Description

Ensembl ID MGP_FVBNJ_G0033464 Gene ID Accession -
Symbol Upf1 Alias - Full Name UPF1 regulator of nonsense transcripts homolog (yeast)
Status Confidence Length 23591 bases Strand Minus strand
Position 8 : 66555727 - 66579317 RNA binding domain ResIII , UPF1_1B_dom , UPF1_Zn_bind
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_FVBNJ_P0088760 ResIII PF04851 4.4e-05 1
MGP_FVBNJ_P0088760 UPF1_1B_dom PF18141 3.3e-32 2
MGP_FVBNJ_P0088760 UPF1_Zn_bind PF09416 3.8e-77 3
MGP_FVBNJ_P0088759 ResIII PF04851 4.7e-05 1
MGP_FVBNJ_P0088759 UPF1_1B_dom PF18141 1e-28 2
MGP_FVBNJ_P0088759 UPF1_Zn_bind PF09416 3.9e-77 3

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Upf1-001 MGP_FVBNJ_T0088759 4585 1124aa MGP_FVBNJ_P0088759"/note="transcript_id=MGP_FVBNJ_T0088759
- MGP_FVBNJ_T0088760 3442 1113aa MGP_FVBNJ_P0088760"/note="transcript_id=MGP_FVBNJ_T0088760

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_FVBNJ_G0033464mus_musculus_fvbnjMGP_FVBNJ_P005642618.163410.1283mus_musculus_fvbnjMGP_FVBNJ_P008875923.932413.3452
MGP_FVBNJ_G0033464mus_musculus_fvbnjMGP_FVBNJ_P006335524.154614.7611mus_musculus_fvbnjMGP_FVBNJ_P008875940.035624.4662
MGP_FVBNJ_G0033464mus_musculus_fvbnjMGP_FVBNJ_P005332016.32659.41043mus_musculus_fvbnjMGP_FVBNJ_P008875938.434222.153
MGP_FVBNJ_G0033464mus_musculus_fvbnjMGP_FVBNJ_P003292715.62348.39695mus_musculus_fvbnjMGP_FVBNJ_P008875927.313214.6797
MGP_FVBNJ_G0033464mus_musculus_fvbnjMGP_FVBNJ_P006264223.026913.2776mus_musculus_fvbnjMGP_FVBNJ_P008875922.064112.7224
MGP_FVBNJ_G0033464mus_musculus_fvbnjMGP_FVBNJ_P004995339.879225.9819mus_musculus_fvbnjMGP_FVBNJ_P008875935.231322.9537
MGP_FVBNJ_G0033464mus_musculus_fvbnjMGP_FVBNJ_P009567131.779716.9492mus_musculus_fvbnjMGP_FVBNJ_P00887596.67263.55872
MGP_FVBNJ_G0033464mus_musculus_fvbnjMGP_FVBNJ_P009566730.322618.0645mus_musculus_fvbnjMGP_FVBNJ_P00887594.181492.4911
MGP_FVBNJ_G0033464mus_musculus_fvbnjMGP_FVBNJ_P005910015.87229.27187mus_musculus_fvbnjMGP_FVBNJ_P008875926.957315.7473
MGP_FVBNJ_G0033464mus_musculus_fvbnjMGP_FVBNJ_P004187923.051413.1012mus_musculus_fvbnjMGP_FVBNJ_P008875924.733114.0569
MGP_FVBNJ_G0033464mus_musculus_fvbnjMGP_FVBNJ_P002527526.459515.1601mus_musculus_fvbnjMGP_FVBNJ_P00887592514.3238
MGP_FVBNJ_G0033464mus_musculus_fvbnjMGP_FVBNJ_P005953510.57245.92593mus_musculus_fvbnjMGP_FVBNJ_P008875927.935915.6584

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_FVBNJ_G0033464mus_musculus_fvbnjMGP_FVBNJ_P0088759100100mus_caroliMGP_CAROLIEiJ_P0084765100100
MGP_FVBNJ_G0033464mus_musculus_fvbnjMGP_FVBNJ_P0088759100100mus_musculus_129s1svimjMGP_129S1SvImJ_P0089189100100
MGP_FVBNJ_G0033464mus_musculus_fvbnjMGP_FVBNJ_P0088759100100mus_musculus_ajMGP_AJ_P0089275100100
MGP_FVBNJ_G0033464mus_musculus_fvbnjMGP_FVBNJ_P0088759100100mus_musculus_balbcjMGP_BALBcJ_P0089217100100
MGP_FVBNJ_G0033464mus_musculus_fvbnjMGP_FVBNJ_P0088759100100mus_musculus_c57bl6njMGP_C57BL6NJ_P0089734100100
MGP_FVBNJ_G0033464mus_musculus_fvbnjMGP_FVBNJ_P0088759100100mus_musculus_dba2jMGP_DBA2J_P0088922100100
MGP_FVBNJ_G0033464mus_musculus_fvbnjMGP_FVBNJ_P0088759100100mus_musculus_cbajMGP_CBAJ_P0088730100100
MGP_FVBNJ_G0033464mus_musculus_fvbnjMGP_FVBNJ_P0088759100100mus_musculus_c3hhejMGP_C3HHeJ_P0088779100100
MGP_FVBNJ_G0033464mus_musculus_fvbnjMGP_FVBNJ_P0088759100100mus_musculus_lpjMGP_LPJ_P0088947100100
MGP_FVBNJ_G0033464mus_musculus_fvbnjMGP_FVBNJ_P0088759100100mus_spretusMGP_SPRETEiJ_P0088267100100
MGP_FVBNJ_G0033464mus_musculus_fvbnjMGP_FVBNJ_P0088759100100mus_musculus_nzohlltjMGP_NZOHlLtJ_P0090031100100
MGP_FVBNJ_G0033464mus_musculus_fvbnjMGP_FVBNJ_P0088759100100mus_musculusENSMUSP00000075089100100
MGP_FVBNJ_G0033464mus_musculus_fvbnjMGP_FVBNJ_P0088759100100mus_musculus_pwkphjMGP_PWKPhJ_P0088742100100
MGP_FVBNJ_G0033464mus_musculus_fvbnjMGP_FVBNJ_P0088759100100mus_pahariMGP_PahariEiJ_P0047646100100
MGP_FVBNJ_G0033464mus_musculus_fvbnjMGP_FVBNJ_P0088759100100mus_spicilegusENSMSIP00000038476100100
MGP_FVBNJ_G0033464mus_musculus_fvbnjMGP_FVBNJ_P0088759100100mus_musculus_casteijMGP_CASTEiJ_P0089329100100
MGP_FVBNJ_G0033464mus_musculus_fvbnjMGP_FVBNJ_P0088759100100mus_musculus_nodshiltjMGP_NODShiLtJ_P0088793100100
MGP_FVBNJ_G0033464mus_musculus_fvbnjMGP_FVBNJ_P0088759100100mus_musculus_wsbeijMGP_WSBEiJ_P0087819100100
MGP_FVBNJ_G0033464mus_musculus_fvbnjMGP_FVBNJ_P0088759100100mus_musculus_akrjMGP_AKRJ_P0089205100100
MGP_FVBNJ_G0033464mus_musculus_fvbnjMGP_FVBNJ_P008875910099.911rattus_norvegicusENSRNOP0000007590510099.911

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression