RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | MGP_LPJ_G0021989 | Gene ID |
|
Accession |
- |
Symbol |
Apobec3 |
Alias |
- |
Full Name |
apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3 |
Status |
Confidence |
Length |
24126 bases |
Strand |
Plus strand |
Position |
15 : 80374258 - 80398383 |
RNA binding domain |
APOBEC_N , APOBEC_C |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
MGP_LPJ_P0041587 |
APOBEC_N |
PF08210 |
3.3e-83 |
1 |
MGP_LPJ_P0041587 |
APOBEC_N |
PF08210 |
3.3e-83 |
2 |
MGP_LPJ_P0041587 |
APOBEC_C |
PF05240 |
2.4e-55 |
3 |
MGP_LPJ_P0041587 |
APOBEC_C |
PF05240 |
2.4e-55 |
4 |
MGP_LPJ_P0041585 |
APOBEC_N |
PF08210 |
3.8e-83 |
1 |
MGP_LPJ_P0041585 |
APOBEC_N |
PF08210 |
3.8e-83 |
2 |
MGP_LPJ_P0041585 |
APOBEC_C |
PF05240 |
2.6e-55 |
3 |
MGP_LPJ_P0041585 |
APOBEC_C |
PF05240 |
2.6e-55 |
4 |
MGP_LPJ_P0041582 |
APOBEC_N |
PF08210 |
4.7e-83 |
1 |
MGP_LPJ_P0041582 |
APOBEC_N |
PF08210 |
4.7e-83 |
2 |
MGP_LPJ_P0041582 |
APOBEC_C |
PF05240 |
4.5e-55 |
3 |
MGP_LPJ_P0041582 |
APOBEC_C |
PF05240 |
4.5e-55 |
4 |
MGP_LPJ_P0041586 |
APOBEC_N |
PF08210 |
4.8e-83 |
1 |
MGP_LPJ_P0041586 |
APOBEC_N |
PF08210 |
4.8e-83 |
2 |
MGP_LPJ_P0041586 |
APOBEC_C |
PF05240 |
4.7e-55 |
3 |
MGP_LPJ_P0041586 |
APOBEC_C |
PF05240 |
4.7e-55 |
4 |
MGP_LPJ_P0041588 |
APOBEC_N |
PF08210 |
5.2e-83 |
1 |
MGP_LPJ_P0041588 |
APOBEC_N |
PF08210 |
5.2e-83 |
2 |
MGP_LPJ_P0041588 |
APOBEC_C |
PF05240 |
4.6e-55 |
3 |
MGP_LPJ_P0041588 |
APOBEC_C |
PF05240 |
4.6e-55 |
4 |
MGP_LPJ_P0041580 |
APOBEC_N |
PF08210 |
9.8e-29 |
1 |
MGP_LPJ_P0041580 |
APOBEC_C |
PF05240 |
8.3e-30 |
2 |
MGP_LPJ_P0041579 |
APOBEC_N |
PF08210 |
1.5e-28 |
1 |
MGP_LPJ_P0041579 |
APOBEC_C |
PF05240 |
6.5e-30 |
2 |
MGP_LPJ_P0041589 |
APOBEC_N |
PF08210 |
4.7e-26 |
1 |
MGP_LPJ_P0041589 |
APOBEC_C |
PF05240 |
1.2e-25 |
2 |
MGP_LPJ_P0041583 |
APOBEC_N |
PF08210 |
2.9e-07 |
1 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
Apobec3-001 |
MGP_LPJ_T0041579 |
750 |
166aa |
MGP_LPJ_P0041579"/note="transcript_id=MGP_LPJ_T0041579 |
- |
MGP_LPJ_T0041580 |
817 |
151aa |
MGP_LPJ_P0041580"/note="transcript_id=MGP_LPJ_T0041580 |
- |
MGP_LPJ_T0041581 |
607 |
No protein |
- |
- |
MGP_LPJ_T0041582 |
2460 |
429aa |
MGP_LPJ_P0041582"/note="transcript_id=MGP_LPJ_T0041582 |
- |
MGP_LPJ_T0041583 |
699 |
79aa |
MGP_LPJ_P0041583"/note="transcript_id=MGP_LPJ_T0041583 |
- |
MGP_LPJ_T0041584 |
1217 |
46aa |
MGP_LPJ_P0041584"/note="transcript_id=MGP_LPJ_T0041584 |
- |
MGP_LPJ_T0041585 |
1980 |
407aa |
MGP_LPJ_P0041585"/note="transcript_id=MGP_LPJ_T0041585 |
- |
MGP_LPJ_T0041586 |
2780 |
430aa |
MGP_LPJ_P0041586"/note="transcript_id=MGP_LPJ_T0041586 |
- |
MGP_LPJ_T0041587 |
2246 |
392aa |
MGP_LPJ_P0041587"/note="transcript_id=MGP_LPJ_T0041587 |
- |
MGP_LPJ_T0041588 |
1323 |
440aa |
MGP_LPJ_P0041588"/note="transcript_id=MGP_LPJ_T0041588 |
- |
MGP_LPJ_T0041589 |
648 |
85aa |
MGP_LPJ_P0041589"/note="transcript_id=MGP_LPJ_T0041589 |
- |
MGP_LPJ_T0041590 |
731 |
No protein |
- |
- |
MGP_LPJ_T0041591 |
2082 |
No protein |
- |
- |
MGP_LPJ_T0041592 |
720 |
No protein |
- |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_LPJ_G0021989 | mus_musculus_lpj | MGP_LPJ_P0079689 | 47.1616 | 28.821 | mus_musculus_lpj | MGP_LPJ_P0041588 | 24.5455 | 15 |
MGP_LPJ_G0021989 | mus_musculus_lpj | MGP_LPJ_P0047967 | 44.1964 | 28.125 | mus_musculus_lpj | MGP_LPJ_P0041588 | 22.5 | 14.3182 |
MGP_LPJ_G0021989 | mus_musculus_lpj | MGP_LPJ_P0079687 | 55.5556 | 37.8788 | mus_musculus_lpj | MGP_LPJ_P0041588 | 25 | 17.0455 |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_LPJ_G0021989 | mus_musculus_lpj | MGP_LPJ_P0041588 | 94.3182 | 90.2273 | mus_caroli | MGP_CAROLIEiJ_P0039006 | 94.3182 | 90.2273 |
MGP_LPJ_G0021989 | mus_musculus_lpj | MGP_LPJ_P0041588 | 100 | 100 | mus_musculus_balbcj | MGP_BALBcJ_P0041727 | 100 | 100 |
MGP_LPJ_G0021989 | mus_musculus_lpj | MGP_LPJ_P0041588 | 100 | 100 | mus_musculus_aj | MGP_AJ_P0041732 | 100 | 100 |
MGP_LPJ_G0021989 | mus_musculus_lpj | MGP_LPJ_P0041588 | 97.5 | 95.9091 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0042201 | 97.5 | 95.9091 |
MGP_LPJ_G0021989 | mus_musculus_lpj | MGP_LPJ_P0041588 | 100 | 100 | mus_musculus_cbaj | MGP_CBAJ_P0041369 | 100 | 100 |
MGP_LPJ_G0021989 | mus_musculus_lpj | MGP_LPJ_P0041588 | 100 | 100 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0041767 | 100 | 100 |
MGP_LPJ_G0021989 | mus_musculus_lpj | MGP_LPJ_P0041588 | 100 | 100 | mus_musculus_c3hhej | MGP_C3HHeJ_P0041460 | 100 | 100 |
MGP_LPJ_G0021989 | mus_musculus_lpj | MGP_LPJ_P0041588 | 100 | 100 | mus_musculus_fvbnj | MGP_FVBNJ_P0041497 | 100 | 100 |
MGP_LPJ_G0021989 | mus_musculus_lpj | MGP_LPJ_P0041588 | 97.5 | 95.9091 | mus_musculus | ENSMUSP00000135027 | 97.5 | 95.9091 |
MGP_LPJ_G0021989 | mus_musculus_lpj | MGP_LPJ_P0041588 | 100 | 100 | mus_musculus_akrj | MGP_AKRJ_P0041694 | 100 | 100 |
MGP_LPJ_G0021989 | mus_musculus_lpj | MGP_LPJ_P0041588 | 100 | 100 | mus_musculus_dba2j | MGP_DBA2J_P0041526 | 100 | 100 |
MGP_LPJ_G0021989 | mus_musculus_lpj | MGP_LPJ_P0041588 | 100 | 100 | mus_spretus | MGP_SPRETEiJ_P0040813 | 100 | 100 |
MGP_LPJ_G0021989 | mus_musculus_lpj | MGP_LPJ_P0041588 | 99.5455 | 99.3182 | mus_musculus_casteij | MGP_CASTEiJ_P0041533 | 99.5455 | 99.3182 |
MGP_LPJ_G0021989 | mus_musculus_lpj | MGP_LPJ_P0041588 | 97.5 | 95.9091 | mus_musculus_nzohlltj | MGP_NZOHlLtJ_P0042235 | 97.5 | 95.9091 |
MGP_LPJ_G0021989 | mus_musculus_lpj | MGP_LPJ_P0041588 | 88.1818 | 82.2727 | mus_pahari | MGP_PahariEiJ_P0042359 | 87.5846 | 81.7156 |
MGP_LPJ_G0021989 | mus_musculus_lpj | MGP_LPJ_P0041588 | 97.5 | 96.3636 | mus_spicilegus | ENSMSIP00000034718 | 97.5 | 96.3636 |
MGP_LPJ_G0021989 | mus_musculus_lpj | MGP_LPJ_P0041588 | 100 | 100 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0041468 | 100 | 100 |
MGP_LPJ_G0021989 | mus_musculus_lpj | MGP_LPJ_P0041588 | 97.5 | 95.9091 | mus_musculus_wsbeij | MGP_WSBEiJ_P0040857 | 97.5 | 95.9091 |
MGP_LPJ_G0021989 | mus_musculus_lpj | MGP_LPJ_P0041588 | 79.3182 | 70 | rattus_norvegicus | ENSRNOP00000095626 | 78.6036 | 69.3694 |
MGP_LPJ_G0021989 | mus_musculus_lpj | MGP_LPJ_P0041588 | 97.2727 | 95.9091 | mus_musculus_pwkphj | MGP_PWKPhJ_P0041111 | 97.2727 | 95.9091 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |