Description

Ensembl ID MGP_FVBNJ_G0029806 Gene ID Accession -
Symbol Atxn2 Alias - Full Name ataxin 2
Status Confidence Length 75755 bases Strand Plus strand
Position 5 : 119166494 - 119242248 RNA binding domain LsmAD , PAM2 , SM-ATX
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_FVBNJ_P0073672 LsmAD PF06741 2.7e-15 1
MGP_FVBNJ_P0073672 PAM2 PF07145 5.8e-07 2
MGP_FVBNJ_P0073671 LsmAD PF06741 3.5e-15 1
MGP_FVBNJ_P0073671 PAM2 PF07145 8.1e-07 2
MGP_FVBNJ_P0073671 SM-ATX PF14438 2.1e-20 3
MGP_FVBNJ_P0073673 LsmAD PF06741 5.5e-07 1
MGP_FVBNJ_P0073675 PAM2 PF07145 1.4e-06 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Atxn2-003 MGP_FVBNJ_T0073669 461 No protein -
- MGP_FVBNJ_T0073670 497 No protein -
- MGP_FVBNJ_T0073671 3899 1078aa MGP_FVBNJ_P0073671"/note="transcript_id=MGP_FVBNJ_T0073671
- MGP_FVBNJ_T0073672 3294 929aa MGP_FVBNJ_P0073672"/note="transcript_id=MGP_FVBNJ_T0073672
- MGP_FVBNJ_T0073673 990 329aa MGP_FVBNJ_P0073673"/note="transcript_id=MGP_FVBNJ_T0073673
- MGP_FVBNJ_T0073674 3130 No protein -
- MGP_FVBNJ_T0073675 2343 662aa MGP_FVBNJ_P0073675"/note="transcript_id=MGP_FVBNJ_T0073675
- MGP_FVBNJ_T0073676 1003 No protein -
- MGP_FVBNJ_T0073677 755 No protein -
- MGP_FVBNJ_T0073678 240 No protein -
- MGP_FVBNJ_T0073679 754 No protein -
- MGP_FVBNJ_T0073680 6946 No protein -
- MGP_FVBNJ_T0073681 891 234aa MGP_FVBNJ_P0073681"/note="transcript_id=MGP_FVBNJ_T0073681
- MGP_FVBNJ_T0073682 1468 No protein -
- MGP_FVBNJ_T0073683 397 65aa MGP_FVBNJ_P0073683"/note="transcript_id=MGP_FVBNJ_T0073683
- MGP_FVBNJ_T0073684 482 No protein -
- MGP_FVBNJ_T0073685 578 No protein -
- MGP_FVBNJ_T0073686 388 96aa MGP_FVBNJ_P0073686"/note="transcript_id=MGP_FVBNJ_T0073686
- MGP_FVBNJ_T0073687 412 63aa MGP_FVBNJ_P0073687"/note="transcript_id=MGP_FVBNJ_T0073687

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_FVBNJ_G0029806mus_musculus_fvbnjMGP_FVBNJ_P008606152.919738.7774mus_musculus_fvbnjMGP_FVBNJ_P007367153.803339.4249

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_FVBNJ_G0029806mus_musculus_fvbnjMGP_FVBNJ_P007367199.350698.7941mus_caroliMGP_CAROLIEiJ_P007047883.087782.6222
MGP_FVBNJ_G0029806mus_musculus_fvbnjMGP_FVBNJ_P007367199.814599.6289mus_musculus_129s1svimjMGP_129S1SvImJ_P007402786.704386.5431
MGP_FVBNJ_G0029806mus_musculus_fvbnjMGP_FVBNJ_P007367199.814599.6289mus_musculus_ajMGP_AJ_P007410383.670383.5148
MGP_FVBNJ_G0029806mus_musculus_fvbnjMGP_FVBNJ_P007367199.814599.6289mus_musculus_balbcjMGP_BALBcJ_P007404186.774286.6129
MGP_FVBNJ_G0029806mus_musculus_fvbnjMGP_FVBNJ_P007367199.814599.6289mus_musculus_c57bl6njMGP_C57BL6NJ_P007451086.011285.8513
MGP_FVBNJ_G0029806mus_musculus_fvbnjMGP_FVBNJ_P007367199.814599.6289mus_musculus_dba2jMGP_DBA2J_P007377185.059384.9012
MGP_FVBNJ_G0029806mus_musculus_fvbnjMGP_FVBNJ_P007367199.814599.6289mus_musculus_cbajMGP_CBAJ_P007363087.125586.9636
MGP_FVBNJ_G0029806mus_musculus_fvbnjMGP_FVBNJ_P007367199.814599.6289mus_musculus_c3hhejMGP_C3HHeJ_P007367683.931483.7754
MGP_FVBNJ_G0029806mus_musculus_fvbnjMGP_FVBNJ_P007367184.322883.5807mus_musculus_lpjMGP_LPJ_P007383397.847196.986
MGP_FVBNJ_G0029806mus_musculus_fvbnjMGP_FVBNJ_P007367199.628999.1651mus_spretusMGP_SPRETEiJ_P007316786.682886.2793
MGP_FVBNJ_G0029806mus_musculus_fvbnjMGP_FVBNJ_P007367199.814599.6289mus_musculus_nzohlltjMGP_NZOHlLtJ_P007474586.495286.3344
MGP_FVBNJ_G0029806mus_musculus_fvbnjMGP_FVBNJ_P007367199.814599.6289mus_musculusENSMUSP0000005671583.670383.5148
MGP_FVBNJ_G0029806mus_musculus_fvbnjMGP_FVBNJ_P007367199.721799.5362mus_musculus_pwkphjMGP_PWKPhJ_P007367586.903886.7421
MGP_FVBNJ_G0029806mus_musculus_fvbnjMGP_FVBNJ_P007367192.207891.1874mus_pahariMGP_PahariEiJ_P005869181.609280.7061
MGP_FVBNJ_G0029806mus_musculus_fvbnjMGP_FVBNJ_P007367199.257998.6085mus_spicilegusENSMSIP0000001453596.396495.7658
MGP_FVBNJ_G0029806mus_musculus_fvbnjMGP_FVBNJ_P007367199.814599.6289mus_musculus_casteijMGP_CASTEiJ_P007422686.148985.9888
MGP_FVBNJ_G0029806mus_musculus_fvbnjMGP_FVBNJ_P007367199.814599.6289mus_musculus_nodshiltjMGP_NODShiLtJ_P007366886.914486.7528
MGP_FVBNJ_G0029806mus_musculus_fvbnjMGP_FVBNJ_P007367199.814599.6289mus_musculus_wsbeijMGP_WSBEiJ_P007281286.704386.5431
MGP_FVBNJ_G0029806mus_musculus_fvbnjMGP_FVBNJ_P007367199.814599.6289mus_musculus_akrjMGP_AKRJ_P007401182.960782.8065
MGP_FVBNJ_G0029806mus_musculus_fvbnjMGP_FVBNJ_P007367196.289494.7124rattus_norvegicusENSRNOP0000009561674.302173.0852

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression