Description

Ensembl ID MGP_LPJ_G0027098 Gene ID Accession -
Symbol Exosc9 Alias - Full Name exosome component 9
Status Confidence Length 13132 bases Strand Plus strand
Position 3 : 35138933 - 35152064 RNA binding domain RNase_PH , RNase_PH_C
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_LPJ_P0060379 RNase_PH PF01138 9.4e-23 1
MGP_LPJ_P0060379 RNase_PH_C PF03725 1.6e-09 2
MGP_LPJ_P0060378 RNase_PH PF01138 3e-22 1
MGP_LPJ_P0060378 RNase_PH_C PF03725 3.7e-12 2
MGP_LPJ_P0060382 RNase_PH PF01138 1.5e-13 1
MGP_LPJ_P0060382 RNase_PH_C PF03725 2.3e-07 2
MGP_LPJ_P0060384 RNase_PH_C PF03725 4e-09 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Exosc9-001 MGP_LPJ_T0060378 1627 437aa MGP_LPJ_P0060378"/note="transcript_id=MGP_LPJ_T0060378
- MGP_LPJ_T0060379 1227 242aa MGP_LPJ_P0060379"/note="transcript_id=MGP_LPJ_T0060379
- MGP_LPJ_T0060380 1760 No protein -
- MGP_LPJ_T0060381 913 No protein -
- MGP_LPJ_T0060382 647 147aa MGP_LPJ_P0060382"/note="transcript_id=MGP_LPJ_T0060382
- MGP_LPJ_T0060383 2470 No protein -
- MGP_LPJ_T0060384 515 131aa MGP_LPJ_P0060384"/note="transcript_id=MGP_LPJ_T0060384
- MGP_LPJ_T0060385 692 111aa MGP_LPJ_P0060385"/note="transcript_id=MGP_LPJ_T0060385

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_LPJ_G0027098mus_musculus_lpjMGP_LPJ_P006069948.91326.087mus_musculus_lpjMGP_LPJ_P006037830.892416.476
MGP_LPJ_G0027098mus_musculus_lpjMGP_LPJ_P009507646.048128.1787mus_musculus_lpjMGP_LPJ_P006037830.663618.7643

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_LPJ_G0027098mus_musculus_lpjMGP_LPJ_P006037899.313598.3982mus_caroliMGP_CAROLIEiJ_P005736599.541398.6239
MGP_LPJ_G0027098mus_musculus_lpjMGP_LPJ_P006037810099.7712mus_musculus_balbcjMGP_BALBcJ_P006047299.771799.5434
MGP_LPJ_G0027098mus_musculus_lpjMGP_LPJ_P0060378100100mus_musculus_ajMGP_AJ_P0060538100100
MGP_LPJ_G0027098mus_musculus_lpjMGP_LPJ_P006037810099.7712mus_musculus_c57bl6njMGP_C57BL6NJ_P006094799.771799.5434
MGP_LPJ_G0027098mus_musculus_lpjMGP_LPJ_P0060378100100mus_musculus_cbajMGP_CBAJ_P0060133100100
MGP_LPJ_G0027098mus_musculus_lpjMGP_LPJ_P0060378100100mus_musculus_129s1svimjMGP_129S1SvImJ_P0060521100100
MGP_LPJ_G0027098mus_musculus_lpjMGP_LPJ_P0060378100100mus_musculus_c3hhejMGP_C3HHeJ_P0060157100100
MGP_LPJ_G0027098mus_musculus_lpjMGP_LPJ_P006037810099.7712mus_musculus_fvbnjMGP_FVBNJ_P006022199.771799.5434
MGP_LPJ_G0027098mus_musculus_lpjMGP_LPJ_P006037810099.7712mus_musculusENSMUSP0000002926999.771799.5434
MGP_LPJ_G0027098mus_musculus_lpjMGP_LPJ_P006037899.771299.5423mus_musculus_akrjMGP_AKRJ_P006047599.543499.3151
MGP_LPJ_G0027098mus_musculus_lpjMGP_LPJ_P0060378100100mus_musculus_dba2jMGP_DBA2J_P0060234100100
MGP_LPJ_G0027098mus_musculus_lpjMGP_LPJ_P006037899.771299.5423mus_spretusMGP_SPRETEiJ_P005962599.543499.3151
MGP_LPJ_G0027098mus_musculus_lpjMGP_LPJ_P006037810099.7712mus_musculus_casteijMGP_CASTEiJ_P006045899.771799.5434
MGP_LPJ_G0027098mus_musculus_lpjMGP_LPJ_P0060378100100mus_musculus_nzohlltjMGP_NZOHlLtJ_P0061130100100
MGP_LPJ_G0027098mus_musculus_lpjMGP_LPJ_P006037898.62797.0252mus_pahariMGP_PahariEiJ_P006832499.080597.4713
MGP_LPJ_G0027098mus_musculus_lpjMGP_LPJ_P006037899.542399.3135mus_spicilegusENSMSIP0000001160599.315199.0868
MGP_LPJ_G0027098mus_musculus_lpjMGP_LPJ_P0060378100100mus_musculus_nodshiltjMGP_NODShiLtJ_P0060191100100
MGP_LPJ_G0027098mus_musculus_lpjMGP_LPJ_P0060378100100mus_musculus_wsbeijMGP_WSBEiJ_P0059435100100
MGP_LPJ_G0027098mus_musculus_lpjMGP_LPJ_P006037899.084797.9405rattus_norvegicusENSRNOP0000002066299.084797.9405
MGP_LPJ_G0027098mus_musculus_lpjMGP_LPJ_P006037810099.7712mus_musculus_pwkphjMGP_PWKPhJ_P006001499.771799.5434

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression