Description

Ensembl ID MGP_FVBNJ_G0032666 Gene ID Accession -
Symbol Rps13 Alias - Full Name ribosomal protein S13
Status Confidence Length 2705 bases Strand Minus strand
Position 7 : 114956250 - 114958954 RNA binding domain Ribosomal_S13_N , Ribosomal_S15
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_FVBNJ_P0085632 Ribosomal_S13_N PF08069 7.9e-31 1
MGP_FVBNJ_P0085632 Ribosomal_S15 PF00312 3.6e-12 2
MGP_FVBNJ_P0085631 Ribosomal_S13_N PF08069 9e-31 1
MGP_FVBNJ_P0085631 Ribosomal_S15 PF00312 2.5e-13 2
MGP_FVBNJ_P0085636 Ribosomal_S13_N PF08069 1.2e-24 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Rps13-001 MGP_FVBNJ_T0085631 589 151aa MGP_FVBNJ_P0085631"/note="transcript_id=MGP_FVBNJ_T0085631
- MGP_FVBNJ_T0085632 1202 140aa MGP_FVBNJ_P0085632"/note="transcript_id=MGP_FVBNJ_T0085632
- MGP_FVBNJ_T0085633 428 No protein -
- MGP_FVBNJ_T0085634 653 No protein -
- MGP_FVBNJ_T0085635 2248 No protein -
- MGP_FVBNJ_T0085636 1150 53aa MGP_FVBNJ_P0085636"/note="transcript_id=MGP_FVBNJ_T0085636
- MGP_FVBNJ_T0085637 1926 No protein -
- MGP_FVBNJ_T0085638 958 No protein -

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_FVBNJ_G0032666

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_FVBNJ_G0032666mus_musculus_fvbnjMGP_FVBNJ_P0085631100100mus_caroliMGP_CAROLIEiJ_P0081715100100
MGP_FVBNJ_G0032666mus_musculus_fvbnjMGP_FVBNJ_P0085631100100mus_musculus_129s1svimjMGP_129S1SvImJ_P0086046100100
MGP_FVBNJ_G0032666mus_musculus_fvbnjMGP_FVBNJ_P0085631100100mus_musculus_ajMGP_AJ_P0086128100100
MGP_FVBNJ_G0032666mus_musculus_fvbnjMGP_FVBNJ_P0085631100100mus_musculus_balbcjMGP_BALBcJ_P0086091100100
MGP_FVBNJ_G0032666mus_musculus_fvbnjMGP_FVBNJ_P0085631100100mus_musculus_c57bl6njMGP_C57BL6NJ_P0086587100100
MGP_FVBNJ_G0032666mus_musculus_fvbnjMGP_FVBNJ_P0085631100100mus_musculus_dba2jMGP_DBA2J_P0085787100100
MGP_FVBNJ_G0032666mus_musculus_fvbnjMGP_FVBNJ_P0085631100100mus_musculus_cbajMGP_CBAJ_P0085591100100
MGP_FVBNJ_G0032666mus_musculus_fvbnjMGP_FVBNJ_P0085631100100mus_musculus_c3hhejMGP_C3HHeJ_P0085652100100
MGP_FVBNJ_G0032666mus_musculus_fvbnjMGP_FVBNJ_P0085631100100mus_musculus_lpjMGP_LPJ_P0085828100100
MGP_FVBNJ_G0032666mus_musculus_fvbnjMGP_FVBNJ_P0085631100100mus_spretusMGP_SPRETEiJ_P0085106100100
MGP_FVBNJ_G0032666mus_musculus_fvbnjMGP_FVBNJ_P0085631100100mus_musculus_nzohlltjMGP_NZOHlLtJ_P0086880100100
MGP_FVBNJ_G0032666mus_musculus_fvbnjMGP_FVBNJ_P0085631100100mus_musculusENSMUSP00000126294100100
MGP_FVBNJ_G0032666mus_musculus_fvbnjMGP_FVBNJ_P008563199.337799.3377mus_musculus_pwkphjMGP_PWKPhJ_P008558099.337799.3377
MGP_FVBNJ_G0032666mus_musculus_fvbnjMGP_FVBNJ_P0085631100100mus_pahariMGP_PahariEiJ_P0018519100100
MGP_FVBNJ_G0032666mus_musculus_fvbnjMGP_FVBNJ_P0085631100100mus_spicilegusENSMSIP00000006057100100
MGP_FVBNJ_G0032666mus_musculus_fvbnjMGP_FVBNJ_P0085631100100mus_musculus_casteijMGP_CASTEiJ_P0086170100100
MGP_FVBNJ_G0032666mus_musculus_fvbnjMGP_FVBNJ_P0085631100100mus_musculus_nodshiltjMGP_NODShiLtJ_P0085672100100
MGP_FVBNJ_G0032666mus_musculus_fvbnjMGP_FVBNJ_P0085631100100mus_musculus_wsbeijMGP_WSBEiJ_P0084695100100
MGP_FVBNJ_G0032666mus_musculus_fvbnjMGP_FVBNJ_P0085631100100mus_musculus_akrjMGP_AKRJ_P0086066100100
MGP_FVBNJ_G0032666mus_musculus_fvbnjMGP_FVBNJ_P0085631100100rattus_norvegicusENSRNOP00000095846100100
MGP_FVBNJ_G0032666mus_musculus_fvbnjMGP_FVBNJ_P008563198.013298.0132rattus_norvegicusENSRNOP0000006747095.483995.4839
MGP_FVBNJ_G0032666mus_musculus_fvbnjMGP_FVBNJ_P008563196.026596.0265rattus_norvegicusENSRNOP0000008964781.920981.9209

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression