Description

Ensembl ID MGP_FVBNJ_G0033629 Gene ID Accession -
Symbol Trmt1 Alias - Full Name tRNA methyltransferase 1
Status Confidence Length 14147 bases Strand Plus strand
Position 8 : 80806064 - 80820210 RNA binding domain Met_10 , zf-CCCH , TRM
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_FVBNJ_P0089257 Met_10 PF02475 2.3e-06 1
MGP_FVBNJ_P0089257 TRM PF02005 4.3e-73 2
MGP_FVBNJ_P0089266 Met_10 PF02475 2.4e-06 1
MGP_FVBNJ_P0089266 TRM PF02005 4.8e-64 2
MGP_FVBNJ_P0089269 Met_10 PF02475 1.1e-05 1
MGP_FVBNJ_P0089269 zf-CCCH PF00642 2.3e-06 2
MGP_FVBNJ_P0089269 TRM PF02005 3.6e-139 3
MGP_FVBNJ_P0089258 Met_10 PF02475 1.2e-05 1
MGP_FVBNJ_P0089258 zf-CCCH PF00642 2.5e-06 2
MGP_FVBNJ_P0089258 TRM PF02005 8e-148 3
MGP_FVBNJ_P0089253 Met_10 PF02475 1.2e-05 1
MGP_FVBNJ_P0089253 zf-CCCH PF00642 2.4e-06 2
MGP_FVBNJ_P0089253 TRM PF02005 8.2e-148 3
MGP_FVBNJ_P0089254 Met_10 PF02475 1.2e-05 1
MGP_FVBNJ_P0089254 zf-CCCH PF00642 2.4e-06 2
MGP_FVBNJ_P0089254 TRM PF02005 8.2e-148 3
MGP_FVBNJ_P0089260 Met_10 PF02475 9.1e-05 1
MGP_FVBNJ_P0089260 TRM PF02005 2e-46 2
MGP_FVBNJ_P0089270 Met_10 PF02475 0.00032 1
MGP_FVBNJ_P0089270 TRM PF02005 3e-36 2
MGP_FVBNJ_P0089252 TRM PF02005 5.9e-18 1
MGP_FVBNJ_P0089267 TRM PF02005 6.4e-09 1
MGP_FVBNJ_P0089259 TRM PF02005 8e-09 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Trmt1-020 MGP_FVBNJ_T0089250 1014 No protein -
- MGP_FVBNJ_T0089251 502 No protein -
- MGP_FVBNJ_T0089252 902 173aa MGP_FVBNJ_P0089252"/note="transcript_id=MGP_FVBNJ_T0089252
- MGP_FVBNJ_T0089253 2567 663aa MGP_FVBNJ_P0089253"/note="transcript_id=MGP_FVBNJ_T0089253
- MGP_FVBNJ_T0089254 2138 663aa MGP_FVBNJ_P0089254"/note="transcript_id=MGP_FVBNJ_T0089254
- MGP_FVBNJ_T0089255 384 No protein -
- MGP_FVBNJ_T0089256 871 No protein -
- MGP_FVBNJ_T0089257 921 260aa MGP_FVBNJ_P0089257"/note="transcript_id=MGP_FVBNJ_T0089257
- MGP_FVBNJ_T0089258 2044 656aa MGP_FVBNJ_P0089258"/note="transcript_id=MGP_FVBNJ_T0089258
- MGP_FVBNJ_T0089259 1104 114aa MGP_FVBNJ_P0089259"/note="transcript_id=MGP_FVBNJ_T0089259
- MGP_FVBNJ_T0089260 825 242aa MGP_FVBNJ_P0089260"/note="transcript_id=MGP_FVBNJ_T0089260
- MGP_FVBNJ_T0089261 3643 No protein -
- MGP_FVBNJ_T0089262 980 No protein -
- MGP_FVBNJ_T0089263 665 No protein -
- MGP_FVBNJ_T0089264 435 No protein -
- MGP_FVBNJ_T0089265 421 No protein -
- MGP_FVBNJ_T0089266 817 262aa MGP_FVBNJ_P0089266"/note="transcript_id=MGP_FVBNJ_T0089266
- MGP_FVBNJ_T0089267 810 103aa MGP_FVBNJ_P0089267"/note="transcript_id=MGP_FVBNJ_T0089267
- MGP_FVBNJ_T0089268 883 No protein -
- MGP_FVBNJ_T0089269 2114 634aa MGP_FVBNJ_P0089269"/note="transcript_id=MGP_FVBNJ_T0089269
- MGP_FVBNJ_T0089270 840 221aa MGP_FVBNJ_P0089270"/note="transcript_id=MGP_FVBNJ_T0089270
- MGP_FVBNJ_T0089271 864 No protein -
- MGP_FVBNJ_T0089272 904 No protein -
- MGP_FVBNJ_T0089273 846 No protein -
- MGP_FVBNJ_T0089274 463 No protein -
- MGP_FVBNJ_T0089275 507 67aa MGP_FVBNJ_P0089275"/note="transcript_id=MGP_FVBNJ_T0089275
- MGP_FVBNJ_T0089276 461 No protein -
- MGP_FVBNJ_T0089277 638 204aa MGP_FVBNJ_P0089277"/note="transcript_id=MGP_FVBNJ_T0089277
- MGP_FVBNJ_T0089278 502 No protein -
- MGP_FVBNJ_T0089279 339 No protein -

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_FVBNJ_G0033629mus_musculus_fvbnjMGP_FVBNJ_P002242424.107113.75mus_musculus_fvbnjMGP_FVBNJ_P008925320.36211.6139

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_FVBNJ_G0033629mus_musculus_fvbnjMGP_FVBNJ_P008925398.340997.7376mus_caroliMGP_CAROLIEiJ_P008525498.340997.7376
MGP_FVBNJ_G0033629mus_musculus_fvbnjMGP_FVBNJ_P0089253100100mus_musculus_129s1svimjMGP_129S1SvImJ_P0089683100100
MGP_FVBNJ_G0033629mus_musculus_fvbnjMGP_FVBNJ_P0089253100100mus_musculus_ajMGP_AJ_P0089765100100
MGP_FVBNJ_G0033629mus_musculus_fvbnjMGP_FVBNJ_P0089253100100mus_musculus_balbcjMGP_BALBcJ_P0089700100100
MGP_FVBNJ_G0033629mus_musculus_fvbnjMGP_FVBNJ_P008925399.547599.3967mus_musculus_c57bl6njMGP_C57BL6NJ_P009022199.547599.3967
MGP_FVBNJ_G0033629mus_musculus_fvbnjMGP_FVBNJ_P0089253100100mus_musculus_dba2jMGP_DBA2J_P0089407100100
MGP_FVBNJ_G0033629mus_musculus_fvbnjMGP_FVBNJ_P0089253100100mus_musculus_cbajMGP_CBAJ_P0089202100100
MGP_FVBNJ_G0033629mus_musculus_fvbnjMGP_FVBNJ_P0089253100100mus_musculus_c3hhejMGP_C3HHeJ_P0089269100100
MGP_FVBNJ_G0033629mus_musculus_fvbnjMGP_FVBNJ_P0089253100100mus_musculus_lpjMGP_LPJ_P0089442100100
MGP_FVBNJ_G0033629mus_musculus_fvbnjMGP_FVBNJ_P008925399.245898.7934mus_spretusMGP_SPRETEiJ_P008875599.245898.7934
MGP_FVBNJ_G0033629mus_musculus_fvbnjMGP_FVBNJ_P008925399.547599.3967mus_musculus_nzohlltjMGP_NZOHlLtJ_P009052599.547599.3967
MGP_FVBNJ_G0033629mus_musculus_fvbnjMGP_FVBNJ_P008925399.547599.3967mus_musculusENSMUSP0000000197499.547599.3967
MGP_FVBNJ_G0033629mus_musculus_fvbnjMGP_FVBNJ_P008925399.547599.3967mus_musculus_pwkphjMGP_PWKPhJ_P008924199.547599.3967
MGP_FVBNJ_G0033629mus_musculus_fvbnjMGP_FVBNJ_P008925399.09598.9442mus_spicilegusENSMSIP0000001674099.09598.9442
MGP_FVBNJ_G0033629mus_musculus_fvbnjMGP_FVBNJ_P008925399.849299.5475mus_musculus_casteijMGP_CASTEiJ_P008981799.849299.5475
MGP_FVBNJ_G0033629mus_musculus_fvbnjMGP_FVBNJ_P0089253100100mus_musculus_nodshiltjMGP_NODShiLtJ_P0089274100100
MGP_FVBNJ_G0033629mus_musculus_fvbnjMGP_FVBNJ_P0089253100100mus_musculus_wsbeijMGP_WSBEiJ_P0088314100100
MGP_FVBNJ_G0033629mus_musculus_fvbnjMGP_FVBNJ_P0089253100100mus_musculus_akrjMGP_AKRJ_P0089704100100
MGP_FVBNJ_G0033629mus_musculus_fvbnjMGP_FVBNJ_P008925393.966891.7044rattus_norvegicusENSRNOP0000000394197.648995.2978

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression