RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | MGP_FVBNJ_G0032196 | Gene ID |
|
Accession |
- |
Symbol |
Blm |
Alias |
- |
Full Name |
Bloom syndrome, RecQ helicase-like |
Status |
Confidence |
Length |
81201 bases |
Strand |
Minus strand |
Position |
7 : 78979052 - 79060252 |
RNA binding domain |
BDHCT , DEAD , HRDC |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
MGP_FVBNJ_P0084282 |
BDHCT |
PF08072 |
3.4e-22 |
1 |
MGP_FVBNJ_P0084282 |
DEAD |
PF00270 |
1e-19 |
2 |
MGP_FVBNJ_P0084282 |
HRDC |
PF00570 |
1.8e-11 |
3 |
MGP_FVBNJ_P0084281 |
BDHCT |
PF08072 |
3.4e-22 |
1 |
MGP_FVBNJ_P0084281 |
DEAD |
PF00270 |
1e-19 |
2 |
MGP_FVBNJ_P0084281 |
HRDC |
PF00570 |
1.8e-11 |
3 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
Blm-001 |
MGP_FVBNJ_T0084280 |
1362 |
181aa |
MGP_FVBNJ_P0084280"/note="transcript_id=MGP_FVBNJ_T0084280 |
- |
MGP_FVBNJ_T0084281 |
4598 |
1416aa |
MGP_FVBNJ_P0084281"/note="transcript_id=MGP_FVBNJ_T0084281 |
- |
MGP_FVBNJ_T0084282 |
4770 |
1419aa |
MGP_FVBNJ_P0084282"/note="transcript_id=MGP_FVBNJ_T0084282 |
- |
MGP_FVBNJ_T0084283 |
538 |
No protein |
- |
- |
MGP_FVBNJ_T0084284 |
485 |
No protein |
- |
- |
MGP_FVBNJ_T0084285 |
383 |
41aa |
MGP_FVBNJ_P0084285"/note="transcript_id=MGP_FVBNJ_T0084285 |
- |
MGP_FVBNJ_T0084286 |
465 |
50aa |
MGP_FVBNJ_P0084286"/note="transcript_id=MGP_FVBNJ_T0084286 |
- |
MGP_FVBNJ_T0084287 |
3582 |
No protein |
- |
- |
MGP_FVBNJ_T0084288 |
2507 |
No protein |
- |
- |
MGP_FVBNJ_T0084289 |
746 |
No protein |
- |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_FVBNJ_G0032196 | mus_musculus_fvbnj | MGP_FVBNJ_P0041227 | 36.2664 | 20.8882 | mus_musculus_fvbnj | MGP_FVBNJ_P0084282 | 31.0782 | 17.8999 |
MGP_FVBNJ_G0032196 | mus_musculus_fvbnj | MGP_FVBNJ_P0080472 | 54.9383 | 35.8025 | mus_musculus_fvbnj | MGP_FVBNJ_P0084282 | 25.0881 | 16.3495 |
MGP_FVBNJ_G0032196 | mus_musculus_fvbnj | MGP_FVBNJ_P0033325 | 37.0672 | 24.7454 | mus_musculus_fvbnj | MGP_FVBNJ_P0084282 | 25.6519 | 17.1247 |
MGP_FVBNJ_G0032196 | mus_musculus_fvbnj | MGP_FVBNJ_P0088136 | 37.4732 | 21.4133 | mus_musculus_fvbnj | MGP_FVBNJ_P0084282 | 36.9979 | 21.1416 |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_FVBNJ_G0032196 | mus_musculus_fvbnj | MGP_FVBNJ_P0084282 | 97.1106 | 95.9126 | mus_caroli | MGP_CAROLIEiJ_P0080394 | 97.5921 | 96.3881 |
MGP_FVBNJ_G0032196 | mus_musculus_fvbnj | MGP_FVBNJ_P0084282 | 99.7181 | 99.6476 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0084682 | 99.7181 | 99.6476 |
MGP_FVBNJ_G0032196 | mus_musculus_fvbnj | MGP_FVBNJ_P0084282 | 100 | 100 | mus_musculus_aj | MGP_AJ_P0084754 | 100 | 100 |
MGP_FVBNJ_G0032196 | mus_musculus_fvbnj | MGP_FVBNJ_P0084282 | 100 | 100 | mus_musculus_balbcj | MGP_BALBcJ_P0084725 | 100 | 100 |
MGP_FVBNJ_G0032196 | mus_musculus_fvbnj | MGP_FVBNJ_P0084282 | 99.5772 | 99.4362 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0085228 | 99.5772 | 99.4362 |
MGP_FVBNJ_G0032196 | mus_musculus_fvbnj | MGP_FVBNJ_P0084282 | 99.7181 | 99.6476 | mus_musculus_dba2j | MGP_DBA2J_P0084425 | 99.5077 | 99.4374 |
MGP_FVBNJ_G0032196 | mus_musculus_fvbnj | MGP_FVBNJ_P0084282 | 99.7181 | 99.6476 | mus_musculus_cbaj | MGP_CBAJ_P0084239 | 99.5077 | 99.4374 |
MGP_FVBNJ_G0032196 | mus_musculus_fvbnj | MGP_FVBNJ_P0084282 | 99.7181 | 99.6476 | mus_musculus_c3hhej | MGP_C3HHeJ_P0084298 | 99.5077 | 99.4374 |
MGP_FVBNJ_G0032196 | mus_musculus_fvbnj | MGP_FVBNJ_P0084282 | 99.7181 | 99.6476 | mus_musculus_lpj | MGP_LPJ_P0084445 | 99.7181 | 99.6476 |
MGP_FVBNJ_G0032196 | mus_musculus_fvbnj | MGP_FVBNJ_P0084282 | 99.0839 | 98.3087 | mus_spretus | MGP_SPRETEiJ_P0083743 | 99.2938 | 98.517 |
MGP_FVBNJ_G0032196 | mus_musculus_fvbnj | MGP_FVBNJ_P0084282 | 100 | 100 | mus_musculus_nzohlltj | MGP_NZOHlLtJ_P0085503 | 100 | 100 |
MGP_FVBNJ_G0032196 | mus_musculus_fvbnj | MGP_FVBNJ_P0084282 | 99.5772 | 99.4362 | mus_musculus | ENSMUSP00000127995 | 99.5772 | 99.4362 |
MGP_FVBNJ_G0032196 | mus_musculus_fvbnj | MGP_FVBNJ_P0084282 | 99.6476 | 99.1543 | mus_musculus_pwkphj | MGP_PWKPhJ_P0084235 | 99.7179 | 99.2243 |
MGP_FVBNJ_G0032196 | mus_musculus_fvbnj | MGP_FVBNJ_P0084282 | 96.5469 | 94.5032 | mus_pahari | MGP_PahariEiJ_P0017243 | 97.3011 | 95.2415 |
MGP_FVBNJ_G0032196 | mus_musculus_fvbnj | MGP_FVBNJ_P0084282 | 98.5906 | 98.1677 | mus_spicilegus | ENSMSIP00000003472 | 98.8693 | 98.4452 |
MGP_FVBNJ_G0032196 | mus_musculus_fvbnj | MGP_FVBNJ_P0084282 | 99.6476 | 99.1543 | mus_musculus_casteij | MGP_CASTEiJ_P0084809 | 99.7883 | 99.2943 |
MGP_FVBNJ_G0032196 | mus_musculus_fvbnj | MGP_FVBNJ_P0084282 | 99.7181 | 99.6476 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0084328 | 99.5778 | 99.5074 |
MGP_FVBNJ_G0032196 | mus_musculus_fvbnj | MGP_FVBNJ_P0084282 | 99.7181 | 99.6476 | mus_musculus_wsbeij | MGP_WSBEiJ_P0083352 | 99.6479 | 99.5775 |
MGP_FVBNJ_G0032196 | mus_musculus_fvbnj | MGP_FVBNJ_P0084282 | 99.9295 | 99.9295 | mus_musculus_akrj | MGP_AKRJ_P0084704 | 100 | 100 |
MGP_FVBNJ_G0032196 | mus_musculus_fvbnj | MGP_FVBNJ_P0084282 | 91.5433 | 88.0197 | rattus_norvegicus | ENSRNOP00000015065 | 92.6534 | 89.087 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |