Description

Ensembl ID MGP_NODShiLtJ_G0023427 Gene ID Accession -
Symbol Vars Alias - Full Name valyl-tRNA synthetase
Status Confidence Length 15143 bases Strand Plus strand
Position 17 : 36915912 - 36931054 RNA binding domain tRNA-synt_1g , tRNA-synt_1 , Anticodon_1
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_NODShiLtJ_P0046956 tRNA-synt_1g PF09334 7.9e-11 1
MGP_NODShiLtJ_P0046956 tRNA-synt_1 PF00133 3.5e-201 2
MGP_NODShiLtJ_P0046956 Anticodon_1 PF08264 3.6e-32 3
MGP_NODShiLtJ_P0046957 tRNA-synt_1g PF09334 8.5e-11 1
MGP_NODShiLtJ_P0046957 tRNA-synt_1 PF00133 3.7e-201 2
MGP_NODShiLtJ_P0046957 Anticodon_1 PF08264 3.8e-32 3

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Vars-001 MGP_NODShiLtJ_T0046956 4137 1263aa MGP_NODShiLtJ_P0046956"/note="transcript_id=MGP_NODShiLtJ_T0046956
- MGP_NODShiLtJ_T0046957 4060 1282aa MGP_NODShiLtJ_P0046957"/note="transcript_id=MGP_NODShiLtJ_T0046957
- MGP_NODShiLtJ_T0046958 819 230aa MGP_NODShiLtJ_P0046958"/note="transcript_id=MGP_NODShiLtJ_T0046958
- MGP_NODShiLtJ_T0046959 423 125aa MGP_NODShiLtJ_P0046959"/note="transcript_id=MGP_NODShiLtJ_T0046959
- MGP_NODShiLtJ_T0046960 3731 No protein -
- MGP_NODShiLtJ_T0046961 475 No protein -
- MGP_NODShiLtJ_T0046962 347 No protein -
- MGP_NODShiLtJ_T0046963 746 No protein -
- MGP_NODShiLtJ_T0046964 557 No protein -
- MGP_NODShiLtJ_T0046965 803 No protein -
- MGP_NODShiLtJ_T0046966 388 129aa MGP_NODShiLtJ_P0046966"/note="transcript_id=MGP_NODShiLtJ_T0046966
- MGP_NODShiLtJ_T0046967 744 No protein -
- MGP_NODShiLtJ_T0046968 838 No protein -

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_NODShiLtJ_G0023427mus_musculus_nodshiltjMGP_NODShiLtJ_P001969533.105819.1126mus_musculus_nodshiltjMGP_NODShiLtJ_P004695715.13268.73635
MGP_NODShiLtJ_G0023427mus_musculus_nodshiltjMGP_NODShiLtJ_P002712834.395619.011mus_musculus_nodshiltjMGP_NODShiLtJ_P004695724.41513.4945
MGP_NODShiLtJ_G0023427mus_musculus_nodshiltjMGP_NODShiLtJ_P004924827.589114.1766mus_musculus_nodshiltjMGP_NODShiLtJ_P004695725.35113.0265
MGP_NODShiLtJ_G0023427mus_musculus_nodshiltjMGP_NODShiLtJ_P002387538.043523.3202mus_musculus_nodshiltjMGP_NODShiLtJ_P004695730.031218.4087
MGP_NODShiLtJ_G0023427mus_musculus_nodshiltjMGP_NODShiLtJ_P004711565.094350.9434mus_musculus_nodshiltjMGP_NODShiLtJ_P004695753.822242.1217
MGP_NODShiLtJ_G0023427mus_musculus_nodshiltjMGP_NODShiLtJ_P003670230.427917.2742mus_musculus_nodshiltjMGP_NODShiLtJ_P004695729.953217.0047
MGP_NODShiLtJ_G0023427mus_musculus_nodshiltjMGP_NODShiLtJ_P009488832.261618.4035mus_musculus_nodshiltjMGP_NODShiLtJ_P004695722.698912.9485

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_NODShiLtJ_G0023427mus_musculus_nodshiltjMGP_NODShiLtJ_P004695799.68899.61mus_musculus_129s1svimjMGP_129S1SvImJ_P004727810099.9218
MGP_NODShiLtJ_G0023427mus_musculus_nodshiltjMGP_NODShiLtJ_P004695797.113996.6459mus_caroliMGP_CAROLIEiJ_P004437698.574898.0998
MGP_NODShiLtJ_G0023427mus_musculus_nodshiltjMGP_NODShiLtJ_P004695799.68899.61mus_musculus_balbcjMGP_BALBcJ_P004722510099.9218
MGP_NODShiLtJ_G0023427mus_musculus_nodshiltjMGP_NODShiLtJ_P004695799.68899.61mus_musculus_ajMGP_AJ_P004726710099.9218
MGP_NODShiLtJ_G0023427mus_musculus_nodshiltjMGP_NODShiLtJ_P004695799.68899.61mus_musculus_c3hhejMGP_C3HHeJ_P004695110099.9218
MGP_NODShiLtJ_G0023427mus_musculus_nodshiltjMGP_NODShiLtJ_P004695799.68899.61mus_musculus_cbajMGP_CBAJ_P004688510099.9218
MGP_NODShiLtJ_G0023427mus_musculus_nodshiltjMGP_NODShiLtJ_P0046957100100mus_musculus_fvbnjMGP_FVBNJ_P0046957100100
MGP_NODShiLtJ_G0023427mus_musculus_nodshiltjMGP_NODShiLtJ_P004695799.68899.61mus_musculus_c57bl6njMGP_C57BL6NJ_P004769710099.9218
MGP_NODShiLtJ_G0023427mus_musculus_nodshiltjMGP_NODShiLtJ_P004695799.6199.532mus_musculus_nzohlltjMGP_NZOHlLtJ_P004779899.921899.8435
MGP_NODShiLtJ_G0023427mus_musculus_nodshiltjMGP_NODShiLtJ_P004695799.68899.61mus_musculusENSMUSP0000013399410099.9218
MGP_NODShiLtJ_G0023427mus_musculus_nodshiltjMGP_NODShiLtJ_P004695799.68899.61mus_musculus_casteijMGP_CASTEiJ_P004703310099.9218
MGP_NODShiLtJ_G0023427mus_musculus_nodshiltjMGP_NODShiLtJ_P004695799.68899.61mus_musculus_akrjMGP_AKRJ_P004721510099.9218
MGP_NODShiLtJ_G0023427mus_musculus_nodshiltjMGP_NODShiLtJ_P0046957100100mus_musculus_wsbeijMGP_WSBEiJ_P0046295100100
MGP_NODShiLtJ_G0023427mus_musculus_nodshiltjMGP_NODShiLtJ_P004695796.177895.1638rattus_norvegicusENSRNOP0000000116097.547596.519
MGP_NODShiLtJ_G0023427mus_musculus_nodshiltjMGP_NODShiLtJ_P004695799.68899.61mus_musculus_dba2jMGP_DBA2J_P004700110099.9218
MGP_NODShiLtJ_G0023427mus_musculus_nodshiltjMGP_NODShiLtJ_P004695799.68899.61mus_musculus_pwkphjMGP_PWKPhJ_P004662310099.9218
MGP_NODShiLtJ_G0023427mus_musculus_nodshiltjMGP_NODShiLtJ_P004695796.645996.0218mus_pahariMGP_PahariEiJ_P004391698.099897.4663
MGP_NODShiLtJ_G0023427mus_musculus_nodshiltjMGP_NODShiLtJ_P004695799.68899.61mus_musculus_lpjMGP_LPJ_P004710110099.9218
MGP_NODShiLtJ_G0023427mus_musculus_nodshiltjMGP_NODShiLtJ_P004695791.263690.7956mus_spicilegusENSMSIP0000001893498.734298.2279
MGP_NODShiLtJ_G0023427mus_musculus_nodshiltjMGP_NODShiLtJ_P0046957100100mus_spretusMGP_SPRETEiJ_P0046274100100

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression