RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	MGP_FVBNJ_G0034215	Gene ID		Accession	-
Symbol	Smarca4	Alias	-	Full Name	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
Status	Confidence	Length	88763 bases	Strand	Plus strand
Position	9 : 18018059 - 18106821	RNA binding domain	ResIII , BRK
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
MGP_FVBNJ_P0091011	ResIII	PF04851	2.2e-09	1
MGP_FVBNJ_P0091011	BRK	PF07533	2.1e-17	2
MGP_FVBNJ_P0091010	ResIII	PF04851	3.1e-09	1
MGP_FVBNJ_P0091010	BRK	PF07533	2.7e-17	2
MGP_FVBNJ_P0091008	ResIII	PF04851	3.1e-09	1
MGP_FVBNJ_P0091008	BRK	PF07533	2.7e-17	2
MGP_FVBNJ_P0091009	ResIII	PF04851	3.1e-09	1
MGP_FVBNJ_P0091009	BRK	PF07533	2.7e-17	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
Smarca4-001	MGP_FVBNJ_T0091008	6359	1614aa	MGP_FVBNJ_P0091008"/note="transcript_id=MGP_FVBNJ_T0091008
-	MGP_FVBNJ_T0091009	6346	1614aa	MGP_FVBNJ_P0091009"/note="transcript_id=MGP_FVBNJ_T0091009
-	MGP_FVBNJ_T0091010	5405	1613aa	MGP_FVBNJ_P0091010"/note="transcript_id=MGP_FVBNJ_T0091010
-	MGP_FVBNJ_T0091011	3800	1266aa	MGP_FVBNJ_P0091011"/note="transcript_id=MGP_FVBNJ_T0091011

Gene Model

Click here to download MGP_FVBNJ_G0034215's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download MGP_FVBNJ_G0034215's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_FVBNJ_G0034215	mus_musculus_fvbnj	MGP_FVBNJ_P0051093	85.2152	77.043	mus_musculus_fvbnj	MGP_FVBNJ_P0091008	84.6344	76.518
MGP_FVBNJ_G0034215	mus_musculus_fvbnj	MGP_FVBNJ_P0083998	28.2978	18.1171	mus_musculus_fvbnj	MGP_FVBNJ_P0091008	32.0322	20.5081
MGP_FVBNJ_G0034215	mus_musculus_fvbnj	MGP_FVBNJ_P0064301	22.1701	13.2284	mus_musculus_fvbnj	MGP_FVBNJ_P0091008	41.0161	24.4734
MGP_FVBNJ_G0034215	mus_musculus_fvbnj	MGP_FVBNJ_P0079796	28.5863	16.1123	mus_musculus_fvbnj	MGP_FVBNJ_P0091008	34.0768	19.2069
MGP_FVBNJ_G0034215	mus_musculus_fvbnj	MGP_FVBNJ_P0062353	41.1111	28	mus_musculus_fvbnj	MGP_FVBNJ_P0091008	22.9244	15.6134
MGP_FVBNJ_G0034215	mus_musculus_fvbnj	MGP_FVBNJ_P0066778	38.5542	23.0254	mus_musculus_fvbnj	MGP_FVBNJ_P0091008	17.8439	10.6568
MGP_FVBNJ_G0034215	mus_musculus_fvbnj	MGP_FVBNJ_P0096611	29.3548	16.6129	mus_musculus_fvbnj	MGP_FVBNJ_P0091008	22.5527	12.7633
MGP_FVBNJ_G0034215	mus_musculus_fvbnj	MGP_FVBNJ_P0051368	46.0414	29.1108	mus_musculus_fvbnj	MGP_FVBNJ_P0091008	23.4201	14.8079
MGP_FVBNJ_G0034215	mus_musculus_fvbnj	MGP_FVBNJ_P0093754	24.1473	14.0518	mus_musculus_fvbnj	MGP_FVBNJ_P0091008	21.9331	12.7633
MGP_FVBNJ_G0034215	mus_musculus_fvbnj	MGP_FVBNJ_P0064386	35.4402	20.5418	mus_musculus_fvbnj	MGP_FVBNJ_P0091008	19.4548	11.2763
MGP_FVBNJ_G0034215	mus_musculus_fvbnj	MGP_FVBNJ_P0089487	22.0286	13.2102	mus_musculus_fvbnj	MGP_FVBNJ_P0091008	39.1574	23.482
MGP_FVBNJ_G0034215	mus_musculus_fvbnj	MGP_FVBNJ_P0037136	32.304	19.715	mus_musculus_fvbnj	MGP_FVBNJ_P0091008	16.8525	10.285
MGP_FVBNJ_G0034215	mus_musculus_fvbnj	MGP_FVBNJ_P0024371	16.1888	8.78136	mus_musculus_fvbnj	MGP_FVBNJ_P0091008	16.7906	9.10781
MGP_FVBNJ_G0034215	mus_musculus_fvbnj	MGP_FVBNJ_P0069198	28.5861	16.9057	mus_musculus_fvbnj	MGP_FVBNJ_P0091008	34.5725	20.4461
MGP_FVBNJ_G0034215	mus_musculus_fvbnj	MGP_FVBNJ_P0038622	28.5618	15.8001	mus_musculus_fvbnj	MGP_FVBNJ_P0091008	26.2082	14.4981
MGP_FVBNJ_G0034215	mus_musculus_fvbnj	MGP_FVBNJ_P0077501	37.2184	23.0167	mus_musculus_fvbnj	MGP_FVBNJ_P0091008	23.544	14.5601
MGP_FVBNJ_G0034215	mus_musculus_fvbnj	MGP_FVBNJ_P0056605	30.5872	17.2656	mus_musculus_fvbnj	MGP_FVBNJ_P0091008	21.6233	12.2057
MGP_FVBNJ_G0034215	mus_musculus_fvbnj	MGP_FVBNJ_P0020269	30.989	17.1429	mus_musculus_fvbnj	MGP_FVBNJ_P0091008	17.4721	9.66543
MGP_FVBNJ_G0034215	mus_musculus_fvbnj	MGP_FVBNJ_P0058713	21.6156	12.5415	mus_musculus_fvbnj	MGP_FVBNJ_P0091008	36.3073	21.0657
MGP_FVBNJ_G0034215	mus_musculus_fvbnj	MGP_FVBNJ_P0029739	27.5912	16.1557	mus_musculus_fvbnj	MGP_FVBNJ_P0091008	35.1301	20.57
MGP_FVBNJ_G0034215	mus_musculus_fvbnj	MGP_FVBNJ_P0089111	42.2455	27.117	mus_musculus_fvbnj	MGP_FVBNJ_P0091008	27.5093	17.658
MGP_FVBNJ_G0034215	mus_musculus_fvbnj	MGP_FVBNJ_P0095542	41.0546	26.3653	mus_musculus_fvbnj	MGP_FVBNJ_P0091008	27.0136	17.3482
MGP_FVBNJ_G0034215	mus_musculus_fvbnj	MGP_FVBNJ_P0059887	28.3151	17.6471	mus_musculus_fvbnj	MGP_FVBNJ_P0091008	17.596	10.9665
MGP_FVBNJ_G0034215	mus_musculus_fvbnj	MGP_FVBNJ_P0051310	23.9719	13.2576	mus_musculus_fvbnj	MGP_FVBNJ_P0091008	27.4473	15.1797
MGP_FVBNJ_G0034215	mus_musculus_fvbnj	MGP_FVBNJ_P0072947	17.4629	8.79736	mus_musculus_fvbnj	MGP_FVBNJ_P0091008	32.8377	16.5428
MGP_FVBNJ_G0034215	mus_musculus_fvbnj	MGP_FVBNJ_P0086390	16.5087	9.5078	mus_musculus_fvbnj	MGP_FVBNJ_P0091008	33.4572	19.2689
MGP_FVBNJ_G0034215	mus_musculus_fvbnj	MGP_FVBNJ_P0086394	17.2536	9.88691	mus_musculus_fvbnj	MGP_FVBNJ_P0091008	33.0855	18.9591
MGP_FVBNJ_G0034215	mus_musculus_fvbnj	MGP_FVBNJ_P0021695	26.0992	14.4995	mus_musculus_fvbnj	MGP_FVBNJ_P0091008	17.2862	9.60347
MGP_FVBNJ_G0034215	mus_musculus_fvbnj	MGP_FVBNJ_P0062441	29.5255	15.0264	mus_musculus_fvbnj	MGP_FVBNJ_P0091008	20.8178	10.5948

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_FVBNJ_G0034215	mus_musculus_fvbnj	MGP_FVBNJ_P0091008	100	100	mus_caroli	MGP_CAROLIEiJ_P0086986	100	100
MGP_FVBNJ_G0034215	mus_musculus_fvbnj	MGP_FVBNJ_P0091008	100	100	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0091454	100	100
MGP_FVBNJ_G0034215	mus_musculus_fvbnj	MGP_FVBNJ_P0091008	100	100	mus_musculus_aj	MGP_AJ_P0091529	100	100
MGP_FVBNJ_G0034215	mus_musculus_fvbnj	MGP_FVBNJ_P0091008	100	100	mus_musculus_balbcj	MGP_BALBcJ_P0091455	100	100
MGP_FVBNJ_G0034215	mus_musculus_fvbnj	MGP_FVBNJ_P0091008	100	100	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0091978	100	100
MGP_FVBNJ_G0034215	mus_musculus_fvbnj	MGP_FVBNJ_P0091008	100	100	mus_musculus_dba2j	MGP_DBA2J_P0091173	100	100
MGP_FVBNJ_G0034215	mus_musculus_fvbnj	MGP_FVBNJ_P0091008	100	100	mus_musculus_cbaj	MGP_CBAJ_P0090959	100	100
MGP_FVBNJ_G0034215	mus_musculus_fvbnj	MGP_FVBNJ_P0091008	100	100	mus_musculus_c3hhej	MGP_C3HHeJ_P0091031	100	100
MGP_FVBNJ_G0034215	mus_musculus_fvbnj	MGP_FVBNJ_P0091008	100	100	mus_musculus_lpj	MGP_LPJ_P0091188	100	100
MGP_FVBNJ_G0034215	mus_musculus_fvbnj	MGP_FVBNJ_P0091008	100	100	mus_spretus	MGP_SPRETEiJ_P0090543	100	100
MGP_FVBNJ_G0034215	mus_musculus_fvbnj	MGP_FVBNJ_P0091008	100	100	mus_musculus_nzohlltj	MGP_NZOHlLtJ_P0092295	100	100
MGP_FVBNJ_G0034215	mus_musculus_fvbnj	MGP_FVBNJ_P0091008	100	100	mus_musculus	ENSMUSP00000096547	99.8145	99.8145
MGP_FVBNJ_G0034215	mus_musculus_fvbnj	MGP_FVBNJ_P0091008	100	100	mus_musculus_pwkphj	MGP_PWKPhJ_P0091054	99.8145	99.8145
MGP_FVBNJ_G0034215	mus_musculus_fvbnj	MGP_FVBNJ_P0091008	99.5043	99.5043	mus_pahari	MGP_PahariEiJ_P0022635	99.8756	99.8756
MGP_FVBNJ_G0034215	mus_musculus_fvbnj	MGP_FVBNJ_P0091008	100	99.938	mus_spicilegus	ENSMSIP00000018395	100	99.938
MGP_FVBNJ_G0034215	mus_musculus_fvbnj	MGP_FVBNJ_P0091008	100	100	mus_musculus_casteij	MGP_CASTEiJ_P0091613	99.8145	99.8145
MGP_FVBNJ_G0034215	mus_musculus_fvbnj	MGP_FVBNJ_P0091008	100	100	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0091023	100	100
MGP_FVBNJ_G0034215	mus_musculus_fvbnj	MGP_FVBNJ_P0091008	100	100	mus_musculus_wsbeij	MGP_WSBEiJ_P0090063	99.8145	99.8145
MGP_FVBNJ_G0034215	mus_musculus_fvbnj	MGP_FVBNJ_P0091008	100	100	mus_musculus_akrj	MGP_AKRJ_P0091473	100	100
MGP_FVBNJ_G0034215	mus_musculus_fvbnj	MGP_FVBNJ_P0091008	99.938	99.8761	rattus_norvegicus	ENSRNOP00000013166	97.9356	97.8749

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression