMGP_NODShiLtJ_P0047115100100mus_musculus_fvbnjMGP_FVBNJ_P0047116100100
MGP_NODShiLtJ_G0023469mus_musculus_nodshiltjMGP_NODShiLtJ_P004711599.71799.5283mus_musculus_c57bl6njMGP_C57BL6NJ_P004786299.71799.5283
MGP_NODShiLtJ_G0023469mus_musculus_nodshiltjMGP_NODShiLtJ_P004711510099.9057mus_musculus_nzohlltjMGP_NZOHlLtJ_P004795410099.9057
MGP_NODShiLtJ_G0023469mus_musculus_nodshiltjMGP_NODShiLtJ_P004711599.71799.5283mus_musculusENSMUSP0000004791799.71799.5283
MGP_NODShiLtJ_G0023469mus_musculus_nodshiltjMGP_NODShiLtJ_P004711599.811399.6226mus_musculus_casteijMGP_CASTEiJ_P004718699.811399.6226
MGP_NODShiLtJ_G0023469mus_musculus_nodshiltjMGP_NODShiLtJ_P0047115100100mus_musculus_akrjMGP_AKRJ_P0047376100100
MGP_NODShiLtJ_G0023469mus_musculus_nodshiltjMGP_NODShiLtJ_P004711599.811399.717mus_musculus_wsbeijMGP_WSBEiJ_P004645099.811399.717
MGP_NODShiLtJ_G0023469mus_musculus_nodshiltjMGP_NODShiLtJ_P004711599.528399.2453mus_musculus_dba2jMGP_DBA2J_P004715499.528399.2453
MGP_NODShiLtJ_G0023469mus_musculus_nodshiltjMGP_NODShiLtJ_P004711599.622699.434mus_musculus_pwkphjMGP_PWKPhJ_P004677999.622699.434
MGP_NODShiLtJ_G0023469mus_musculus_nodshiltjMGP_NODShiLtJ_P004711598.490697.3585mus_pahariMGP_PahariEiJ_P004406498.490697.3585
MGP_NODShiLtJ_G0023469mus_musculus_nodshiltjMGP_NODShiLtJ_P004711510099.9057mus_musculus_lpjMGP_LPJ_P004726210099.9057
MGP_NODShiLtJ_G0023469mus_musculus_nodshiltjMGP_NODShiLtJ_P004711599.056698.7736mus_spicilegusENSMSIP0000001728999.056698.7736
MGP_NODShiLtJ_G0023469mus_musculus_nodshiltjMGP_NODShiLtJ_P004711599.245398.7736mus_spretusMGP_SPRETEiJ_P004643199.245398.7736

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression