RBPWorld - a comprehensive database of RNA Binding Proteins

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Description

Ensembl ID	MGP_NODShiLtJ_G0020532	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	18513 bases	Strand	Plus strand
Position	13 : 70670382 - 70688894	RNA binding domain	RAM
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
MGP_NODShiLtJ_P0037177	RAM	PF15320	2.2e-16	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	MGP_NODShiLtJ_T0037177	1400	134aa	MGP_NODShiLtJ_P0037177"/note="transcript_id=MGP_NODShiLtJ_T0037177

Gene Model

Click here to download MGP_NODShiLtJ_G0020532's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download MGP_NODShiLtJ_G0020532's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_NODShiLtJ_G0020532	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0037178	45.8647	42.1053	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0037177	45.5224	41.791

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_NODShiLtJ_G0020532	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0037177	35.0746	33.5821	mus_caroli	MGP_CAROLIEiJ_P0080478	71.2121	68.1818
MGP_NODShiLtJ_G0020532	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0037177	76.8657	76.8657	mus_musculus_balbcj	MGP_BALBcJ_P0084813	88.0342	88.0342
MGP_NODShiLtJ_G0020532	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0037177	32.0896	32.0896	mus_musculus_aj	MGP_AJ_P0037394	41.7476	41.7476
MGP_NODShiLtJ_G0020532	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0037177	32.0896	32.0896	mus_musculus_aj	MGP_AJ_P0037392	41.7476	41.7476
MGP_NODShiLtJ_G0020532	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0037177	93.2836	93.2836	mus_musculus_c3hhej	MGP_C3HHeJ_P0084387	88.0282	88.0282
MGP_NODShiLtJ_G0020532	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0037177	46.2687	40.2985	rattus_norvegicus	ENSRNOP00000026385	52.1008	45.3782
MGP_NODShiLtJ_G0020532	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0037177	37.3134	35.0746	mus_pahari	MGP_PahariEiJ_P0017330	66.6667	62.6667
MGP_NODShiLtJ_G0020532	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0037177	55.9701	53.7313	mus_spretus	MGP_SPRETEiJ_P0036426	75	72

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression