Description

Ensembl ID MGP_FVBNJ_G0028631 Gene ID Accession -
Symbol Pum1 Alias - Full Name pumilio RNA-binding family member 1
Status Confidence Length 126179 bases Strand Plus strand
Position 4 : 126434991 - 126561169 RNA binding domain PUF
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_FVBNJ_P0067800 PUF PF00806 3e-81 1
MGP_FVBNJ_P0067800 PUF PF00806 3e-81 2
MGP_FVBNJ_P0067800 PUF PF00806 3e-81 3
MGP_FVBNJ_P0067800 PUF PF00806 3e-81 4
MGP_FVBNJ_P0067800 PUF PF00806 3e-81 5
MGP_FVBNJ_P0067800 PUF PF00806 3e-81 6
MGP_FVBNJ_P0067800 PUF PF00806 3e-81 7
MGP_FVBNJ_P0067800 PUF PF00806 3e-81 8
MGP_FVBNJ_P0067803 PUF PF00806 2.3e-80 1
MGP_FVBNJ_P0067803 PUF PF00806 2.3e-80 2
MGP_FVBNJ_P0067803 PUF PF00806 2.3e-80 3
MGP_FVBNJ_P0067803 PUF PF00806 2.3e-80 4
MGP_FVBNJ_P0067803 PUF PF00806 2.3e-80 5
MGP_FVBNJ_P0067803 PUF PF00806 2.3e-80 6
MGP_FVBNJ_P0067803 PUF PF00806 2.3e-80 7
MGP_FVBNJ_P0067803 PUF PF00806 2.3e-80 8
MGP_FVBNJ_P0067799 PUF PF00806 1.9e-79 1
MGP_FVBNJ_P0067799 PUF PF00806 1.9e-79 2
MGP_FVBNJ_P0067799 PUF PF00806 1.9e-79 3
MGP_FVBNJ_P0067799 PUF PF00806 1.9e-79 4
MGP_FVBNJ_P0067799 PUF PF00806 1.9e-79 5
MGP_FVBNJ_P0067799 PUF PF00806 1.9e-79 6
MGP_FVBNJ_P0067799 PUF PF00806 1.9e-79 7
MGP_FVBNJ_P0067799 PUF PF00806 1.9e-79 8
MGP_FVBNJ_P0067804 PUF PF00806 4.1e-79 1
MGP_FVBNJ_P0067804 PUF PF00806 4.1e-79 2
MGP_FVBNJ_P0067804 PUF PF00806 4.1e-79 3
MGP_FVBNJ_P0067804 PUF PF00806 4.1e-79 4
MGP_FVBNJ_P0067804 PUF PF00806 4.1e-79 5
MGP_FVBNJ_P0067804 PUF PF00806 4.1e-79 6
MGP_FVBNJ_P0067804 PUF PF00806 4.1e-79 7
MGP_FVBNJ_P0067804 PUF PF00806 4.1e-79 8
MGP_FVBNJ_P0067798 PUF PF00806 4.1e-79 1
MGP_FVBNJ_P0067798 PUF PF00806 4.1e-79 2
MGP_FVBNJ_P0067798 PUF PF00806 4.1e-79 3
MGP_FVBNJ_P0067798 PUF PF00806 4.1e-79 4
MGP_FVBNJ_P0067798 PUF PF00806 4.1e-79 5
MGP_FVBNJ_P0067798 PUF PF00806 4.1e-79 6
MGP_FVBNJ_P0067798 PUF PF00806 4.1e-79 7
MGP_FVBNJ_P0067798 PUF PF00806 4.1e-79 8

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Pum1-001 MGP_FVBNJ_T0067798 5388 1189aa MGP_FVBNJ_P0067798"/note="transcript_id=MGP_FVBNJ_T0067798
- MGP_FVBNJ_T0067799 5057 1092aa MGP_FVBNJ_P0067799"/note="transcript_id=MGP_FVBNJ_T0067799
- MGP_FVBNJ_T0067800 4613 944aa MGP_FVBNJ_P0067800"/note="transcript_id=MGP_FVBNJ_T0067800
- MGP_FVBNJ_T0067801 1273 No protein -
- MGP_FVBNJ_T0067802 693 218aa MGP_FVBNJ_P0067802"/note="transcript_id=MGP_FVBNJ_T0067802
- MGP_FVBNJ_T0067803 4017 1186aa MGP_FVBNJ_P0067803"/note="transcript_id=MGP_FVBNJ_T0067803
- MGP_FVBNJ_T0067804 3991 1188aa MGP_FVBNJ_P0067804"/note="transcript_id=MGP_FVBNJ_T0067804

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_FVBNJ_G0028631mus_musculus_fvbnjMGP_FVBNJ_P003418586.210178.2364mus_musculus_fvbnjMGP_FVBNJ_P006779877.291870.143

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_FVBNJ_G0028631mus_musculus_fvbnjMGP_FVBNJ_P006779899.915999.6636mus_caroliMGP_CAROLIEiJ_P006475199.915999.6636
MGP_FVBNJ_G0028631mus_musculus_fvbnjMGP_FVBNJ_P006779899.915999.9159mus_musculus_129s1svimjMGP_129S1SvImJ_P006816099.915999.9159
MGP_FVBNJ_G0028631mus_musculus_fvbnjMGP_FVBNJ_P006779899.915999.9159mus_musculus_ajMGP_AJ_P006821799.915999.9159
MGP_FVBNJ_G0028631mus_musculus_fvbnjMGP_FVBNJ_P006779899.915999.9159mus_musculus_balbcjMGP_BALBcJ_P006813999.915999.9159
MGP_FVBNJ_G0028631mus_musculus_fvbnjMGP_FVBNJ_P006779899.915999.9159mus_musculus_c57bl6njMGP_C57BL6NJ_P006862999.915999.9159
MGP_FVBNJ_G0028631mus_musculus_fvbnjMGP_FVBNJ_P006779899.915999.9159mus_musculus_dba2jMGP_DBA2J_P006788799.915999.9159
MGP_FVBNJ_G0028631mus_musculus_fvbnjMGP_FVBNJ_P006779899.915999.9159mus_musculus_cbajMGP_CBAJ_P006775499.915999.9159
MGP_FVBNJ_G0028631mus_musculus_fvbnjMGP_FVBNJ_P006779899.915999.9159mus_musculus_c3hhejMGP_C3HHeJ_P006780899.915999.9159
MGP_FVBNJ_G0028631mus_musculus_fvbnjMGP_FVBNJ_P006779899.915999.9159mus_musculus_lpjMGP_LPJ_P006798399.915999.9159
MGP_FVBNJ_G0028631mus_musculus_fvbnjMGP_FVBNJ_P006779899.831899.7477mus_spretusMGP_SPRETEiJ_P006726999.831899.7477
MGP_FVBNJ_G0028631mus_musculus_fvbnjMGP_FVBNJ_P006779899.915999.9159mus_musculus_nzohlltjMGP_NZOHlLtJ_P006881199.915999.9159
MGP_FVBNJ_G0028631mus_musculus_fvbnjMGP_FVBNJ_P006779899.915999.9159mus_musculusENSMUSP0000003031599.915999.9159
MGP_FVBNJ_G0028631mus_musculus_fvbnjMGP_FVBNJ_P006779899.915999.9159mus_musculus_pwkphjMGP_PWKPhJ_P006775399.915999.9159
MGP_FVBNJ_G0028631mus_musculus_fvbnjMGP_FVBNJ_P006779899.915999.7477mus_pahariMGP_PahariEiJ_P007983599.915999.7477
MGP_FVBNJ_G0028631mus_musculus_fvbnjMGP_FVBNJ_P006779899.831899.7477mus_spicilegusENSMSIP0000003828699.915899.8316
MGP_FVBNJ_G0028631mus_musculus_fvbnjMGP_FVBNJ_P006779899.915999.9159mus_musculus_casteijMGP_CASTEiJ_P006824499.915999.9159
MGP_FVBNJ_G0028631mus_musculus_fvbnjMGP_FVBNJ_P006779899.579599.5795mus_musculus_nodshiltjMGP_NODShiLtJ_P006780399.579599.5795
MGP_FVBNJ_G0028631mus_musculus_fvbnjMGP_FVBNJ_P006779899.915999.9159mus_musculus_wsbeijMGP_WSBEiJ_P006699399.915999.9159
MGP_FVBNJ_G0028631mus_musculus_fvbnjMGP_FVBNJ_P006779899.915999.9159mus_musculus_akrjMGP_AKRJ_P006812899.915999.9159
MGP_FVBNJ_G0028631mus_musculus_fvbnjMGP_FVBNJ_P006779899.579599.3272rattus_norvegicusENSRNOP0000001583199.412399.1604

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression