RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	MGP_FVBNJ_G0033689	Gene ID		Accession	-
Symbol	Chd9	Alias	-	Full Name	chromodomain helicase DNA binding protein 9
Status	Confidence	Length	224280 bases	Strand	Plus strand
Position	8 : 86921260 - 87145539	RNA binding domain	ResIII , BRK
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
MGP_FVBNJ_P0089489	ResIII	PF04851	3.6e-06	1
MGP_FVBNJ_P0089489	BRK	PF07533	1.4e-31	2
MGP_FVBNJ_P0089489	BRK	PF07533	1.4e-31	3
MGP_FVBNJ_P0089487	ResIII	PF04851	3.6e-06	1
MGP_FVBNJ_P0089487	BRK	PF07533	1.3e-31	2
MGP_FVBNJ_P0089487	BRK	PF07533	1.3e-31	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
Chd9-001	MGP_FVBNJ_T0089487	11517	2869aa	MGP_FVBNJ_P0089487"/note="transcript_id=MGP_FVBNJ_T0089487
-	MGP_FVBNJ_T0089489	11334	2885aa	MGP_FVBNJ_P0089489"/note="transcript_id=MGP_FVBNJ_T0089489

Gene Model

Click here to download MGP_FVBNJ_G0033689's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download MGP_FVBNJ_G0033689's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_FVBNJ_G0033689	mus_musculus_fvbnj	MGP_FVBNJ_P0051093	40.1747	23.456	mus_musculus_fvbnj	MGP_FVBNJ_P0089487	22.4468	13.1056
MGP_FVBNJ_G0033689	mus_musculus_fvbnj	MGP_FVBNJ_P0083998	39.6278	23.8095	mus_musculus_fvbnj	MGP_FVBNJ_P0089487	25.2353	15.1621
MGP_FVBNJ_G0033689	mus_musculus_fvbnj	MGP_FVBNJ_P0064301	61.42	49.2967	mus_musculus_fvbnj	MGP_FVBNJ_P0089487	63.9247	51.3071
MGP_FVBNJ_G0033689	mus_musculus_fvbnj	MGP_FVBNJ_P0079796	38.5135	23.5447	mus_musculus_fvbnj	MGP_FVBNJ_P0089487	25.8278	15.7895
MGP_FVBNJ_G0033689	mus_musculus_fvbnj	MGP_FVBNJ_P0062353	53.6667	33.8889	mus_musculus_fvbnj	MGP_FVBNJ_P0089487	16.8351	10.6309
MGP_FVBNJ_G0033689	mus_musculus_fvbnj	MGP_FVBNJ_P0066778	40.9639	24.3641	mus_musculus_fvbnj	MGP_FVBNJ_P0089487	10.6657	6.34367
MGP_FVBNJ_G0033689	mus_musculus_fvbnj	MGP_FVBNJ_P0096611	35.4032	20.3226	mus_musculus_fvbnj	MGP_FVBNJ_P0089487	15.3015	8.78355
MGP_FVBNJ_G0033689	mus_musculus_fvbnj	MGP_FVBNJ_P0051368	49.5737	32.6431	mus_musculus_fvbnj	MGP_FVBNJ_P0089487	14.1861	9.34123
MGP_FVBNJ_G0033689	mus_musculus_fvbnj	MGP_FVBNJ_P0093754	30.764	17.0532	mus_musculus_fvbnj	MGP_FVBNJ_P0089487	15.7198	8.71384
MGP_FVBNJ_G0033689	mus_musculus_fvbnj	MGP_FVBNJ_P0064386	35.553	21.219	mus_musculus_fvbnj	MGP_FVBNJ_P0089487	10.9794	6.55281
MGP_FVBNJ_G0033689	mus_musculus_fvbnj	MGP_FVBNJ_P0037136	35.7482	21.3777	mus_musculus_fvbnj	MGP_FVBNJ_P0089487	10.4915	6.27396
MGP_FVBNJ_G0033689	mus_musculus_fvbnj	MGP_FVBNJ_P0024371	16.7264	9.25926	mus_musculus_fvbnj	MGP_FVBNJ_P0089487	9.7595	5.40258
MGP_FVBNJ_G0033689	mus_musculus_fvbnj	MGP_FVBNJ_P0069198	38.1148	24.0266	mus_musculus_fvbnj	MGP_FVBNJ_P0089487	25.9324	16.3472
MGP_FVBNJ_G0033689	mus_musculus_fvbnj	MGP_FVBNJ_P0038622	33.9635	19.6489	mus_musculus_fvbnj	MGP_FVBNJ_P0089487	17.5322	10.1429
MGP_FVBNJ_G0033689	mus_musculus_fvbnj	MGP_FVBNJ_P0077501	36.8266	23.5064	mus_musculus_fvbnj	MGP_FVBNJ_P0089487	13.1056	8.36528
MGP_FVBNJ_G0033689	mus_musculus_fvbnj	MGP_FVBNJ_P0056605	29.2726	16.8273	mus_musculus_fvbnj	MGP_FVBNJ_P0089487	11.6417	6.69223
MGP_FVBNJ_G0033689	mus_musculus_fvbnj	MGP_FVBNJ_P0020269	34.6154	19.011	mus_musculus_fvbnj	MGP_FVBNJ_P0089487	10.9794	6.02998
MGP_FVBNJ_G0033689	mus_musculus_fvbnj	MGP_FVBNJ_P0091008	39.1574	23.482	mus_musculus_fvbnj	MGP_FVBNJ_P0089487	22.0286	13.2102
MGP_FVBNJ_G0033689	mus_musculus_fvbnj	MGP_FVBNJ_P0058713	56.363	43.6001	mus_musculus_fvbnj	MGP_FVBNJ_P0089487	53.259	41.199
MGP_FVBNJ_G0033689	mus_musculus_fvbnj	MGP_FVBNJ_P0029739	36.983	23.6983	mus_musculus_fvbnj	MGP_FVBNJ_P0089487	26.4901	16.9746
MGP_FVBNJ_G0033689	mus_musculus_fvbnj	MGP_FVBNJ_P0089111	50.2379	33.3016	mus_musculus_fvbnj	MGP_FVBNJ_P0089487	18.4036	12.1994
MGP_FVBNJ_G0033689	mus_musculus_fvbnj	MGP_FVBNJ_P0095542	48.3992	31.6384	mus_musculus_fvbnj	MGP_FVBNJ_P0089487	17.9156	11.7114
MGP_FVBNJ_G0033689	mus_musculus_fvbnj	MGP_FVBNJ_P0059887	28.2154	15.5533	mus_musculus_fvbnj	MGP_FVBNJ_P0089487	9.86406	5.43743
MGP_FVBNJ_G0033689	mus_musculus_fvbnj	MGP_FVBNJ_P0051310	23.6472	13.3117	mus_musculus_fvbnj	MGP_FVBNJ_P0089487	15.2318	8.57442
MGP_FVBNJ_G0033689	mus_musculus_fvbnj	MGP_FVBNJ_P0072947	22.1417	11.3674	mus_musculus_fvbnj	MGP_FVBNJ_P0089487	23.4228	12.0251
MGP_FVBNJ_G0033689	mus_musculus_fvbnj	MGP_FVBNJ_P0086390	20.6665	12.3815	mus_musculus_fvbnj	MGP_FVBNJ_P0089487	23.5622	14.1164
MGP_FVBNJ_G0033689	mus_musculus_fvbnj	MGP_FVBNJ_P0086394	21.6478	12.9564	mus_musculus_fvbnj	MGP_FVBNJ_P0089487	23.3531	13.977
MGP_FVBNJ_G0033689	mus_musculus_fvbnj	MGP_FVBNJ_P0021695	34.8924	18.3349	mus_musculus_fvbnj	MGP_FVBNJ_P0089487	13.001	6.83165
MGP_FVBNJ_G0033689	mus_musculus_fvbnj	MGP_FVBNJ_P0062441	28.9982	15.7294	mus_musculus_fvbnj	MGP_FVBNJ_P0089487	11.5023	6.23911

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_FVBNJ_G0033689	mus_musculus_fvbnj	MGP_FVBNJ_P0089487	99.2332	98.6058	mus_caroli	MGP_CAROLIEiJ_P0085486	98.5803	97.9571
MGP_FVBNJ_G0033689	mus_musculus_fvbnj	MGP_FVBNJ_P0089487	100	100	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0089915	100	100
MGP_FVBNJ_G0033689	mus_musculus_fvbnj	MGP_FVBNJ_P0089487	99.8257	99.7909	mus_musculus_aj	MGP_AJ_P0090003	99.2721	99.2374
MGP_FVBNJ_G0033689	mus_musculus_fvbnj	MGP_FVBNJ_P0089487	100	100	mus_musculus_balbcj	MGP_BALBcJ_P0089935	99.4454	99.4454
MGP_FVBNJ_G0033689	mus_musculus_fvbnj	MGP_FVBNJ_P0089487	99.8257	99.7909	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0090455	99.8257	99.7909
MGP_FVBNJ_G0033689	mus_musculus_fvbnj	MGP_FVBNJ_P0089487	100	100	mus_musculus_dba2j	MGP_DBA2J_P0089644	99.4454	99.4454
MGP_FVBNJ_G0033689	mus_musculus_fvbnj	MGP_FVBNJ_P0089487	100	100	mus_musculus_cbaj	MGP_CBAJ_P0089439	99.4454	99.4454
MGP_FVBNJ_G0033689	mus_musculus_fvbnj	MGP_FVBNJ_P0089487	99.8257	99.7909	mus_musculus_c3hhej	MGP_C3HHeJ_P0089503	99.2721	99.2374
MGP_FVBNJ_G0033689	mus_musculus_fvbnj	MGP_FVBNJ_P0089487	100	100	mus_musculus_lpj	MGP_LPJ_P0089680	99.4454	99.4454
MGP_FVBNJ_G0033689	mus_musculus_fvbnj	MGP_FVBNJ_P0089487	99.6166	99.3029	mus_spretus	MGP_SPRETEiJ_P0088990	99.1329	98.8207
MGP_FVBNJ_G0033689	mus_musculus_fvbnj	MGP_FVBNJ_P0089487	100	100	mus_musculus_nzohlltj	MGP_NZOHlLtJ_P0090762	99.4454	99.4454
MGP_FVBNJ_G0033689	mus_musculus_fvbnj	MGP_FVBNJ_P0089487	99.8257	99.7909	mus_musculus	ENSMUSP00000105243	99.2721	99.2374
MGP_FVBNJ_G0033689	mus_musculus_fvbnj	MGP_FVBNJ_P0089487	99.7909	99.7212	mus_musculus_pwkphj	MGP_PWKPhJ_P0089486	99.2374	99.1681
MGP_FVBNJ_G0033689	mus_musculus_fvbnj	MGP_FVBNJ_P0089487	96.9676	95.8871	mus_pahari	MGP_PahariEiJ_P0053740	97.7169	96.628
MGP_FVBNJ_G0033689	mus_musculus_fvbnj	MGP_FVBNJ_P0089487	99.5817	99.3029	mus_spicilegus	ENSMSIP00000026894	99.5817	99.3029
MGP_FVBNJ_G0033689	mus_musculus_fvbnj	MGP_FVBNJ_P0089487	99.7212	99.5469	mus_musculus_casteij	MGP_CASTEiJ_P0090052	99.2025	99.0291
MGP_FVBNJ_G0033689	mus_musculus_fvbnj	MGP_FVBNJ_P0089487	99.9303	99.8257	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0089508	99.9303	99.8257
MGP_FVBNJ_G0033689	mus_musculus_fvbnj	MGP_FVBNJ_P0089487	100	100	mus_musculus_wsbeij	MGP_WSBEiJ_P0088550	100	100
MGP_FVBNJ_G0033689	mus_musculus_fvbnj	MGP_FVBNJ_P0089487	100	100	mus_musculus_akrj	MGP_AKRJ_P0089939	99.4454	99.4454
MGP_FVBNJ_G0033689	mus_musculus_fvbnj	MGP_FVBNJ_P0089487	97.2116	94.6671	rattus_norvegicus	ENSRNOP00000068278	96.7395	94.2074

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression