RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | MGP_FVBNJ_G0032760 | Gene ID |
|
Accession |
- |
Symbol |
Atxn2l |
Alias |
- |
Full Name |
ataxin 2-like |
Status |
Confidence |
Length |
11729 bases |
Strand |
Minus strand |
Position |
7 : 125136898 - 125148626 |
RNA binding domain |
LsmAD , PAM2 , SM-ATX |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
MGP_FVBNJ_P0086063 |
LsmAD |
PF06741 |
4.7e-17 |
1 |
MGP_FVBNJ_P0086063 |
PAM2 |
PF07145 |
2.2e-05 |
2 |
MGP_FVBNJ_P0086063 |
SM-ATX |
PF14438 |
5.3e-17 |
3 |
MGP_FVBNJ_P0086060 |
LsmAD |
PF06741 |
5.9e-17 |
1 |
MGP_FVBNJ_P0086060 |
PAM2 |
PF07145 |
2.6e-05 |
2 |
MGP_FVBNJ_P0086060 |
SM-ATX |
PF14438 |
1.5e-18 |
3 |
MGP_FVBNJ_P0086059 |
LsmAD |
PF06741 |
6.4e-17 |
1 |
MGP_FVBNJ_P0086059 |
PAM2 |
PF07145 |
2.7e-05 |
2 |
MGP_FVBNJ_P0086059 |
SM-ATX |
PF14438 |
1.6e-18 |
3 |
MGP_FVBNJ_P0086061 |
LsmAD |
PF06741 |
6.9e-17 |
1 |
MGP_FVBNJ_P0086061 |
PAM2 |
PF07145 |
2.9e-05 |
2 |
MGP_FVBNJ_P0086061 |
SM-ATX |
PF14438 |
1.7e-18 |
3 |
MGP_FVBNJ_P0086064 |
SM-ATX |
PF14438 |
1.5e-19 |
1 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
Atxn2l-001 |
MGP_FVBNJ_T0086059 |
3852 |
1049aa |
MGP_FVBNJ_P0086059"/note="transcript_id=MGP_FVBNJ_T0086059 |
- |
MGP_FVBNJ_T0086060 |
4022 |
994aa |
MGP_FVBNJ_P0086060"/note="transcript_id=MGP_FVBNJ_T0086060 |
- |
MGP_FVBNJ_T0086061 |
3893 |
1096aa |
MGP_FVBNJ_P0086061"/note="transcript_id=MGP_FVBNJ_T0086061 |
- |
MGP_FVBNJ_T0086062 |
503 |
144aa |
MGP_FVBNJ_P0086062"/note="transcript_id=MGP_FVBNJ_T0086062 |
- |
MGP_FVBNJ_T0086063 |
2745 |
863aa |
MGP_FVBNJ_P0086063"/note="transcript_id=MGP_FVBNJ_T0086063 |
- |
MGP_FVBNJ_T0086064 |
682 |
218aa |
MGP_FVBNJ_P0086064"/note="transcript_id=MGP_FVBNJ_T0086064 |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_FVBNJ_G0032760 | mus_musculus_fvbnj | MGP_FVBNJ_P0073671 | 53.8033 | 39.4249 | mus_musculus_fvbnj | MGP_FVBNJ_P0086061 | 52.9197 | 38.7774 |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_FVBNJ_G0032760 | mus_musculus_fvbnj | MGP_FVBNJ_P0086061 | 99.4526 | 99.0876 | mus_caroli | MGP_CAROLIEiJ_P0082144 | 99.5434 | 99.1781 |
MGP_FVBNJ_G0032760 | mus_musculus_fvbnj | MGP_FVBNJ_P0086061 | 100 | 100 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0086477 | 100 | 100 |
MGP_FVBNJ_G0032760 | mus_musculus_fvbnj | MGP_FVBNJ_P0086061 | 100 | 100 | mus_musculus_aj | MGP_AJ_P0086560 | 100 | 100 |
MGP_FVBNJ_G0032760 | mus_musculus_fvbnj | MGP_FVBNJ_P0086061 | 100 | 100 | mus_musculus_balbcj | MGP_BALBcJ_P0086522 | 100 | 100 |
MGP_FVBNJ_G0032760 | mus_musculus_fvbnj | MGP_FVBNJ_P0086061 | 100 | 100 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0087017 | 100 | 100 |
MGP_FVBNJ_G0032760 | mus_musculus_fvbnj | MGP_FVBNJ_P0086061 | 100 | 100 | mus_musculus_dba2j | MGP_DBA2J_P0086221 | 100 | 100 |
MGP_FVBNJ_G0032760 | mus_musculus_fvbnj | MGP_FVBNJ_P0086061 | 100 | 100 | mus_musculus_cbaj | MGP_CBAJ_P0086024 | 100 | 100 |
MGP_FVBNJ_G0032760 | mus_musculus_fvbnj | MGP_FVBNJ_P0086061 | 100 | 100 | mus_musculus_c3hhej | MGP_C3HHeJ_P0086082 | 100 | 100 |
MGP_FVBNJ_G0032760 | mus_musculus_fvbnj | MGP_FVBNJ_P0086061 | 100 | 100 | mus_musculus_lpj | MGP_LPJ_P0086255 | 100 | 100 |
MGP_FVBNJ_G0032760 | mus_musculus_fvbnj | MGP_FVBNJ_P0086061 | 99.9088 | 99.7263 | mus_spretus | MGP_SPRETEiJ_P0085542 | 99.9088 | 99.7263 |
MGP_FVBNJ_G0032760 | mus_musculus_fvbnj | MGP_FVBNJ_P0086061 | 100 | 100 | mus_musculus_nzohlltj | MGP_NZOHlLtJ_P0087308 | 100 | 100 |
MGP_FVBNJ_G0032760 | mus_musculus_fvbnj | MGP_FVBNJ_P0086061 | 100 | 100 | mus_musculus | ENSMUSP00000146023 | 100 | 100 |
MGP_FVBNJ_G0032760 | mus_musculus_fvbnj | MGP_FVBNJ_P0086061 | 100 | 100 | mus_musculus_pwkphj | MGP_PWKPhJ_P0086012 | 100 | 100 |
MGP_FVBNJ_G0032760 | mus_musculus_fvbnj | MGP_FVBNJ_P0086061 | 99.3613 | 98.9051 | mus_pahari | MGP_PahariEiJ_P0018933 | 99.3613 | 98.9051 |
MGP_FVBNJ_G0032760 | mus_musculus_fvbnj | MGP_FVBNJ_P0086061 | 99.9088 | 99.7263 | mus_spicilegus | ENSMSIP00000019388 | 99.9088 | 99.7263 |
MGP_FVBNJ_G0032760 | mus_musculus_fvbnj | MGP_FVBNJ_P0086061 | 99.9088 | 99.8175 | mus_musculus_casteij | MGP_CASTEiJ_P0086601 | 99.9088 | 99.8175 |
MGP_FVBNJ_G0032760 | mus_musculus_fvbnj | MGP_FVBNJ_P0086061 | 100 | 100 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0086101 | 100 | 100 |
MGP_FVBNJ_G0032760 | mus_musculus_fvbnj | MGP_FVBNJ_P0086061 | 100 | 100 | mus_musculus_wsbeij | MGP_WSBEiJ_P0085122 | 100 | 100 |
MGP_FVBNJ_G0032760 | mus_musculus_fvbnj | MGP_FVBNJ_P0086061 | 100 | 100 | mus_musculus_akrj | MGP_AKRJ_P0086499 | 100 | 100 |
MGP_FVBNJ_G0032760 | mus_musculus_fvbnj | MGP_FVBNJ_P0086061 | 97.0803 | 96.4416 | rattus_norvegicus | ENSRNOP00000070616 | 98.7013 | 98.0519 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |