Description

Ensembl ID MGP_LPJ_G0021989 Gene ID Accession -
Symbol Apobec3 Alias - Full Name apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3
Status Confidence Length 24126 bases Strand Plus strand
Position 15 : 80374258 - 80398383 RNA binding domain APOBEC_N , APOBEC_C
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_LPJ_P0041587 APOBEC_N PF08210 3.3e-83 1
MGP_LPJ_P0041587 APOBEC_N PF08210 3.3e-83 2
MGP_LPJ_P0041587 APOBEC_C PF05240 2.4e-55 3
MGP_LPJ_P0041587 APOBEC_C PF05240 2.4e-55 4
MGP_LPJ_P0041585 APOBEC_N PF08210 3.8e-83 1
MGP_LPJ_P0041585 APOBEC_N PF08210 3.8e-83 2
MGP_LPJ_P0041585 APOBEC_C PF05240 2.6e-55 3
MGP_LPJ_P0041585 APOBEC_C PF05240 2.6e-55 4
MGP_LPJ_P0041582 APOBEC_N PF08210 4.7e-83 1
MGP_LPJ_P0041582 APOBEC_N PF08210 4.7e-83 2
MGP_LPJ_P0041582 APOBEC_C PF05240 4.5e-55 3
MGP_LPJ_P0041582 APOBEC_C PF05240 4.5e-55 4
MGP_LPJ_P0041586 APOBEC_N PF08210 4.8e-83 1
MGP_LPJ_P0041586 APOBEC_N PF08210 4.8e-83 2
MGP_LPJ_P0041586 APOBEC_C PF05240 4.7e-55 3
MGP_LPJ_P0041586 APOBEC_C PF05240 4.7e-55 4
MGP_LPJ_P0041588 APOBEC_N PF08210 5.2e-83 1
MGP_LPJ_P0041588 APOBEC_N PF08210 5.2e-83 2
MGP_LPJ_P0041588 APOBEC_C PF05240 4.6e-55 3
MGP_LPJ_P0041588 APOBEC_C PF05240 4.6e-55 4
MGP_LPJ_P0041580 APOBEC_N PF08210 9.8e-29 1
MGP_LPJ_P0041580 APOBEC_C PF05240 8.3e-30 2
MGP_LPJ_P0041579 APOBEC_N PF08210 1.5e-28 1
MGP_LPJ_P0041579 APOBEC_C PF05240 6.5e-30 2
MGP_LPJ_P0041589 APOBEC_N PF08210 4.7e-26 1
MGP_LPJ_P0041589 APOBEC_C PF05240 1.2e-25 2
MGP_LPJ_P0041583 APOBEC_N PF08210 2.9e-07 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Apobec3-001 MGP_LPJ_T0041579 750 166aa MGP_LPJ_P0041579"/note="transcript_id=MGP_LPJ_T0041579
- MGP_LPJ_T0041580 817 151aa MGP_LPJ_P0041580"/note="transcript_id=MGP_LPJ_T0041580
- MGP_LPJ_T0041581 607 No protein -
- MGP_LPJ_T0041582 2460 429aa MGP_LPJ_P0041582"/note="transcript_id=MGP_LPJ_T0041582
- MGP_LPJ_T0041583 699 79aa MGP_LPJ_P0041583"/note="transcript_id=MGP_LPJ_T0041583
- MGP_LPJ_T0041584 1217 46aa MGP_LPJ_P0041584"/note="transcript_id=MGP_LPJ_T0041584
- MGP_LPJ_T0041585 1980 407aa MGP_LPJ_P0041585"/note="transcript_id=MGP_LPJ_T0041585
- MGP_LPJ_T0041586 2780 430aa MGP_LPJ_P0041586"/note="transcript_id=MGP_LPJ_T0041586
- MGP_LPJ_T0041587 2246 392aa MGP_LPJ_P0041587"/note="transcript_id=MGP_LPJ_T0041587
- MGP_LPJ_T0041588 1323 440aa MGP_LPJ_P0041588"/note="transcript_id=MGP_LPJ_T0041588
- MGP_LPJ_T0041589 648 85aa MGP_LPJ_P0041589"/note="transcript_id=MGP_LPJ_T0041589
- MGP_LPJ_T0041590 731 No protein -
- MGP_LPJ_T0041591 2082 No protein -
- MGP_LPJ_T0041592 720 No protein -

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_LPJ_G0021989mus_musculus_lpjMGP_LPJ_P007968947.161628.821mus_musculus_lpjMGP_LPJ_P004158824.545515
MGP_LPJ_G0021989mus_musculus_lpjMGP_LPJ_P004796744.196428.125mus_musculus_lpjMGP_LPJ_P004158822.514.3182
MGP_LPJ_G0021989mus_musculus_lpjMGP_LPJ_P007968755.555637.8788mus_musculus_lpjMGP_LPJ_P00415882517.0455

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_LPJ_G0021989mus_musculus_lpjMGP_LPJ_P004158894.318290.2273mus_caroliMGP_CAROLIEiJ_P003900694.318290.2273
MGP_LPJ_G0021989mus_musculus_lpjMGP_LPJ_P0041588100100mus_musculus_balbcjMGP_BALBcJ_P0041727100100
MGP_LPJ_G0021989mus_musculus_lpjMGP_LPJ_P0041588100100mus_musculus_ajMGP_AJ_P0041732100100
MGP_LPJ_G0021989mus_musculus_lpjMGP_LPJ_P004158897.595.9091mus_musculus_c57bl6njMGP_C57BL6NJ_P004220197.595.9091
MGP_LPJ_G0021989mus_musculus_lpjMGP_LPJ_P0041588100100mus_musculus_cbajMGP_CBAJ_P0041369100100
MGP_LPJ_G0021989mus_musculus_lpjMGP_LPJ_P0041588100100mus_musculus_129s1svimjMGP_129S1SvImJ_P0041767100100
MGP_LPJ_G0021989mus_musculus_lpjMGP_LPJ_P0041588100100mus_musculus_c3hhejMGP_C3HHeJ_P0041460100100
MGP_LPJ_G0021989mus_musculus_lpjMGP_LPJ_P0041588100100mus_musculus_fvbnjMGP_FVBNJ_P0041497100100
MGP_LPJ_G0021989mus_musculus_lpjMGP_LPJ_P004158897.595.9091mus_musculusENSMUSP0000013502797.595.9091
MGP_LPJ_G0021989mus_musculus_lpjMGP_LPJ_P0041588100100mus_musculus_akrjMGP_AKRJ_P0041694100100
MGP_LPJ_G0021989mus_musculus_lpjMGP_LPJ_P0041588100100mus_musculus_dba2jMGP_DBA2J_P0041526100100
MGP_LPJ_G0021989mus_musculus_lpjMGP_LPJ_P0041588100100mus_spretusMGP_SPRETEiJ_P0040813100100
MGP_LPJ_G0021989mus_musculus_lpjMGP_LPJ_P004158899.545599.3182mus_musculus_casteijMGP_CASTEiJ_P004153399.545599.3182
MGP_LPJ_G0021989mus_musculus_lpjMGP_LPJ_P004158897.595.9091mus_musculus_nzohlltjMGP_NZOHlLtJ_P004223597.595.9091
MGP_LPJ_G0021989mus_musculus_lpjMGP_LPJ_P004158888.181882.2727mus_pahariMGP_PahariEiJ_P004235987.584681.7156
MGP_LPJ_G0021989mus_musculus_lpjMGP_LPJ_P004158897.596.3636mus_spicilegusENSMSIP0000003471897.596.3636
MGP_LPJ_G0021989mus_musculus_lpjMGP_LPJ_P0041588100100mus_musculus_nodshiltjMGP_NODShiLtJ_P0041468100100
MGP_LPJ_G0021989mus_musculus_lpjMGP_LPJ_P004158897.595.9091mus_musculus_wsbeijMGP_WSBEiJ_P004085797.595.9091
MGP_LPJ_G0021989mus_musculus_lpjMGP_LPJ_P004158879.318270rattus_norvegicusENSRNOP0000009562678.603669.3694
MGP_LPJ_G0021989mus_musculus_lpjMGP_LPJ_P004158897.272795.9091mus_musculus_pwkphjMGP_PWKPhJ_P004111197.272795.9091

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression