RBPWorld - a comprehensive database of RNA Binding Proteins

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Description

Ensembl ID	MGP_LPJ_G0023978	Gene ID		Accession	-
Symbol	Thumpd2	Alias	-	Full Name	THUMP domain containing 2
Status	Confidence	Length	39750 bases	Strand	Minus strand
Position	17 : 84827298 - 84867047	RNA binding domain	Methyltransf_31 , UPF0020 , THUMP , MTS
Summary	N.A.

RNA binding domains (RBDs)

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Protein	Domain	Pfam ID	E-value	Domain number
MGP_LPJ_P0048501	Methyltransf_31	PF13847	7.3e-13	1
MGP_LPJ_P0048501	UPF0020	PF01170	1.1e-25	2
MGP_LPJ_P0048501	THUMP	PF02926	1.7e-05	3
MGP_LPJ_P0048501	MTS	PF05175	3.2e-06	4

Showing 1 to 4 of 4 entries

Transcripts

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Name	Transcript ID	bp	Protein	Translation ID
Thumpd2-201	MGP_LPJ_T0048501	1856	528aa	MGP_LPJ_P0048501"/note="transcript_id=MGP_LPJ_T0048501

Showing 1 to 1 of 1 entries

Gene Model

Click here to download MGP_LPJ_G0023978's gene model file

Protein-Protein Interaction (PPI)

Click here to download MGP_LPJ_G0023978's PPI file

Paralogs

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Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_LPJ_G0023978	mus_musculus_lpj	MGP_LPJ_P0079012	43.5644	25.1485	mus_musculus_lpj	MGP_LPJ_P0048501	41.6667	24.053

Showing 1 to 1 of 1 entries

Orthologs

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Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_LPJ_G0023978	mus_musculus_lpj	MGP_LPJ_P0048501	97.3485	94.8864	mus_caroli	MGP_CAROLIEiJ_P0045720	97.3485	94.8864
MGP_LPJ_G0023978	mus_musculus_lpj	MGP_LPJ_P0048501	100	100	mus_musculus_balbcj	MGP_BALBcJ_P0048614	100	100
MGP_LPJ_G0023978	mus_musculus_lpj	MGP_LPJ_P0048501	100	100	mus_musculus_aj	MGP_AJ_P0048653	100	100
MGP_LPJ_G0023978	mus_musculus_lpj	MGP_LPJ_P0048501	100	100	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0049107	100	100
MGP_LPJ_G0023978	mus_musculus_lpj	MGP_LPJ_P0048501	99.4318	99.2424	mus_musculus_cbaj	MGP_CBAJ_P0048286	99.2439	99.0548
MGP_LPJ_G0023978	mus_musculus_lpj	MGP_LPJ_P0048501	100	100	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0048674	100	100
MGP_LPJ_G0023978	mus_musculus_lpj	MGP_LPJ_P0048501	99.4318	99.2424	mus_musculus_c3hhej	MGP_C3HHeJ_P0048361	99.2439	99.0548
MGP_LPJ_G0023978	mus_musculus_lpj	MGP_LPJ_P0048501	100	100	mus_musculus_fvbnj	MGP_FVBNJ_P0048353	100	100
MGP_LPJ_G0023978	mus_musculus_lpj	MGP_LPJ_P0048501	100	100	mus_musculus	ENSMUSP00000025093	100	100
MGP_LPJ_G0023978	mus_musculus_lpj	MGP_LPJ_P0048501	100	100	mus_musculus_akrj	MGP_AKRJ_P0048615	100	100

Showing 1 to 10 of 20 entries

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Contents

Description
RBDs
Transcripts
Gene Model
PPI
Paralogs
Orthologs