Description

Ensembl ID MGP_FVBNJ_G0030131 Gene ID Accession -
Symbol Ptcd1 Alias - Full Name pentatricopeptide repeat domain 1
Status Confidence Length 19793 bases Strand Minus strand
Position 5 : 143056847 - 143076639 RNA binding domain PPR_3 , PPR_long , PPR
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_FVBNJ_P0075469 PPR_3 PF13812 5.7e-29 1
MGP_FVBNJ_P0075469 PPR_3 PF13812 5.7e-29 2
MGP_FVBNJ_P0075469 PPR_3 PF13812 5.7e-29 3
MGP_FVBNJ_P0075469 PPR_long PF17177 3.7e-19 4
MGP_FVBNJ_P0075469 PPR PF01535 1.5e-17 5
MGP_FVBNJ_P0075469 PPR PF01535 1.5e-17 6

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Ptcd1-001 MGP_FVBNJ_T0075469 3171 695aa MGP_FVBNJ_P0075469"/note="transcript_id=MGP_FVBNJ_T0075469
- MGP_FVBNJ_T0075470 273 20aa MGP_FVBNJ_P0075470"/note="transcript_id=MGP_FVBNJ_T0075470

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_FVBNJ_G0030131mus_musculus_fvbnjMGP_FVBNJ_P007401942.120323.7822mus_musculus_fvbnjMGP_FVBNJ_P007546921.151111.9424

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_FVBNJ_G0030131mus_musculus_fvbnjMGP_FVBNJ_P007546998.273496.9784mus_caroliMGP_CAROLIEiJ_P007213898.273496.9784
MGP_FVBNJ_G0030131mus_musculus_fvbnjMGP_FVBNJ_P007546999.856199.5683mus_musculus_129s1svimjMGP_129S1SvImJ_P007582399.856199.5683
MGP_FVBNJ_G0030131mus_musculus_fvbnjMGP_FVBNJ_P007546999.856199.7122mus_musculus_ajMGP_AJ_P007590099.856199.7122
MGP_FVBNJ_G0030131mus_musculus_fvbnjMGP_FVBNJ_P007546999.856199.7122mus_musculus_balbcjMGP_BALBcJ_P007584999.856199.7122
MGP_FVBNJ_G0030131mus_musculus_fvbnjMGP_FVBNJ_P007546999.424599.2806mus_musculus_c57bl6njMGP_C57BL6NJ_P007631099.424599.2806
MGP_FVBNJ_G0030131mus_musculus_fvbnjMGP_FVBNJ_P007546999.856199.7122mus_musculus_dba2jMGP_DBA2J_P007557899.856199.7122
MGP_FVBNJ_G0030131mus_musculus_fvbnjMGP_FVBNJ_P007546999.856199.5683mus_musculus_cbajMGP_CBAJ_P007542099.856199.5683
MGP_FVBNJ_G0030131mus_musculus_fvbnjMGP_FVBNJ_P007546999.856199.7122mus_musculus_c3hhejMGP_C3HHeJ_P007546999.856199.7122
MGP_FVBNJ_G0030131mus_musculus_fvbnjMGP_FVBNJ_P007546999.856199.5683mus_musculus_lpjMGP_LPJ_P007562499.856199.5683
MGP_FVBNJ_G0030131mus_musculus_fvbnjMGP_FVBNJ_P007546999.136798.2734mus_spretusMGP_SPRETEiJ_P007495799.136798.2734
MGP_FVBNJ_G0030131mus_musculus_fvbnjMGP_FVBNJ_P007546999.424599.1367mus_musculus_nzohlltjMGP_NZOHlLtJ_P007655799.424599.1367
MGP_FVBNJ_G0030131mus_musculus_fvbnjMGP_FVBNJ_P007546999.424599.2806mus_musculusENSMUSP0000003162899.424599.2806
MGP_FVBNJ_G0030131mus_musculus_fvbnjMGP_FVBNJ_P007546998.992898.2734mus_musculus_pwkphjMGP_PWKPhJ_P007546498.992898.2734
MGP_FVBNJ_G0030131mus_musculus_fvbnjMGP_FVBNJ_P007546995.827393.5252mus_pahariMGP_PahariEiJ_P006034995.965493.6599
MGP_FVBNJ_G0030131mus_musculus_fvbnjMGP_FVBNJ_P007546998.70597.9856mus_spicilegusENSMSIP0000003471398.70597.9856
MGP_FVBNJ_G0030131mus_musculus_fvbnjMGP_FVBNJ_P007546999.568399.2806mus_musculus_casteijMGP_CASTEiJ_P007601399.568399.2806
MGP_FVBNJ_G0030131mus_musculus_fvbnjMGP_FVBNJ_P0075469100100mus_musculus_nodshiltjMGP_NODShiLtJ_P0075481100100
MGP_FVBNJ_G0030131mus_musculus_fvbnjMGP_FVBNJ_P007546999.424599.1367mus_musculus_wsbeijMGP_WSBEiJ_P007460199.424599.1367
MGP_FVBNJ_G0030131mus_musculus_fvbnjMGP_FVBNJ_P007546999.856199.5683mus_musculus_akrjMGP_AKRJ_P007580499.856199.5683
MGP_FVBNJ_G0030131mus_musculus_fvbnjMGP_FVBNJ_P007546992.086387.9137rattus_norvegicusENSRNOP0000006809393.294589.0671

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression