RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | MGP_FVBNJ_G0033629 | Gene ID |
|
Accession |
- |
Symbol |
Trmt1 |
Alias |
- |
Full Name |
tRNA methyltransferase 1 |
Status |
Confidence |
Length |
14147 bases |
Strand |
Plus strand |
Position |
8 : 80806064 - 80820210 |
RNA binding domain |
Met_10 , zf-CCCH , TRM |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
MGP_FVBNJ_P0089257 |
Met_10 |
PF02475 |
2.3e-06 |
1 |
MGP_FVBNJ_P0089257 |
TRM |
PF02005 |
4.3e-73 |
2 |
MGP_FVBNJ_P0089266 |
Met_10 |
PF02475 |
2.4e-06 |
1 |
MGP_FVBNJ_P0089266 |
TRM |
PF02005 |
4.8e-64 |
2 |
MGP_FVBNJ_P0089269 |
Met_10 |
PF02475 |
1.1e-05 |
1 |
MGP_FVBNJ_P0089269 |
zf-CCCH |
PF00642 |
2.3e-06 |
2 |
MGP_FVBNJ_P0089269 |
TRM |
PF02005 |
3.6e-139 |
3 |
MGP_FVBNJ_P0089258 |
Met_10 |
PF02475 |
1.2e-05 |
1 |
MGP_FVBNJ_P0089258 |
zf-CCCH |
PF00642 |
2.5e-06 |
2 |
MGP_FVBNJ_P0089258 |
TRM |
PF02005 |
8e-148 |
3 |
MGP_FVBNJ_P0089253 |
Met_10 |
PF02475 |
1.2e-05 |
1 |
MGP_FVBNJ_P0089253 |
zf-CCCH |
PF00642 |
2.4e-06 |
2 |
MGP_FVBNJ_P0089253 |
TRM |
PF02005 |
8.2e-148 |
3 |
MGP_FVBNJ_P0089254 |
Met_10 |
PF02475 |
1.2e-05 |
1 |
MGP_FVBNJ_P0089254 |
zf-CCCH |
PF00642 |
2.4e-06 |
2 |
MGP_FVBNJ_P0089254 |
TRM |
PF02005 |
8.2e-148 |
3 |
MGP_FVBNJ_P0089260 |
Met_10 |
PF02475 |
9.1e-05 |
1 |
MGP_FVBNJ_P0089260 |
TRM |
PF02005 |
2e-46 |
2 |
MGP_FVBNJ_P0089270 |
Met_10 |
PF02475 |
0.00032 |
1 |
MGP_FVBNJ_P0089270 |
TRM |
PF02005 |
3e-36 |
2 |
MGP_FVBNJ_P0089252 |
TRM |
PF02005 |
5.9e-18 |
1 |
MGP_FVBNJ_P0089267 |
TRM |
PF02005 |
6.4e-09 |
1 |
MGP_FVBNJ_P0089259 |
TRM |
PF02005 |
8e-09 |
1 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
Trmt1-020 |
MGP_FVBNJ_T0089250 |
1014 |
No protein |
- |
- |
MGP_FVBNJ_T0089251 |
502 |
No protein |
- |
- |
MGP_FVBNJ_T0089252 |
902 |
173aa |
MGP_FVBNJ_P0089252"/note="transcript_id=MGP_FVBNJ_T0089252 |
- |
MGP_FVBNJ_T0089253 |
2567 |
663aa |
MGP_FVBNJ_P0089253"/note="transcript_id=MGP_FVBNJ_T0089253 |
- |
MGP_FVBNJ_T0089254 |
2138 |
663aa |
MGP_FVBNJ_P0089254"/note="transcript_id=MGP_FVBNJ_T0089254 |
- |
MGP_FVBNJ_T0089255 |
384 |
No protein |
- |
- |
MGP_FVBNJ_T0089256 |
871 |
No protein |
- |
- |
MGP_FVBNJ_T0089257 |
921 |
260aa |
MGP_FVBNJ_P0089257"/note="transcript_id=MGP_FVBNJ_T0089257 |
- |
MGP_FVBNJ_T0089258 |
2044 |
656aa |
MGP_FVBNJ_P0089258"/note="transcript_id=MGP_FVBNJ_T0089258 |
- |
MGP_FVBNJ_T0089259 |
1104 |
114aa |
MGP_FVBNJ_P0089259"/note="transcript_id=MGP_FVBNJ_T0089259 |
- |
MGP_FVBNJ_T0089260 |
825 |
242aa |
MGP_FVBNJ_P0089260"/note="transcript_id=MGP_FVBNJ_T0089260 |
- |
MGP_FVBNJ_T0089261 |
3643 |
No protein |
- |
- |
MGP_FVBNJ_T0089262 |
980 |
No protein |
- |
- |
MGP_FVBNJ_T0089263 |
665 |
No protein |
- |
- |
MGP_FVBNJ_T0089264 |
435 |
No protein |
- |
- |
MGP_FVBNJ_T0089265 |
421 |
No protein |
- |
- |
MGP_FVBNJ_T0089266 |
817 |
262aa |
MGP_FVBNJ_P0089266"/note="transcript_id=MGP_FVBNJ_T0089266 |
- |
MGP_FVBNJ_T0089267 |
810 |
103aa |
MGP_FVBNJ_P0089267"/note="transcript_id=MGP_FVBNJ_T0089267 |
- |
MGP_FVBNJ_T0089268 |
883 |
No protein |
- |
- |
MGP_FVBNJ_T0089269 |
2114 |
634aa |
MGP_FVBNJ_P0089269"/note="transcript_id=MGP_FVBNJ_T0089269 |
- |
MGP_FVBNJ_T0089270 |
840 |
221aa |
MGP_FVBNJ_P0089270"/note="transcript_id=MGP_FVBNJ_T0089270 |
- |
MGP_FVBNJ_T0089271 |
864 |
No protein |
- |
- |
MGP_FVBNJ_T0089272 |
904 |
No protein |
- |
- |
MGP_FVBNJ_T0089273 |
846 |
No protein |
- |
- |
MGP_FVBNJ_T0089274 |
463 |
No protein |
- |
- |
MGP_FVBNJ_T0089275 |
507 |
67aa |
MGP_FVBNJ_P0089275"/note="transcript_id=MGP_FVBNJ_T0089275 |
- |
MGP_FVBNJ_T0089276 |
461 |
No protein |
- |
- |
MGP_FVBNJ_T0089277 |
638 |
204aa |
MGP_FVBNJ_P0089277"/note="transcript_id=MGP_FVBNJ_T0089277 |
- |
MGP_FVBNJ_T0089278 |
502 |
No protein |
- |
- |
MGP_FVBNJ_T0089279 |
339 |
No protein |
- |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_FVBNJ_G0033629 | mus_musculus_fvbnj | MGP_FVBNJ_P0022424 | 24.1071 | 13.75 | mus_musculus_fvbnj | MGP_FVBNJ_P0089253 | 20.362 | 11.6139 |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_FVBNJ_G0033629 | mus_musculus_fvbnj | MGP_FVBNJ_P0089253 | 98.3409 | 97.7376 | mus_caroli | MGP_CAROLIEiJ_P0085254 | 98.3409 | 97.7376 |
MGP_FVBNJ_G0033629 | mus_musculus_fvbnj | MGP_FVBNJ_P0089253 | 100 | 100 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0089683 | 100 | 100 |
MGP_FVBNJ_G0033629 | mus_musculus_fvbnj | MGP_FVBNJ_P0089253 | 100 | 100 | mus_musculus_aj | MGP_AJ_P0089765 | 100 | 100 |
MGP_FVBNJ_G0033629 | mus_musculus_fvbnj | MGP_FVBNJ_P0089253 | 100 | 100 | mus_musculus_balbcj | MGP_BALBcJ_P0089700 | 100 | 100 |
MGP_FVBNJ_G0033629 | mus_musculus_fvbnj | MGP_FVBNJ_P0089253 | 99.5475 | 99.3967 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0090221 | 99.5475 | 99.3967 |
MGP_FVBNJ_G0033629 | mus_musculus_fvbnj | MGP_FVBNJ_P0089253 | 100 | 100 | mus_musculus_dba2j | MGP_DBA2J_P0089407 | 100 | 100 |
MGP_FVBNJ_G0033629 | mus_musculus_fvbnj | MGP_FVBNJ_P0089253 | 100 | 100 | mus_musculus_cbaj | MGP_CBAJ_P0089202 | 100 | 100 |
MGP_FVBNJ_G0033629 | mus_musculus_fvbnj | MGP_FVBNJ_P0089253 | 100 | 100 | mus_musculus_c3hhej | MGP_C3HHeJ_P0089269 | 100 | 100 |
MGP_FVBNJ_G0033629 | mus_musculus_fvbnj | MGP_FVBNJ_P0089253 | 100 | 100 | mus_musculus_lpj | MGP_LPJ_P0089442 | 100 | 100 |
MGP_FVBNJ_G0033629 | mus_musculus_fvbnj | MGP_FVBNJ_P0089253 | 99.2458 | 98.7934 | mus_spretus | MGP_SPRETEiJ_P0088755 | 99.2458 | 98.7934 |
MGP_FVBNJ_G0033629 | mus_musculus_fvbnj | MGP_FVBNJ_P0089253 | 99.5475 | 99.3967 | mus_musculus_nzohlltj | MGP_NZOHlLtJ_P0090525 | 99.5475 | 99.3967 |
MGP_FVBNJ_G0033629 | mus_musculus_fvbnj | MGP_FVBNJ_P0089253 | 99.5475 | 99.3967 | mus_musculus | ENSMUSP00000001974 | 99.5475 | 99.3967 |
MGP_FVBNJ_G0033629 | mus_musculus_fvbnj | MGP_FVBNJ_P0089253 | 99.5475 | 99.3967 | mus_musculus_pwkphj | MGP_PWKPhJ_P0089241 | 99.5475 | 99.3967 |
MGP_FVBNJ_G0033629 | mus_musculus_fvbnj | MGP_FVBNJ_P0089253 | 99.095 | 98.9442 | mus_spicilegus | ENSMSIP00000016740 | 99.095 | 98.9442 |
MGP_FVBNJ_G0033629 | mus_musculus_fvbnj | MGP_FVBNJ_P0089253 | 99.8492 | 99.5475 | mus_musculus_casteij | MGP_CASTEiJ_P0089817 | 99.8492 | 99.5475 |
MGP_FVBNJ_G0033629 | mus_musculus_fvbnj | MGP_FVBNJ_P0089253 | 100 | 100 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0089274 | 100 | 100 |
MGP_FVBNJ_G0033629 | mus_musculus_fvbnj | MGP_FVBNJ_P0089253 | 100 | 100 | mus_musculus_wsbeij | MGP_WSBEiJ_P0088314 | 100 | 100 |
MGP_FVBNJ_G0033629 | mus_musculus_fvbnj | MGP_FVBNJ_P0089253 | 100 | 100 | mus_musculus_akrj | MGP_AKRJ_P0089704 | 100 | 100 |
MGP_FVBNJ_G0033629 | mus_musculus_fvbnj | MGP_FVBNJ_P0089253 | 93.9668 | 91.7044 | rattus_norvegicus | ENSRNOP00000003941 | 97.6489 | 95.2978 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |