Description

Ensembl ID MGP_LPJ_G0026723 Gene ID Accession -
Symbol Rprd1b Alias - Full Name regulation of nuclear pre-mRNA domain containing 1B
Status Confidence Length 114696 bases Strand Plus strand
Position 2 : 163158814 - 163273509 RNA binding domain CREPT , CID
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_LPJ_P0058739 CREPT PF16566 6e-65 1
MGP_LPJ_P0058739 CID PF04818 1.5e-36 2
MGP_LPJ_P0058743 CREPT PF16566 6.1e-65 1
MGP_LPJ_P0058743 CID PF04818 1.5e-36 2
MGP_LPJ_P0058745 CREPT PF16566 3.6e-38 1
MGP_LPJ_P0058746 CREPT PF16566 1.5e-37 1
MGP_LPJ_P0058742 CREPT PF16566 1.9e-37 1
MGP_LPJ_P0058742 CID PF04818 9.4e-37 2
MGP_LPJ_P0058744 CREPT PF16566 9.1e-14 1
MGP_LPJ_P0058744 CID PF04818 5.2e-37 2

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Rprd1b-001 MGP_LPJ_T0058739 4499 325aa MGP_LPJ_P0058739"/note="transcript_id=MGP_LPJ_T0058739
- MGP_LPJ_T0058740 1597 No protein -
- MGP_LPJ_T0058741 4174 No protein -
- MGP_LPJ_T0058742 4394 294aa MGP_LPJ_P0058742"/note="transcript_id=MGP_LPJ_T0058742
- MGP_LPJ_T0058743 4278 326aa MGP_LPJ_P0058743"/note="transcript_id=MGP_LPJ_T0058743
- MGP_LPJ_T0058744 1910 224aa MGP_LPJ_P0058744"/note="transcript_id=MGP_LPJ_T0058744
- MGP_LPJ_T0058745 764 193aa MGP_LPJ_P0058745"/note="transcript_id=MGP_LPJ_T0058745
- MGP_LPJ_T0058746 428 142aa MGP_LPJ_P0058746"/note="transcript_id=MGP_LPJ_T0058746

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_LPJ_G0026723mus_musculus_lpjMGP_LPJ_P004896684.615468.5897mus_musculus_lpjMGP_LPJ_P005874380.981665.6442
MGP_LPJ_G0026723mus_musculus_lpjMGP_LPJ_P006233610.61956.05854mus_musculus_lpjMGP_LPJ_P005874347.852827.3006

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_LPJ_G0026723mus_musculus_lpjMGP_LPJ_P0058743100100mus_caroliMGP_CAROLIEiJ_P0055814100100
MGP_LPJ_G0026723mus_musculus_lpjMGP_LPJ_P0058743100100mus_musculus_balbcjMGP_BALBcJ_P0058859100100
MGP_LPJ_G0026723mus_musculus_lpjMGP_LPJ_P0058743100100mus_musculus_ajMGP_AJ_P0058923100100
MGP_LPJ_G0026723mus_musculus_lpjMGP_LPJ_P0058743100100mus_musculus_c57bl6njMGP_C57BL6NJ_P0059334100100
MGP_LPJ_G0026723mus_musculus_lpjMGP_LPJ_P0058743100100mus_musculus_cbajMGP_CBAJ_P0058525100100
MGP_LPJ_G0026723mus_musculus_lpjMGP_LPJ_P005874368.098268.0982mus_musculus_129s1svimjMGP_129S1SvImJ_P005890299.107199.1071
MGP_LPJ_G0026723mus_musculus_lpjMGP_LPJ_P0058743100100mus_musculus_c3hhejMGP_C3HHeJ_P0058561100100
MGP_LPJ_G0026723mus_musculus_lpjMGP_LPJ_P0058743100100mus_musculus_fvbnjMGP_FVBNJ_P0058615100100
MGP_LPJ_G0026723mus_musculus_lpjMGP_LPJ_P0058743100100mus_musculusENSMUSP00000029180100100
MGP_LPJ_G0026723mus_musculus_lpjMGP_LPJ_P0058743100100mus_musculus_akrjMGP_AKRJ_P0058868100100
MGP_LPJ_G0026723mus_musculus_lpjMGP_LPJ_P0058743100100mus_musculus_dba2jMGP_DBA2J_P0058630100100
MGP_LPJ_G0026723mus_musculus_lpjMGP_LPJ_P0058743100100mus_spretusMGP_SPRETEiJ_P0057972100100
MGP_LPJ_G0026723mus_musculus_lpjMGP_LPJ_P0058743100100mus_musculus_casteijMGP_CASTEiJ_P0058824100100
MGP_LPJ_G0026723mus_musculus_lpjMGP_LPJ_P0058743100100mus_musculus_nzohlltjMGP_NZOHlLtJ_P0059514100100
MGP_LPJ_G0026723mus_musculus_lpjMGP_LPJ_P0058743100100mus_pahariMGP_PahariEiJ_P0066795100100
MGP_LPJ_G0026723mus_musculus_lpjMGP_LPJ_P005874389.570588.0368mus_spicilegusENSMSIP0000003317588.753887.234
MGP_LPJ_G0026723mus_musculus_lpjMGP_LPJ_P0058743100100mus_musculus_nodshiltjMGP_NODShiLtJ_P0058590100100
MGP_LPJ_G0026723mus_musculus_lpjMGP_LPJ_P0058743100100mus_musculus_wsbeijMGP_WSBEiJ_P0057840100100
MGP_LPJ_G0026723mus_musculus_lpjMGP_LPJ_P0058743100100rattus_norvegicusENSRNOP00000017265100100
MGP_LPJ_G0026723mus_musculus_lpjMGP_LPJ_P0058743100100mus_musculus_pwkphjMGP_PWKPhJ_P0058393100100

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression