RBPWorld - a comprehensive database of RNA Binding Proteins

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Description

Ensembl ID	MGP_FVBNJ_G0033546	Gene ID		Accession	-
Symbol	Cherp	Alias	-	Full Name	calcium homeostasis endoplasmic reticulum protein
Status	Confidence	Length	16904 bases	Strand	Minus strand
Position	8 : 68819809 - 68836712	RNA binding domain	G-patch , Surp , CID
Summary	N.A.

RNA binding domains (RBDs)

Search:

Protein	Domain	Pfam ID	E-value	Domain number
MGP_FVBNJ_P0089014	G-patch	PF01585	7.7e-12	1
MGP_FVBNJ_P0089014	Surp	PF01805	1.5e-15	2
MGP_FVBNJ_P0089014	CID	PF04818	4e-26	3

Showing 1 to 3 of 3 entries

Transcripts

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Name	Transcript ID	bp	Protein	Translation ID
Cherp-001	MGP_FVBNJ_T0089014	3782	934aa	MGP_FVBNJ_P0089014"/note="transcript_id=MGP_FVBNJ_T0089014

Showing 1 to 1 of 1 entries

Gene Model

Click here to download MGP_FVBNJ_G0033546's gene model file

Protein-Protein Interaction (PPI)

Click here to download MGP_FVBNJ_G0033546's PPI file

Orthologs

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Search:

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_FVBNJ_G0033546	mus_musculus_fvbnj	MGP_FVBNJ_P0089014	99.8929	99.8929	mus_caroli	MGP_CAROLIEiJ_P0085011	99.7861	99.7861
MGP_FVBNJ_G0033546	mus_musculus_fvbnj	MGP_FVBNJ_P0089014	100	100	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0089444	100	100
MGP_FVBNJ_G0033546	mus_musculus_fvbnj	MGP_FVBNJ_P0089014	99.8929	99.8929	mus_musculus_aj	MGP_AJ_P0089526	99.6795	99.6795
MGP_FVBNJ_G0033546	mus_musculus_fvbnj	MGP_FVBNJ_P0089014	100	100	mus_musculus_balbcj	MGP_BALBcJ_P0089462	100	100
MGP_FVBNJ_G0033546	mus_musculus_fvbnj	MGP_FVBNJ_P0089014	99.8929	99.8929	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0089982	99.4669	99.4669
MGP_FVBNJ_G0033546	mus_musculus_fvbnj	MGP_FVBNJ_P0089014	100	100	mus_musculus_dba2j	MGP_DBA2J_P0089170	100	100
MGP_FVBNJ_G0033546	mus_musculus_fvbnj	MGP_FVBNJ_P0089014	100	100	mus_musculus_cbaj	MGP_CBAJ_P0088977	100	100
MGP_FVBNJ_G0033546	mus_musculus_fvbnj	MGP_FVBNJ_P0089014	100	100	mus_musculus_c3hhej	MGP_C3HHeJ_P0089027	100	100
MGP_FVBNJ_G0033546	mus_musculus_fvbnj	MGP_FVBNJ_P0089014	100	100	mus_musculus_lpj	MGP_LPJ_P0089198	100	100
MGP_FVBNJ_G0033546	mus_musculus_fvbnj	MGP_FVBNJ_P0089014	99.6788	99.6788	mus_spretus	MGP_SPRETEiJ_P0088518	99.7856	99.7856

Showing 1 to 10 of 20 entries

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Contents

Description
RBDs
Transcripts
Gene Model
PPI
Orthologs