Description

Ensembl ID MGP_LPJ_G0031126 Gene ID Accession -
Symbol Apobec1 Alias - Full Name apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1
Status Confidence Length 24863 bases Strand Minus strand
Position 6 : 125826378 - 125851240 RNA binding domain APOBEC_N , APOBEC_C
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_LPJ_P0079689 APOBEC_N PF08210 3.9e-33 1
MGP_LPJ_P0079689 APOBEC_C PF05240 8.3e-22 2
MGP_LPJ_P0079690 APOBEC_N PF08210 3.9e-33 1
MGP_LPJ_P0079690 APOBEC_C PF05240 8.3e-22 2
MGP_LPJ_P0079691 APOBEC_N PF08210 3.9e-33 1
MGP_LPJ_P0079691 APOBEC_C PF05240 8.3e-22 2
MGP_LPJ_P0079692 APOBEC_N PF08210 7e-19 1
MGP_LPJ_P0079693 APOBEC_N PF08210 1.4e-14 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Apobec1-001 MGP_LPJ_T0079689 2265 229aa MGP_LPJ_P0079689"/note="transcript_id=MGP_LPJ_T0079689
- MGP_LPJ_T0079690 2072 229aa MGP_LPJ_P0079690"/note="transcript_id=MGP_LPJ_T0079690
- MGP_LPJ_T0079691 2127 229aa MGP_LPJ_P0079691"/note="transcript_id=MGP_LPJ_T0079691
- MGP_LPJ_T0079692 666 121aa MGP_LPJ_P0079692"/note="transcript_id=MGP_LPJ_T0079692
- MGP_LPJ_T0079693 775 113aa MGP_LPJ_P0079693"/note="transcript_id=MGP_LPJ_T0079693
- MGP_LPJ_T0079694 372 43aa MGP_LPJ_P0079694"/note="transcript_id=MGP_LPJ_T0079694
- MGP_LPJ_T0079695 360 25aa MGP_LPJ_P0079695"/note="transcript_id=MGP_LPJ_T0079695
- MGP_LPJ_T0079696 560 No protein -
- MGP_LPJ_T0079697 520 No protein -

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_LPJ_G0031126mus_musculus_lpjMGP_LPJ_P004796734.37518.3036mus_musculus_lpjMGP_LPJ_P007968933.624517.9039
MGP_LPJ_G0031126mus_musculus_lpjMGP_LPJ_P007968739.89928.2828mus_musculus_lpjMGP_LPJ_P007968934.497824.4541
MGP_LPJ_G0031126mus_musculus_lpjMGP_LPJ_P004158824.545515mus_musculus_lpjMGP_LPJ_P007968947.161628.821

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_LPJ_G0031126mus_musculus_lpjMGP_LPJ_P007968927.074219.214mus_caroliMGP_CAROLIEiJ_P007590434.636924.581
MGP_LPJ_G0031126mus_musculus_lpjMGP_LPJ_P0079689100100mus_musculus_balbcjMGP_BALBcJ_P0079920100100
MGP_LPJ_G0031126mus_musculus_lpjMGP_LPJ_P0079689100100mus_musculus_ajMGP_AJ_P0079974100100
MGP_LPJ_G0031126mus_musculus_lpjMGP_LPJ_P0079689100100mus_musculus_c57bl6njMGP_C57BL6NJ_P0080391100100
MGP_LPJ_G0031126mus_musculus_lpjMGP_LPJ_P0079689100100mus_musculus_cbajMGP_CBAJ_P0079498100100
MGP_LPJ_G0031126mus_musculus_lpjMGP_LPJ_P0079689100100mus_musculus_129s1svimjMGP_129S1SvImJ_P0079913100100
MGP_LPJ_G0031126mus_musculus_lpjMGP_LPJ_P0079689100100mus_musculus_c3hhejMGP_C3HHeJ_P0079547100100
MGP_LPJ_G0031126mus_musculus_lpjMGP_LPJ_P0079689100100mus_musculus_fvbnjMGP_FVBNJ_P0079536100100
MGP_LPJ_G0031126mus_musculus_lpjMGP_LPJ_P0079689100100mus_musculusENSMUSP00000108205100100
MGP_LPJ_G0031126mus_musculus_lpjMGP_LPJ_P0079689100100mus_musculus_akrjMGP_AKRJ_P0079900100100
MGP_LPJ_G0031126mus_musculus_lpjMGP_LPJ_P0079689100100mus_musculus_dba2jMGP_DBA2J_P0079654100100
MGP_LPJ_G0031126mus_musculus_lpjMGP_LPJ_P0079689100100mus_spretusMGP_SPRETEiJ_P0079074100100
MGP_LPJ_G0031126mus_musculus_lpjMGP_LPJ_P007968910099.5633mus_musculus_casteijMGP_CASTEiJ_P008013910099.5633
MGP_LPJ_G0031126mus_musculus_lpjMGP_LPJ_P0079689100100mus_musculus_nzohlltjMGP_NZOHlLtJ_P0080650100100
MGP_LPJ_G0031126mus_musculus_lpjMGP_LPJ_P007968950.65548.9083mus_pahariMGP_PahariEiJ_P005219095.867892.562
MGP_LPJ_G0031126mus_musculus_lpjMGP_LPJ_P007968994.759893.4498mus_spicilegusENSMSIP0000003471787.854286.6397
MGP_LPJ_G0031126mus_musculus_lpjMGP_LPJ_P0079689100100mus_musculus_nodshiltjMGP_NODShiLtJ_P0079544100100
MGP_LPJ_G0031126mus_musculus_lpjMGP_LPJ_P0079689100100mus_musculus_wsbeijMGP_WSBEiJ_P0078650100100
MGP_LPJ_G0031126mus_musculus_lpjMGP_LPJ_P007968996.069991.7031rattus_norvegicusENSRNOP0000009468173.578670.2341
MGP_LPJ_G0031126mus_musculus_lpjMGP_LPJ_P007968910099.5633mus_musculus_pwkphjMGP_PWKPhJ_P007957210099.5633

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression