Description

Ensembl ID MGP_LPJ_G0030265 Gene ID Accession -
Symbol Ptcd1 Alias - Full Name pentatricopeptide repeat domain 1
Status Confidence Length 21746 bases Strand Minus strand
Position 5 : 151157028 - 151178773 RNA binding domain PPR_3 , PPR_long , PPR
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_LPJ_P0075624 PPR_3 PF13812 6.3e-29 1
MGP_LPJ_P0075624 PPR_3 PF13812 6.3e-29 2
MGP_LPJ_P0075624 PPR_3 PF13812 6.3e-29 3
MGP_LPJ_P0075624 PPR_long PF17177 3.7e-19 4
MGP_LPJ_P0075624 PPR PF01535 1.5e-17 5
MGP_LPJ_P0075624 PPR PF01535 1.5e-17 6

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Ptcd1-001 MGP_LPJ_T0075624 3082 695aa MGP_LPJ_P0075624"/note="transcript_id=MGP_LPJ_T0075624
- MGP_LPJ_T0075625 273 20aa MGP_LPJ_P0075625"/note="transcript_id=MGP_LPJ_T0075625

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_LPJ_G0030265mus_musculus_lpjMGP_LPJ_P007417942.120323.7822mus_musculus_lpjMGP_LPJ_P007562421.151111.9424

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_LPJ_G0030265mus_musculus_lpjMGP_LPJ_P007562498.417397.4101mus_caroliMGP_CAROLIEiJ_P007213898.417397.4101
MGP_LPJ_G0030265mus_musculus_lpjMGP_LPJ_P007562410099.8561mus_musculus_balbcjMGP_BALBcJ_P007584910099.8561
MGP_LPJ_G0030265mus_musculus_lpjMGP_LPJ_P007562410099.8561mus_musculus_ajMGP_AJ_P007590010099.8561
MGP_LPJ_G0030265mus_musculus_lpjMGP_LPJ_P007562499.568399.4245mus_musculus_c57bl6njMGP_C57BL6NJ_P007631099.568399.4245
MGP_LPJ_G0030265mus_musculus_lpjMGP_LPJ_P0075624100100mus_musculus_cbajMGP_CBAJ_P0075420100100
MGP_LPJ_G0030265mus_musculus_lpjMGP_LPJ_P0075624100100mus_musculus_129s1svimjMGP_129S1SvImJ_P0075823100100
MGP_LPJ_G0030265mus_musculus_lpjMGP_LPJ_P007562410099.8561mus_musculus_c3hhejMGP_C3HHeJ_P007546910099.8561
MGP_LPJ_G0030265mus_musculus_lpjMGP_LPJ_P007562499.856199.5683mus_musculus_fvbnjMGP_FVBNJ_P007546999.856199.5683
MGP_LPJ_G0030265mus_musculus_lpjMGP_LPJ_P007562499.568399.4245mus_musculusENSMUSP0000003162899.568399.4245
MGP_LPJ_G0030265mus_musculus_lpjMGP_LPJ_P0075624100100mus_musculus_akrjMGP_AKRJ_P0075804100100
MGP_LPJ_G0030265mus_musculus_lpjMGP_LPJ_P007562410099.8561mus_musculus_dba2jMGP_DBA2J_P007557810099.8561
MGP_LPJ_G0030265mus_musculus_lpjMGP_LPJ_P007562499.280698.705mus_spretusMGP_SPRETEiJ_P007495799.280698.705
MGP_LPJ_G0030265mus_musculus_lpjMGP_LPJ_P007562499.712299.4245mus_musculus_casteijMGP_CASTEiJ_P007601399.712299.4245
MGP_LPJ_G0030265mus_musculus_lpjMGP_LPJ_P007562499.568399.5683mus_musculus_nzohlltjMGP_NZOHlLtJ_P007655799.568399.5683
MGP_LPJ_G0030265mus_musculus_lpjMGP_LPJ_P007562495.971293.9568mus_pahariMGP_PahariEiJ_P006034996.109594.0922
MGP_LPJ_G0030265mus_musculus_lpjMGP_LPJ_P007562498.848998.4173mus_spicilegusENSMSIP0000003471398.848998.4173
MGP_LPJ_G0030265mus_musculus_lpjMGP_LPJ_P007562499.856199.5683mus_musculus_nodshiltjMGP_NODShiLtJ_P007548199.856199.5683
MGP_LPJ_G0030265mus_musculus_lpjMGP_LPJ_P007562499.568399.5683mus_musculus_wsbeijMGP_WSBEiJ_P007460199.568399.5683
MGP_LPJ_G0030265mus_musculus_lpjMGP_LPJ_P007562492.230288.3453rattus_norvegicusENSRNOP0000006809393.440289.5044
MGP_LPJ_G0030265mus_musculus_lpjMGP_LPJ_P007562499.136798.4173mus_musculus_pwkphjMGP_PWKPhJ_P007546499.136798.4173

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression