RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | MGP_FVBNJ_G0032288 | Gene ID |
|
Accession |
- |
Symbol |
Pcf11 |
Alias |
- |
Full Name |
PCF11 cleavage and polyadenylation factor subunit |
Status |
Confidence |
Length |
26203 bases |
Strand |
Minus strand |
Position |
7 : 91088131 - 91114333 |
RNA binding domain |
CID |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
MGP_FVBNJ_P0084573 |
CID |
PF04818 |
1.6e-13 |
1 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
Pcf11-001 |
MGP_FVBNJ_T0084573 |
5825 |
1553aa |
MGP_FVBNJ_P0084573"/note="transcript_id=MGP_FVBNJ_T0084573 |
- |
MGP_FVBNJ_T0084574 |
4731 |
1475aa |
MGP_FVBNJ_P0084574"/note="transcript_id=MGP_FVBNJ_T0084574 |
- |
MGP_FVBNJ_T0084575 |
534 |
No protein |
- |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_FVBNJ_G0032288 | | | | | | | | |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_FVBNJ_G0032288 | mus_musculus_fvbnj | MGP_FVBNJ_P0084573 | 99.4849 | 99.1629 | mus_caroli | MGP_CAROLIEiJ_P0080671 | 99.4849 | 99.1629 |
MGP_FVBNJ_G0032288 | mus_musculus_fvbnj | MGP_FVBNJ_P0084573 | 100 | 100 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0084978 | 100 | 100 |
MGP_FVBNJ_G0032288 | mus_musculus_fvbnj | MGP_FVBNJ_P0084573 | 100 | 99.9356 | mus_musculus_aj | MGP_AJ_P0085045 | 100 | 99.9356 |
MGP_FVBNJ_G0032288 | mus_musculus_fvbnj | MGP_FVBNJ_P0084573 | 100 | 99.9356 | mus_musculus_balbcj | MGP_BALBcJ_P0085017 | 100 | 99.9356 |
MGP_FVBNJ_G0032288 | mus_musculus_fvbnj | MGP_FVBNJ_P0084573 | 100 | 100 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0085522 | 100 | 100 |
MGP_FVBNJ_G0032288 | mus_musculus_fvbnj | MGP_FVBNJ_P0084573 | 99.8712 | 99.8712 | mus_musculus_dba2j | MGP_DBA2J_P0084716 | 99.8712 | 99.8712 |
MGP_FVBNJ_G0032288 | mus_musculus_fvbnj | MGP_FVBNJ_P0084573 | 99.2917 | 99.2917 | mus_musculus_cbaj | MGP_CBAJ_P0084525 | 99.2917 | 99.2917 |
MGP_FVBNJ_G0032288 | mus_musculus_fvbnj | MGP_FVBNJ_P0084573 | 99.8712 | 99.8712 | mus_musculus_c3hhej | MGP_C3HHeJ_P0084588 | 99.8712 | 99.8712 |
MGP_FVBNJ_G0032288 | mus_musculus_fvbnj | MGP_FVBNJ_P0084573 | 99.8712 | 99.8712 | mus_musculus_lpj | MGP_LPJ_P0084747 | 99.8712 | 99.8712 |
MGP_FVBNJ_G0032288 | mus_musculus_fvbnj | MGP_FVBNJ_P0084573 | 99.9356 | 99.8712 | mus_spretus | MGP_SPRETEiJ_P0084036 | 99.9356 | 99.8712 |
MGP_FVBNJ_G0032288 | mus_musculus_fvbnj | MGP_FVBNJ_P0084573 | 99.8712 | 99.8712 | mus_musculus_nzohlltj | MGP_NZOHlLtJ_P0085802 | 99.8712 | 99.8712 |
MGP_FVBNJ_G0032288 | mus_musculus_fvbnj | MGP_FVBNJ_P0084573 | 100 | 100 | mus_musculus | ENSMUSP00000113717 | 100 | 100 |
MGP_FVBNJ_G0032288 | mus_musculus_fvbnj | MGP_FVBNJ_P0084573 | 99.9356 | 99.9356 | mus_musculus_pwkphj | MGP_PWKPhJ_P0084530 | 99.9356 | 99.9356 |
MGP_FVBNJ_G0032288 | mus_musculus_fvbnj | MGP_FVBNJ_P0084573 | 99.3561 | 98.9697 | mus_pahari | MGP_PahariEiJ_P0017512 | 99.3561 | 98.9697 |
MGP_FVBNJ_G0032288 | mus_musculus_fvbnj | MGP_FVBNJ_P0084573 | 99.7424 | 99.6136 | mus_spicilegus | ENSMSIP00000021978 | 99.7424 | 99.6136 |
MGP_FVBNJ_G0032288 | mus_musculus_fvbnj | MGP_FVBNJ_P0084573 | 100 | 100 | mus_musculus_casteij | MGP_CASTEiJ_P0085101 | 100 | 100 |
MGP_FVBNJ_G0032288 | mus_musculus_fvbnj | MGP_FVBNJ_P0084573 | 83.9665 | 83.8377 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0084618 | 90.8711 | 90.7317 |
MGP_FVBNJ_G0032288 | mus_musculus_fvbnj | MGP_FVBNJ_P0084573 | 99.8712 | 99.8712 | mus_musculus_wsbeij | MGP_WSBEiJ_P0083639 | 99.8712 | 99.8712 |
MGP_FVBNJ_G0032288 | mus_musculus_fvbnj | MGP_FVBNJ_P0084573 | 100 | 99.9356 | mus_musculus_akrj | MGP_AKRJ_P0084994 | 100 | 99.9356 |
MGP_FVBNJ_G0032288 | mus_musculus_fvbnj | MGP_FVBNJ_P0084573 | 99.1629 | 98.197 | rattus_norvegicus | ENSRNOP00000092470 | 82.4853 | 81.6818 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |