Description

Ensembl ID MGP_FVBNJ_G0032196 Gene ID Accession -
Symbol Blm Alias - Full Name Bloom syndrome, RecQ helicase-like
Status Confidence Length 81201 bases Strand Minus strand
Position 7 : 78979052 - 79060252 RNA binding domain BDHCT , DEAD , HRDC
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_FVBNJ_P0084282 BDHCT PF08072 3.4e-22 1
MGP_FVBNJ_P0084282 DEAD PF00270 1e-19 2
MGP_FVBNJ_P0084282 HRDC PF00570 1.8e-11 3
MGP_FVBNJ_P0084281 BDHCT PF08072 3.4e-22 1
MGP_FVBNJ_P0084281 DEAD PF00270 1e-19 2
MGP_FVBNJ_P0084281 HRDC PF00570 1.8e-11 3

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Blm-001 MGP_FVBNJ_T0084280 1362 181aa MGP_FVBNJ_P0084280"/note="transcript_id=MGP_FVBNJ_T0084280
- MGP_FVBNJ_T0084281 4598 1416aa MGP_FVBNJ_P0084281"/note="transcript_id=MGP_FVBNJ_T0084281
- MGP_FVBNJ_T0084282 4770 1419aa MGP_FVBNJ_P0084282"/note="transcript_id=MGP_FVBNJ_T0084282
- MGP_FVBNJ_T0084283 538 No protein -
- MGP_FVBNJ_T0084284 485 No protein -
- MGP_FVBNJ_T0084285 383 41aa MGP_FVBNJ_P0084285"/note="transcript_id=MGP_FVBNJ_T0084285
- MGP_FVBNJ_T0084286 465 50aa MGP_FVBNJ_P0084286"/note="transcript_id=MGP_FVBNJ_T0084286
- MGP_FVBNJ_T0084287 3582 No protein -
- MGP_FVBNJ_T0084288 2507 No protein -
- MGP_FVBNJ_T0084289 746 No protein -

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_FVBNJ_G0032196mus_musculus_fvbnjMGP_FVBNJ_P004122736.266420.8882mus_musculus_fvbnjMGP_FVBNJ_P008428231.078217.8999
MGP_FVBNJ_G0032196mus_musculus_fvbnjMGP_FVBNJ_P008047254.938335.8025mus_musculus_fvbnjMGP_FVBNJ_P008428225.088116.3495
MGP_FVBNJ_G0032196mus_musculus_fvbnjMGP_FVBNJ_P003332537.067224.7454mus_musculus_fvbnjMGP_FVBNJ_P008428225.651917.1247
MGP_FVBNJ_G0032196mus_musculus_fvbnjMGP_FVBNJ_P008813637.473221.4133mus_musculus_fvbnjMGP_FVBNJ_P008428236.997921.1416

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_FVBNJ_G0032196mus_musculus_fvbnjMGP_FVBNJ_P008428297.110695.9126mus_caroliMGP_CAROLIEiJ_P008039497.592196.3881
MGP_FVBNJ_G0032196mus_musculus_fvbnjMGP_FVBNJ_P008428299.718199.6476mus_musculus_129s1svimjMGP_129S1SvImJ_P008468299.718199.6476
MGP_FVBNJ_G0032196mus_musculus_fvbnjMGP_FVBNJ_P0084282100100mus_musculus_ajMGP_AJ_P0084754100100
MGP_FVBNJ_G0032196mus_musculus_fvbnjMGP_FVBNJ_P0084282100100mus_musculus_balbcjMGP_BALBcJ_P0084725100100
MGP_FVBNJ_G0032196mus_musculus_fvbnjMGP_FVBNJ_P008428299.577299.4362mus_musculus_c57bl6njMGP_C57BL6NJ_P008522899.577299.4362
MGP_FVBNJ_G0032196mus_musculus_fvbnjMGP_FVBNJ_P008428299.718199.6476mus_musculus_dba2jMGP_DBA2J_P008442599.507799.4374
MGP_FVBNJ_G0032196mus_musculus_fvbnjMGP_FVBNJ_P008428299.718199.6476mus_musculus_cbajMGP_CBAJ_P008423999.507799.4374
MGP_FVBNJ_G0032196mus_musculus_fvbnjMGP_FVBNJ_P008428299.718199.6476mus_musculus_c3hhejMGP_C3HHeJ_P008429899.507799.4374
MGP_FVBNJ_G0032196mus_musculus_fvbnjMGP_FVBNJ_P008428299.718199.6476mus_musculus_lpjMGP_LPJ_P008444599.718199.6476
MGP_FVBNJ_G0032196mus_musculus_fvbnjMGP_FVBNJ_P008428299.083998.3087mus_spretusMGP_SPRETEiJ_P008374399.293898.517
MGP_FVBNJ_G0032196mus_musculus_fvbnjMGP_FVBNJ_P0084282100100mus_musculus_nzohlltjMGP_NZOHlLtJ_P0085503100100
MGP_FVBNJ_G0032196mus_musculus_fvbnjMGP_FVBNJ_P008428299.577299.4362mus_musculusENSMUSP0000012799599.577299.4362
MGP_FVBNJ_G0032196mus_musculus_fvbnjMGP_FVBNJ_P008428299.647699.1543mus_musculus_pwkphjMGP_PWKPhJ_P008423599.717999.2243
MGP_FVBNJ_G0032196mus_musculus_fvbnjMGP_FVBNJ_P008428296.546994.5032mus_pahariMGP_PahariEiJ_P001724397.301195.2415
MGP_FVBNJ_G0032196mus_musculus_fvbnjMGP_FVBNJ_P008428298.590698.1677mus_spicilegusENSMSIP0000000347298.869398.4452
MGP_FVBNJ_G0032196mus_musculus_fvbnjMGP_FVBNJ_P008428299.647699.1543mus_musculus_casteijMGP_CASTEiJ_P008480999.788399.2943
MGP_FVBNJ_G0032196mus_musculus_fvbnjMGP_FVBNJ_P008428299.718199.6476mus_musculus_nodshiltjMGP_NODShiLtJ_P008432899.577899.5074
MGP_FVBNJ_G0032196mus_musculus_fvbnjMGP_FVBNJ_P008428299.718199.6476mus_musculus_wsbeijMGP_WSBEiJ_P008335299.647999.5775
MGP_FVBNJ_G0032196mus_musculus_fvbnjMGP_FVBNJ_P008428299.929599.9295mus_musculus_akrjMGP_AKRJ_P0084704100100
MGP_FVBNJ_G0032196mus_musculus_fvbnjMGP_FVBNJ_P008428291.543388.0197rattus_norvegicusENSRNOP0000001506592.653489.087

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression