Description

Ensembl ID MGP_FVBNJ_G0032760 Gene ID Accession -
Symbol Atxn2l Alias - Full Name ataxin 2-like
Status Confidence Length 11729 bases Strand Minus strand
Position 7 : 125136898 - 125148626 RNA binding domain LsmAD , PAM2 , SM-ATX
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_FVBNJ_P0086063 LsmAD PF06741 4.7e-17 1
MGP_FVBNJ_P0086063 PAM2 PF07145 2.2e-05 2
MGP_FVBNJ_P0086063 SM-ATX PF14438 5.3e-17 3
MGP_FVBNJ_P0086060 LsmAD PF06741 5.9e-17 1
MGP_FVBNJ_P0086060 PAM2 PF07145 2.6e-05 2
MGP_FVBNJ_P0086060 SM-ATX PF14438 1.5e-18 3
MGP_FVBNJ_P0086059 LsmAD PF06741 6.4e-17 1
MGP_FVBNJ_P0086059 PAM2 PF07145 2.7e-05 2
MGP_FVBNJ_P0086059 SM-ATX PF14438 1.6e-18 3
MGP_FVBNJ_P0086061 LsmAD PF06741 6.9e-17 1
MGP_FVBNJ_P0086061 PAM2 PF07145 2.9e-05 2
MGP_FVBNJ_P0086061 SM-ATX PF14438 1.7e-18 3
MGP_FVBNJ_P0086064 SM-ATX PF14438 1.5e-19 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Atxn2l-001 MGP_FVBNJ_T0086059 3852 1049aa MGP_FVBNJ_P0086059"/note="transcript_id=MGP_FVBNJ_T0086059
- MGP_FVBNJ_T0086060 4022 994aa MGP_FVBNJ_P0086060"/note="transcript_id=MGP_FVBNJ_T0086060
- MGP_FVBNJ_T0086061 3893 1096aa MGP_FVBNJ_P0086061"/note="transcript_id=MGP_FVBNJ_T0086061
- MGP_FVBNJ_T0086062 503 144aa MGP_FVBNJ_P0086062"/note="transcript_id=MGP_FVBNJ_T0086062
- MGP_FVBNJ_T0086063 2745 863aa MGP_FVBNJ_P0086063"/note="transcript_id=MGP_FVBNJ_T0086063
- MGP_FVBNJ_T0086064 682 218aa MGP_FVBNJ_P0086064"/note="transcript_id=MGP_FVBNJ_T0086064

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_FVBNJ_G0032760mus_musculus_fvbnjMGP_FVBNJ_P007367153.803339.4249mus_musculus_fvbnjMGP_FVBNJ_P008606152.919738.7774

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_FVBNJ_G0032760mus_musculus_fvbnjMGP_FVBNJ_P008606199.452699.0876mus_caroliMGP_CAROLIEiJ_P008214499.543499.1781
MGP_FVBNJ_G0032760mus_musculus_fvbnjMGP_FVBNJ_P0086061100100mus_musculus_129s1svimjMGP_129S1SvImJ_P0086477100100
MGP_FVBNJ_G0032760mus_musculus_fvbnjMGP_FVBNJ_P0086061100100mus_musculus_ajMGP_AJ_P0086560100100
MGP_FVBNJ_G0032760mus_musculus_fvbnjMGP_FVBNJ_P0086061100100mus_musculus_balbcjMGP_BALBcJ_P0086522100100
MGP_FVBNJ_G0032760mus_musculus_fvbnjMGP_FVBNJ_P0086061100100mus_musculus_c57bl6njMGP_C57BL6NJ_P0087017100100
MGP_FVBNJ_G0032760mus_musculus_fvbnjMGP_FVBNJ_P0086061100100mus_musculus_dba2jMGP_DBA2J_P0086221100100
MGP_FVBNJ_G0032760mus_musculus_fvbnjMGP_FVBNJ_P0086061100100mus_musculus_cbajMGP_CBAJ_P0086024100100
MGP_FVBNJ_G0032760mus_musculus_fvbnjMGP_FVBNJ_P0086061100100mus_musculus_c3hhejMGP_C3HHeJ_P0086082100100
MGP_FVBNJ_G0032760mus_musculus_fvbnjMGP_FVBNJ_P0086061100100mus_musculus_lpjMGP_LPJ_P0086255100100
MGP_FVBNJ_G0032760mus_musculus_fvbnjMGP_FVBNJ_P008606199.908899.7263mus_spretusMGP_SPRETEiJ_P008554299.908899.7263
MGP_FVBNJ_G0032760mus_musculus_fvbnjMGP_FVBNJ_P0086061100100mus_musculus_nzohlltjMGP_NZOHlLtJ_P0087308100100
MGP_FVBNJ_G0032760mus_musculus_fvbnjMGP_FVBNJ_P0086061100100mus_musculusENSMUSP00000146023100100
MGP_FVBNJ_G0032760mus_musculus_fvbnjMGP_FVBNJ_P0086061100100mus_musculus_pwkphjMGP_PWKPhJ_P0086012100100
MGP_FVBNJ_G0032760mus_musculus_fvbnjMGP_FVBNJ_P008606199.361398.9051mus_pahariMGP_PahariEiJ_P001893399.361398.9051
MGP_FVBNJ_G0032760mus_musculus_fvbnjMGP_FVBNJ_P008606199.908899.7263mus_spicilegusENSMSIP0000001938899.908899.7263
MGP_FVBNJ_G0032760mus_musculus_fvbnjMGP_FVBNJ_P008606199.908899.8175mus_musculus_casteijMGP_CASTEiJ_P008660199.908899.8175
MGP_FVBNJ_G0032760mus_musculus_fvbnjMGP_FVBNJ_P0086061100100mus_musculus_nodshiltjMGP_NODShiLtJ_P0086101100100
MGP_FVBNJ_G0032760mus_musculus_fvbnjMGP_FVBNJ_P0086061100100mus_musculus_wsbeijMGP_WSBEiJ_P0085122100100
MGP_FVBNJ_G0032760mus_musculus_fvbnjMGP_FVBNJ_P0086061100100mus_musculus_akrjMGP_AKRJ_P0086499100100
MGP_FVBNJ_G0032760mus_musculus_fvbnjMGP_FVBNJ_P008606197.080396.4416rattus_norvegicusENSRNOP0000007061698.701398.0519

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression