Description

Ensembl ID MGP_FVBNJ_G0034896 Gene ID Accession -
Symbol U2surp Alias - Full Name U2 snRNP-associated SURP domain containing
Status Confidence Length 55447 bases Strand Minus strand
Position 9 : 91606878 - 91662324 RNA binding domain RRM_1 , Surp , cwf21 , CID
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_FVBNJ_P0093223 RRM_1 PF00076 1.8e-14 1
MGP_FVBNJ_P0093222 RRM_1 PF00076 5.4e-14 1
MGP_FVBNJ_P0093222 Surp PF01805 2.3e-18 2
MGP_FVBNJ_P0093222 cwf21 PF08312 8.9e-10 3
MGP_FVBNJ_P0093222 CID PF04818 6.1e-08 4
MGP_FVBNJ_P0093221 RRM_1 PF00076 5.7e-14 1
MGP_FVBNJ_P0093221 Surp PF01805 2.5e-18 2
MGP_FVBNJ_P0093221 cwf21 PF08312 9.4e-10 3
MGP_FVBNJ_P0093221 CID PF04818 6.6e-08 4
MGP_FVBNJ_P0093224 RRM_1 PF00076 5.7e-14 1
MGP_FVBNJ_P0093224 Surp PF01805 2.5e-18 2
MGP_FVBNJ_P0093224 cwf21 PF08312 9.4e-10 3
MGP_FVBNJ_P0093224 CID PF04818 6.6e-08 4

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
U2surp-001 MGP_FVBNJ_T0093221 7624 1029aa MGP_FVBNJ_P0093221"/note="transcript_id=MGP_FVBNJ_T0093221
- MGP_FVBNJ_T0093222 3520 985aa MGP_FVBNJ_P0093222"/note="transcript_id=MGP_FVBNJ_T0093222
- MGP_FVBNJ_T0093223 3231 425aa MGP_FVBNJ_P0093223"/note="transcript_id=MGP_FVBNJ_T0093223
- MGP_FVBNJ_T0093224 3087 1028aa MGP_FVBNJ_P0093224"/note="transcript_id=MGP_FVBNJ_T0093224
- MGP_FVBNJ_T0093225 3858 No protein -
- MGP_FVBNJ_T0093226 612 203aa MGP_FVBNJ_P0093226"/note="transcript_id=MGP_FVBNJ_T0093226
- MGP_FVBNJ_T0093227 231 76aa MGP_FVBNJ_P0093227"/note="transcript_id=MGP_FVBNJ_T0093227
- MGP_FVBNJ_T0093228 650 No protein -
- MGP_FVBNJ_T0093229 2846 No protein -

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_FVBNJ_G0034896

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_FVBNJ_G0034896mus_musculus_fvbnjMGP_FVBNJ_P009322117.881417.8814mus_caroliMGP_CAROLIEiJ_P008908790.640490.6404
MGP_FVBNJ_G0034896mus_musculus_fvbnjMGP_FVBNJ_P009322199.902899.9028mus_musculus_129s1svimjMGP_129S1SvImJ_P009364499.902899.9028
MGP_FVBNJ_G0034896mus_musculus_fvbnjMGP_FVBNJ_P009322199.902899.9028mus_musculus_ajMGP_AJ_P009372999.902899.9028
MGP_FVBNJ_G0034896mus_musculus_fvbnjMGP_FVBNJ_P009322199.902899.9028mus_musculus_balbcjMGP_BALBcJ_P009365899.902899.9028
MGP_FVBNJ_G0034896mus_musculus_fvbnjMGP_FVBNJ_P009322199.902899.9028mus_musculus_c57bl6njMGP_C57BL6NJ_P009417099.902899.9028
MGP_FVBNJ_G0034896mus_musculus_fvbnjMGP_FVBNJ_P009322199.902899.9028mus_musculus_dba2jMGP_DBA2J_P009336299.902899.9028
MGP_FVBNJ_G0034896mus_musculus_fvbnjMGP_FVBNJ_P009322199.611399.6113mus_musculus_cbajMGP_CBAJ_P009315499.611399.6113
MGP_FVBNJ_G0034896mus_musculus_fvbnjMGP_FVBNJ_P009322199.902899.9028mus_musculus_c3hhejMGP_C3HHeJ_P009323499.902899.9028
MGP_FVBNJ_G0034896mus_musculus_fvbnjMGP_FVBNJ_P009322199.902899.9028mus_musculus_lpjMGP_LPJ_P009337499.902899.9028
MGP_FVBNJ_G0034896mus_musculus_fvbnjMGP_FVBNJ_P009322199.805699.8056mus_spretusMGP_SPRETEiJ_P009277599.805699.8056
MGP_FVBNJ_G0034896mus_musculus_fvbnjMGP_FVBNJ_P009322199.805699.8056mus_musculus_nzohlltjMGP_NZOHlLtJ_P009449899.805699.8056
MGP_FVBNJ_G0034896mus_musculus_fvbnjMGP_FVBNJ_P009322199.902899.9028mus_musculusENSMUSP0000007860299.902899.9028
MGP_FVBNJ_G0034896mus_musculus_fvbnjMGP_FVBNJ_P009322199.805699.8056mus_musculus_pwkphjMGP_PWKPhJ_P009326499.805699.8056
MGP_FVBNJ_G0034896mus_musculus_fvbnjMGP_FVBNJ_P009322199.708599.7085mus_pahariMGP_PahariEiJ_P002474299.708599.7085
MGP_FVBNJ_G0034896mus_musculus_fvbnjMGP_FVBNJ_P009322198.93198.8338mus_spicilegusENSMSIP0000001988196.128496.034
MGP_FVBNJ_G0034896mus_musculus_fvbnjMGP_FVBNJ_P009322199.514199.5141mus_musculus_casteijMGP_CASTEiJ_P009382999.514199.5141
MGP_FVBNJ_G0034896mus_musculus_fvbnjMGP_FVBNJ_P00932217.385817.38581mus_musculus_nodshiltjMGP_NODShiLtJ_P0093205100100
MGP_FVBNJ_G0034896mus_musculus_fvbnjMGP_FVBNJ_P009322199.902899.9028mus_musculus_wsbeijMGP_WSBEiJ_P009223399.902899.9028
MGP_FVBNJ_G0034896mus_musculus_fvbnjMGP_FVBNJ_P0093221100100mus_musculus_akrjMGP_AKRJ_P0093682100100
MGP_FVBNJ_G0034896mus_musculus_fvbnjMGP_FVBNJ_P009322199.514199.3197rattus_norvegicusENSRNOP0000008393599.514199.3197

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression