RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | MGP_LPJ_G0031126 | Gene ID |
|
Accession |
- |
Symbol |
Apobec1 |
Alias |
- |
Full Name |
apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1 |
Status |
Confidence |
Length |
24863 bases |
Strand |
Minus strand |
Position |
6 : 125826378 - 125851240 |
RNA binding domain |
APOBEC_N , APOBEC_C |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
MGP_LPJ_P0079689 |
APOBEC_N |
PF08210 |
3.9e-33 |
1 |
MGP_LPJ_P0079689 |
APOBEC_C |
PF05240 |
8.3e-22 |
2 |
MGP_LPJ_P0079690 |
APOBEC_N |
PF08210 |
3.9e-33 |
1 |
MGP_LPJ_P0079690 |
APOBEC_C |
PF05240 |
8.3e-22 |
2 |
MGP_LPJ_P0079691 |
APOBEC_N |
PF08210 |
3.9e-33 |
1 |
MGP_LPJ_P0079691 |
APOBEC_C |
PF05240 |
8.3e-22 |
2 |
MGP_LPJ_P0079692 |
APOBEC_N |
PF08210 |
7e-19 |
1 |
MGP_LPJ_P0079693 |
APOBEC_N |
PF08210 |
1.4e-14 |
1 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
Apobec1-001 |
MGP_LPJ_T0079689 |
2265 |
229aa |
MGP_LPJ_P0079689"/note="transcript_id=MGP_LPJ_T0079689 |
- |
MGP_LPJ_T0079690 |
2072 |
229aa |
MGP_LPJ_P0079690"/note="transcript_id=MGP_LPJ_T0079690 |
- |
MGP_LPJ_T0079691 |
2127 |
229aa |
MGP_LPJ_P0079691"/note="transcript_id=MGP_LPJ_T0079691 |
- |
MGP_LPJ_T0079692 |
666 |
121aa |
MGP_LPJ_P0079692"/note="transcript_id=MGP_LPJ_T0079692 |
- |
MGP_LPJ_T0079693 |
775 |
113aa |
MGP_LPJ_P0079693"/note="transcript_id=MGP_LPJ_T0079693 |
- |
MGP_LPJ_T0079694 |
372 |
43aa |
MGP_LPJ_P0079694"/note="transcript_id=MGP_LPJ_T0079694 |
- |
MGP_LPJ_T0079695 |
360 |
25aa |
MGP_LPJ_P0079695"/note="transcript_id=MGP_LPJ_T0079695 |
- |
MGP_LPJ_T0079696 |
560 |
No protein |
- |
- |
MGP_LPJ_T0079697 |
520 |
No protein |
- |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_LPJ_G0031126 | mus_musculus_lpj | MGP_LPJ_P0047967 | 34.375 | 18.3036 | mus_musculus_lpj | MGP_LPJ_P0079689 | 33.6245 | 17.9039 |
MGP_LPJ_G0031126 | mus_musculus_lpj | MGP_LPJ_P0079687 | 39.899 | 28.2828 | mus_musculus_lpj | MGP_LPJ_P0079689 | 34.4978 | 24.4541 |
MGP_LPJ_G0031126 | mus_musculus_lpj | MGP_LPJ_P0041588 | 24.5455 | 15 | mus_musculus_lpj | MGP_LPJ_P0079689 | 47.1616 | 28.821 |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_LPJ_G0031126 | mus_musculus_lpj | MGP_LPJ_P0079689 | 27.0742 | 19.214 | mus_caroli | MGP_CAROLIEiJ_P0075904 | 34.6369 | 24.581 |
MGP_LPJ_G0031126 | mus_musculus_lpj | MGP_LPJ_P0079689 | 100 | 100 | mus_musculus_balbcj | MGP_BALBcJ_P0079920 | 100 | 100 |
MGP_LPJ_G0031126 | mus_musculus_lpj | MGP_LPJ_P0079689 | 100 | 100 | mus_musculus_aj | MGP_AJ_P0079974 | 100 | 100 |
MGP_LPJ_G0031126 | mus_musculus_lpj | MGP_LPJ_P0079689 | 100 | 100 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0080391 | 100 | 100 |
MGP_LPJ_G0031126 | mus_musculus_lpj | MGP_LPJ_P0079689 | 100 | 100 | mus_musculus_cbaj | MGP_CBAJ_P0079498 | 100 | 100 |
MGP_LPJ_G0031126 | mus_musculus_lpj | MGP_LPJ_P0079689 | 100 | 100 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0079913 | 100 | 100 |
MGP_LPJ_G0031126 | mus_musculus_lpj | MGP_LPJ_P0079689 | 100 | 100 | mus_musculus_c3hhej | MGP_C3HHeJ_P0079547 | 100 | 100 |
MGP_LPJ_G0031126 | mus_musculus_lpj | MGP_LPJ_P0079689 | 100 | 100 | mus_musculus_fvbnj | MGP_FVBNJ_P0079536 | 100 | 100 |
MGP_LPJ_G0031126 | mus_musculus_lpj | MGP_LPJ_P0079689 | 100 | 100 | mus_musculus | ENSMUSP00000108205 | 100 | 100 |
MGP_LPJ_G0031126 | mus_musculus_lpj | MGP_LPJ_P0079689 | 100 | 100 | mus_musculus_akrj | MGP_AKRJ_P0079900 | 100 | 100 |
MGP_LPJ_G0031126 | mus_musculus_lpj | MGP_LPJ_P0079689 | 100 | 100 | mus_musculus_dba2j | MGP_DBA2J_P0079654 | 100 | 100 |
MGP_LPJ_G0031126 | mus_musculus_lpj | MGP_LPJ_P0079689 | 100 | 100 | mus_spretus | MGP_SPRETEiJ_P0079074 | 100 | 100 |
MGP_LPJ_G0031126 | mus_musculus_lpj | MGP_LPJ_P0079689 | 100 | 99.5633 | mus_musculus_casteij | MGP_CASTEiJ_P0080139 | 100 | 99.5633 |
MGP_LPJ_G0031126 | mus_musculus_lpj | MGP_LPJ_P0079689 | 100 | 100 | mus_musculus_nzohlltj | MGP_NZOHlLtJ_P0080650 | 100 | 100 |
MGP_LPJ_G0031126 | mus_musculus_lpj | MGP_LPJ_P0079689 | 50.655 | 48.9083 | mus_pahari | MGP_PahariEiJ_P0052190 | 95.8678 | 92.562 |
MGP_LPJ_G0031126 | mus_musculus_lpj | MGP_LPJ_P0079689 | 94.7598 | 93.4498 | mus_spicilegus | ENSMSIP00000034717 | 87.8542 | 86.6397 |
MGP_LPJ_G0031126 | mus_musculus_lpj | MGP_LPJ_P0079689 | 100 | 100 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0079544 | 100 | 100 |
MGP_LPJ_G0031126 | mus_musculus_lpj | MGP_LPJ_P0079689 | 100 | 100 | mus_musculus_wsbeij | MGP_WSBEiJ_P0078650 | 100 | 100 |
MGP_LPJ_G0031126 | mus_musculus_lpj | MGP_LPJ_P0079689 | 96.0699 | 91.7031 | rattus_norvegicus | ENSRNOP00000094681 | 73.5786 | 70.2341 |
MGP_LPJ_G0031126 | mus_musculus_lpj | MGP_LPJ_P0079689 | 100 | 99.5633 | mus_musculus_pwkphj | MGP_PWKPhJ_P0079572 | 100 | 99.5633 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |