RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	MGP_NODShiLtJ_G0019099	Gene ID		Accession	-
Symbol	Eftud2	Alias	-	Full Name	elongation factor Tu GTP binding domain containing 2
Status	Confidence	Length	44487 bases	Strand	Minus strand
Position	11 : 113119102 - 113163588	RNA binding domain	GTP_EFTU , EFG_IV , GTP_EFTU_D2
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
MGP_NODShiLtJ_P0032593	GTP_EFTU	PF00009	1.9e-45	1
MGP_NODShiLtJ_P0032593	EFG_IV	PF03764	1.2e-22	2
MGP_NODShiLtJ_P0032593	GTP_EFTU_D2	PF03144	2.2e-12	3
MGP_NODShiLtJ_P0032594	GTP_EFTU	PF00009	1.9e-45	1
MGP_NODShiLtJ_P0032594	EFG_IV	PF03764	1.2e-22	2
MGP_NODShiLtJ_P0032594	GTP_EFTU_D2	PF03144	2.2e-12	3
MGP_NODShiLtJ_P0032596	GTP_EFTU	PF00009	9.4e-38	1
MGP_NODShiLtJ_P0032596	EFG_IV	PF03764	1.1e-22	2
MGP_NODShiLtJ_P0032596	GTP_EFTU_D2	PF03144	2.2e-12	3
MGP_NODShiLtJ_P0032597	EFG_IV	PF03764	1.4e-14	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
Eftud2-001	MGP_NODShiLtJ_T0032593	3324	972aa	MGP_NODShiLtJ_P0032593"/note="transcript_id=MGP_NODShiLtJ_T0032593
-	MGP_NODShiLtJ_T0032594	3342	972aa	MGP_NODShiLtJ_P0032594"/note="transcript_id=MGP_NODShiLtJ_T0032594
-	MGP_NODShiLtJ_T0032595	397	97aa	MGP_NODShiLtJ_P0032595"/note="transcript_id=MGP_NODShiLtJ_T0032595
-	MGP_NODShiLtJ_T0032596	2889	962aa	MGP_NODShiLtJ_P0032596"/note="transcript_id=MGP_NODShiLtJ_T0032596
-	MGP_NODShiLtJ_T0032597	567	84aa	MGP_NODShiLtJ_P0032597"/note="transcript_id=MGP_NODShiLtJ_T0032597
-	MGP_NODShiLtJ_T0032598	631	No protein	-
-	MGP_NODShiLtJ_T0032599	934	No protein	-
-	MGP_NODShiLtJ_T0032600	629	No protein	-
-	MGP_NODShiLtJ_T0032601	679	30aa	MGP_NODShiLtJ_P0032601"/note="transcript_id=MGP_NODShiLtJ_T0032601
-	MGP_NODShiLtJ_T0032602	1320	No protein	-
-	MGP_NODShiLtJ_T0032603	3225	No protein	-
-	MGP_NODShiLtJ_T0032604	581	No protein	-
-	MGP_NODShiLtJ_T0032605	796	No protein	-

Gene Model

Click here to download MGP_NODShiLtJ_G0019099's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download MGP_NODShiLtJ_G0019099's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_NODShiLtJ_G0019099	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0059508	29.5896	16.8467	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0032594	14.0947	8.02469
MGP_NODShiLtJ_G0019099	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0078367	29.5026	15.4374	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0032594	17.6955	9.25926
MGP_NODShiLtJ_G0019099	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0028135	24.8968	12.6547	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0032594	18.6214	9.46502
MGP_NODShiLtJ_G0019099	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0071670	30.722	17.5115	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0032594	20.5761	11.7284
MGP_NODShiLtJ_G0019099	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0096309	28.8136	14.4068	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0032594	13.9918	6.99588
MGP_NODShiLtJ_G0019099	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0096333	24.3671	12.0253	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0032594	15.8436	7.81893
MGP_NODShiLtJ_G0019099	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0084458	39.7516	23.5138	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0032594	46.0905	27.2634
MGP_NODShiLtJ_G0019099	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0037638	34.4031	18.3569	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0032594	27.572	14.7119
MGP_NODShiLtJ_G0019099	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0019263	17.1053	7.97697	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0032594	21.3992	9.97942
MGP_NODShiLtJ_G0019099	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0041434	24.4012	11.3772	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0032594	16.7695	7.81893
MGP_NODShiLtJ_G0019099	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0060793	34.3542	19.8402	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0032594	26.5432	15.3292
MGP_NODShiLtJ_G0019099	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0026198	54.0366	36.3832	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0032594	51.6461	34.7737
MGP_NODShiLtJ_G0019099	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0047584	24.8344	11.0927	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0032594	15.4321	6.893
MGP_NODShiLtJ_G0019099	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0086093	22.7113	13.5563	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0032594	13.2716	7.92181
MGP_NODShiLtJ_G0019099	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0086094	24.1379	14.3678	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0032594	12.963	7.71605
MGP_NODShiLtJ_G0019099	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0042885	23.4811	11.6585	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0032594	14.7119	7.30453

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_NODShiLtJ_G0019099	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0032594	100	100	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0032826	100	100
MGP_NODShiLtJ_G0019099	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0032594	100	100	mus_caroli	MGP_CAROLIEiJ_P0030314	100	100
MGP_NODShiLtJ_G0019099	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0032594	100	100	mus_musculus_balbcj	MGP_BALBcJ_P0032759	100	100
MGP_NODShiLtJ_G0019099	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0032594	100	100	mus_musculus_aj	MGP_AJ_P0032768	100	100
MGP_NODShiLtJ_G0019099	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0032594	100	100	mus_musculus_c3hhej	MGP_C3HHeJ_P0032545	100	100
MGP_NODShiLtJ_G0019099	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0032594	100	100	mus_musculus_cbaj	MGP_CBAJ_P0032458	100	100
MGP_NODShiLtJ_G0019099	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0032594	100	100	mus_musculus_fvbnj	MGP_FVBNJ_P0032597	100	100
MGP_NODShiLtJ_G0019099	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0032594	100	100	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0033264	100	100
MGP_NODShiLtJ_G0019099	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0032594	100	100	mus_musculus_nzohlltj	MGP_NZOHlLtJ_P0033296	100	100
MGP_NODShiLtJ_G0019099	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0032594	100	100	mus_musculus	ENSMUSP00000021306	100	100
MGP_NODShiLtJ_G0019099	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0032594	100	99.8971	mus_musculus_casteij	MGP_CASTEiJ_P0032371	100	99.8971
MGP_NODShiLtJ_G0019099	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0032594	100	100	mus_musculus_akrj	MGP_AKRJ_P0032752	100	100
MGP_NODShiLtJ_G0019099	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0032594	100	100	mus_musculus_wsbeij	MGP_WSBEiJ_P0032014	100	100
MGP_NODShiLtJ_G0019099	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0032594	100	99.8971	rattus_norvegicus	ENSRNOP00000052049	100	99.8971
MGP_NODShiLtJ_G0019099	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0032594	100	100	mus_musculus_dba2j	MGP_DBA2J_P0032605	100	100
MGP_NODShiLtJ_G0019099	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0032594	100	100	mus_musculus_pwkphj	MGP_PWKPhJ_P0032071	100	100
MGP_NODShiLtJ_G0019099	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0032594	100	100	mus_pahari	MGP_PahariEiJ_P0037033	100	100
MGP_NODShiLtJ_G0019099	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0032594	100	100	mus_musculus_lpj	MGP_LPJ_P0032724	100	100
MGP_NODShiLtJ_G0019099	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0032594	97.9424	97.2222	mus_spicilegus	ENSMSIP00000033270	97.3415	96.6258
MGP_NODShiLtJ_G0019099	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0032594	100	100	mus_spretus	MGP_SPRETEiJ_P0031755	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression