Description

Ensembl ID MGP_LPJ_G0033610 Gene ID Accession -
Symbol Upf1 Alias - Full Name UPF1 regulator of nonsense transcripts homolog (yeast)
Status Confidence Length 22463 bases Strand Minus strand
Position 8 : 70622115 - 70644577 RNA binding domain ResIII , UPF1_1B_dom , UPF1_Zn_bind
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_LPJ_P0088948 ResIII PF04851 4.4e-05 1
MGP_LPJ_P0088948 UPF1_1B_dom PF18141 3.3e-32 2
MGP_LPJ_P0088948 UPF1_Zn_bind PF09416 3.8e-77 3
MGP_LPJ_P0088947 ResIII PF04851 4.7e-05 1
MGP_LPJ_P0088947 UPF1_1B_dom PF18141 1e-28 2
MGP_LPJ_P0088947 UPF1_Zn_bind PF09416 3.9e-77 3

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Upf1-001 MGP_LPJ_T0088947 4597 1124aa MGP_LPJ_P0088947"/note="transcript_id=MGP_LPJ_T0088947
- MGP_LPJ_T0088948 3442 1113aa MGP_LPJ_P0088948"/note="transcript_id=MGP_LPJ_T0088948

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_LPJ_G0033610mus_musculus_lpjMGP_LPJ_P005658418.163410.1958mus_musculus_lpjMGP_LPJ_P008894723.932413.4342
MGP_LPJ_G0033610mus_musculus_lpjMGP_LPJ_P006353324.312414.9065mus_musculus_lpjMGP_LPJ_P008894739.323824.1103
MGP_LPJ_G0033610mus_musculus_lpjMGP_LPJ_P005346716.32659.41043mus_musculus_lpjMGP_LPJ_P008894738.434222.153
MGP_LPJ_G0033610mus_musculus_lpjMGP_LPJ_P003306315.62348.39695mus_musculus_lpjMGP_LPJ_P008894727.313214.6797
MGP_LPJ_G0033610mus_musculus_lpjMGP_LPJ_P006281023.026913.2776mus_musculus_lpjMGP_LPJ_P008894722.064112.7224
MGP_LPJ_G0033610mus_musculus_lpjMGP_LPJ_P005011239.879225.9819mus_musculus_lpjMGP_LPJ_P008894735.231322.9537
MGP_LPJ_G0033610mus_musculus_lpjMGP_LPJ_P009586131.779716.9492mus_musculus_lpjMGP_LPJ_P00889476.67263.55872
MGP_LPJ_G0033610mus_musculus_lpjMGP_LPJ_P009585631.645618.3544mus_musculus_lpjMGP_LPJ_P00889474.44842.58007
MGP_LPJ_G0033610mus_musculus_lpjMGP_LPJ_P005922815.87229.27187mus_musculus_lpjMGP_LPJ_P008894726.957315.7473
MGP_LPJ_G0033610mus_musculus_lpjMGP_LPJ_P004197522.843112.9827mus_musculus_lpjMGP_LPJ_P008894724.733114.0569
MGP_LPJ_G0033610mus_musculus_lpjMGP_LPJ_P002539626.459515.1601mus_musculus_lpjMGP_LPJ_P00889472514.3238
MGP_LPJ_G0033610mus_musculus_lpjMGP_LPJ_P005966210.57245.92593mus_musculus_lpjMGP_LPJ_P008894727.935915.6584

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_LPJ_G0033610mus_musculus_lpjMGP_LPJ_P0088947100100mus_caroliMGP_CAROLIEiJ_P0084765100100
MGP_LPJ_G0033610mus_musculus_lpjMGP_LPJ_P0088947100100mus_musculus_balbcjMGP_BALBcJ_P0089217100100
MGP_LPJ_G0033610mus_musculus_lpjMGP_LPJ_P0088947100100mus_musculus_ajMGP_AJ_P0089275100100
MGP_LPJ_G0033610mus_musculus_lpjMGP_LPJ_P0088947100100mus_musculus_c57bl6njMGP_C57BL6NJ_P0089734100100
MGP_LPJ_G0033610mus_musculus_lpjMGP_LPJ_P0088947100100mus_musculus_cbajMGP_CBAJ_P0088730100100
MGP_LPJ_G0033610mus_musculus_lpjMGP_LPJ_P0088947100100mus_musculus_129s1svimjMGP_129S1SvImJ_P0089189100100
MGP_LPJ_G0033610mus_musculus_lpjMGP_LPJ_P0088947100100mus_musculus_c3hhejMGP_C3HHeJ_P0088779100100
MGP_LPJ_G0033610mus_musculus_lpjMGP_LPJ_P0088947100100mus_musculus_fvbnjMGP_FVBNJ_P0088759100100
MGP_LPJ_G0033610mus_musculus_lpjMGP_LPJ_P0088947100100mus_musculusENSMUSP00000075089100100
MGP_LPJ_G0033610mus_musculus_lpjMGP_LPJ_P0088947100100mus_musculus_akrjMGP_AKRJ_P0089205100100
MGP_LPJ_G0033610mus_musculus_lpjMGP_LPJ_P0088947100100mus_musculus_dba2jMGP_DBA2J_P0088922100100
MGP_LPJ_G0033610mus_musculus_lpjMGP_LPJ_P0088947100100mus_spretusMGP_SPRETEiJ_P0088267100100
MGP_LPJ_G0033610mus_musculus_lpjMGP_LPJ_P0088947100100mus_musculus_casteijMGP_CASTEiJ_P0089329100100
MGP_LPJ_G0033610mus_musculus_lpjMGP_LPJ_P0088947100100mus_musculus_nzohlltjMGP_NZOHlLtJ_P0090031100100
MGP_LPJ_G0033610mus_musculus_lpjMGP_LPJ_P0088947100100mus_pahariMGP_PahariEiJ_P0047646100100
MGP_LPJ_G0033610mus_musculus_lpjMGP_LPJ_P0088947100100mus_spicilegusENSMSIP00000038476100100
MGP_LPJ_G0033610mus_musculus_lpjMGP_LPJ_P0088947100100mus_musculus_nodshiltjMGP_NODShiLtJ_P0088793100100
MGP_LPJ_G0033610mus_musculus_lpjMGP_LPJ_P0088947100100mus_musculus_wsbeijMGP_WSBEiJ_P0087819100100
MGP_LPJ_G0033610mus_musculus_lpjMGP_LPJ_P008894710099.911rattus_norvegicusENSRNOP0000007590510099.911
MGP_LPJ_G0033610mus_musculus_lpjMGP_LPJ_P0088947100100mus_musculus_pwkphjMGP_PWKPhJ_P0088742100100

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression