RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | MGP_FVBNJ_G0029806 | Gene ID |
|
Accession |
- |
Symbol |
Atxn2 |
Alias |
- |
Full Name |
ataxin 2 |
Status |
Confidence |
Length |
75755 bases |
Strand |
Plus strand |
Position |
5 : 119166494 - 119242248 |
RNA binding domain |
LsmAD , PAM2 , SM-ATX |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
MGP_FVBNJ_P0073672 |
LsmAD |
PF06741 |
2.7e-15 |
1 |
MGP_FVBNJ_P0073672 |
PAM2 |
PF07145 |
5.8e-07 |
2 |
MGP_FVBNJ_P0073671 |
LsmAD |
PF06741 |
3.5e-15 |
1 |
MGP_FVBNJ_P0073671 |
PAM2 |
PF07145 |
8.1e-07 |
2 |
MGP_FVBNJ_P0073671 |
SM-ATX |
PF14438 |
2.1e-20 |
3 |
MGP_FVBNJ_P0073673 |
LsmAD |
PF06741 |
5.5e-07 |
1 |
MGP_FVBNJ_P0073675 |
PAM2 |
PF07145 |
1.4e-06 |
1 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
Atxn2-003 |
MGP_FVBNJ_T0073669 |
461 |
No protein |
- |
- |
MGP_FVBNJ_T0073670 |
497 |
No protein |
- |
- |
MGP_FVBNJ_T0073671 |
3899 |
1078aa |
MGP_FVBNJ_P0073671"/note="transcript_id=MGP_FVBNJ_T0073671 |
- |
MGP_FVBNJ_T0073672 |
3294 |
929aa |
MGP_FVBNJ_P0073672"/note="transcript_id=MGP_FVBNJ_T0073672 |
- |
MGP_FVBNJ_T0073673 |
990 |
329aa |
MGP_FVBNJ_P0073673"/note="transcript_id=MGP_FVBNJ_T0073673 |
- |
MGP_FVBNJ_T0073674 |
3130 |
No protein |
- |
- |
MGP_FVBNJ_T0073675 |
2343 |
662aa |
MGP_FVBNJ_P0073675"/note="transcript_id=MGP_FVBNJ_T0073675 |
- |
MGP_FVBNJ_T0073676 |
1003 |
No protein |
- |
- |
MGP_FVBNJ_T0073677 |
755 |
No protein |
- |
- |
MGP_FVBNJ_T0073678 |
240 |
No protein |
- |
- |
MGP_FVBNJ_T0073679 |
754 |
No protein |
- |
- |
MGP_FVBNJ_T0073680 |
6946 |
No protein |
- |
- |
MGP_FVBNJ_T0073681 |
891 |
234aa |
MGP_FVBNJ_P0073681"/note="transcript_id=MGP_FVBNJ_T0073681 |
- |
MGP_FVBNJ_T0073682 |
1468 |
No protein |
- |
- |
MGP_FVBNJ_T0073683 |
397 |
65aa |
MGP_FVBNJ_P0073683"/note="transcript_id=MGP_FVBNJ_T0073683 |
- |
MGP_FVBNJ_T0073684 |
482 |
No protein |
- |
- |
MGP_FVBNJ_T0073685 |
578 |
No protein |
- |
- |
MGP_FVBNJ_T0073686 |
388 |
96aa |
MGP_FVBNJ_P0073686"/note="transcript_id=MGP_FVBNJ_T0073686 |
- |
MGP_FVBNJ_T0073687 |
412 |
63aa |
MGP_FVBNJ_P0073687"/note="transcript_id=MGP_FVBNJ_T0073687 |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_FVBNJ_G0029806 | mus_musculus_fvbnj | MGP_FVBNJ_P0086061 | 52.9197 | 38.7774 | mus_musculus_fvbnj | MGP_FVBNJ_P0073671 | 53.8033 | 39.4249 |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_FVBNJ_G0029806 | mus_musculus_fvbnj | MGP_FVBNJ_P0073671 | 99.3506 | 98.7941 | mus_caroli | MGP_CAROLIEiJ_P0070478 | 83.0877 | 82.6222 |
MGP_FVBNJ_G0029806 | mus_musculus_fvbnj | MGP_FVBNJ_P0073671 | 99.8145 | 99.6289 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0074027 | 86.7043 | 86.5431 |
MGP_FVBNJ_G0029806 | mus_musculus_fvbnj | MGP_FVBNJ_P0073671 | 99.8145 | 99.6289 | mus_musculus_aj | MGP_AJ_P0074103 | 83.6703 | 83.5148 |
MGP_FVBNJ_G0029806 | mus_musculus_fvbnj | MGP_FVBNJ_P0073671 | 99.8145 | 99.6289 | mus_musculus_balbcj | MGP_BALBcJ_P0074041 | 86.7742 | 86.6129 |
MGP_FVBNJ_G0029806 | mus_musculus_fvbnj | MGP_FVBNJ_P0073671 | 99.8145 | 99.6289 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0074510 | 86.0112 | 85.8513 |
MGP_FVBNJ_G0029806 | mus_musculus_fvbnj | MGP_FVBNJ_P0073671 | 99.8145 | 99.6289 | mus_musculus_dba2j | MGP_DBA2J_P0073771 | 85.0593 | 84.9012 |
MGP_FVBNJ_G0029806 | mus_musculus_fvbnj | MGP_FVBNJ_P0073671 | 99.8145 | 99.6289 | mus_musculus_cbaj | MGP_CBAJ_P0073630 | 87.1255 | 86.9636 |
MGP_FVBNJ_G0029806 | mus_musculus_fvbnj | MGP_FVBNJ_P0073671 | 99.8145 | 99.6289 | mus_musculus_c3hhej | MGP_C3HHeJ_P0073676 | 83.9314 | 83.7754 |
MGP_FVBNJ_G0029806 | mus_musculus_fvbnj | MGP_FVBNJ_P0073671 | 84.3228 | 83.5807 | mus_musculus_lpj | MGP_LPJ_P0073833 | 97.8471 | 96.986 |
MGP_FVBNJ_G0029806 | mus_musculus_fvbnj | MGP_FVBNJ_P0073671 | 99.6289 | 99.1651 | mus_spretus | MGP_SPRETEiJ_P0073167 | 86.6828 | 86.2793 |
MGP_FVBNJ_G0029806 | mus_musculus_fvbnj | MGP_FVBNJ_P0073671 | 99.8145 | 99.6289 | mus_musculus_nzohlltj | MGP_NZOHlLtJ_P0074745 | 86.4952 | 86.3344 |
MGP_FVBNJ_G0029806 | mus_musculus_fvbnj | MGP_FVBNJ_P0073671 | 99.8145 | 99.6289 | mus_musculus | ENSMUSP00000056715 | 83.6703 | 83.5148 |
MGP_FVBNJ_G0029806 | mus_musculus_fvbnj | MGP_FVBNJ_P0073671 | 99.7217 | 99.5362 | mus_musculus_pwkphj | MGP_PWKPhJ_P0073675 | 86.9038 | 86.7421 |
MGP_FVBNJ_G0029806 | mus_musculus_fvbnj | MGP_FVBNJ_P0073671 | 92.2078 | 91.1874 | mus_pahari | MGP_PahariEiJ_P0058691 | 81.6092 | 80.7061 |
MGP_FVBNJ_G0029806 | mus_musculus_fvbnj | MGP_FVBNJ_P0073671 | 99.2579 | 98.6085 | mus_spicilegus | ENSMSIP00000014535 | 96.3964 | 95.7658 |
MGP_FVBNJ_G0029806 | mus_musculus_fvbnj | MGP_FVBNJ_P0073671 | 99.8145 | 99.6289 | mus_musculus_casteij | MGP_CASTEiJ_P0074226 | 86.1489 | 85.9888 |
MGP_FVBNJ_G0029806 | mus_musculus_fvbnj | MGP_FVBNJ_P0073671 | 99.8145 | 99.6289 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0073668 | 86.9144 | 86.7528 |
MGP_FVBNJ_G0029806 | mus_musculus_fvbnj | MGP_FVBNJ_P0073671 | 99.8145 | 99.6289 | mus_musculus_wsbeij | MGP_WSBEiJ_P0072812 | 86.7043 | 86.5431 |
MGP_FVBNJ_G0029806 | mus_musculus_fvbnj | MGP_FVBNJ_P0073671 | 99.8145 | 99.6289 | mus_musculus_akrj | MGP_AKRJ_P0074011 | 82.9607 | 82.8065 |
MGP_FVBNJ_G0029806 | mus_musculus_fvbnj | MGP_FVBNJ_P0073671 | 96.2894 | 94.7124 | rattus_norvegicus | ENSRNOP00000095616 | 74.3021 | 73.0852 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |